Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  195  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63597081--63597151
8
8.6
8
79
11
56
30
0
1
67
0.99
63598252--63598351
40
2.5
41
86
4
150
23
27
19
31
1.98
63599182--63599260
38
2.0
40
92
4
135
44
17
8
29
1.79
63605738--63605768
9
3.4
9
95
0
53
25
6
0
67
1.14
63606240--63606282
22
2.0
22
86
9
61
74
2
13
9
1.16
63607066--63607122
6
9.5
6
79
7
53
49
0
17
33
1.47
63607066--63607122
17
3.2
18
75
7
62
49
0
17
33
1.47
63607228--63607292
21
3.2
20
82
6
85
18
23
24
33
1.96
63610424--63610676
89
2.9
88
77
10
257
33
8
18
39
1.81
63611700--63611728
14
2.1
14
93
6
51
68
0
3
27
1.05
63616807--63616842
18
2.1
17
89
5
54
22
5
5
66
1.34
63624178--63624208
6
5.2
6
96
0
53
32
3
64
0
1.09
63624954--63624978
13
1.9
13
100
0
50
32
12
0
56
1.36
63627899--63627950
27
1.9
27
92
0
86
21
30
36
11
1.89
63628076--63628117
3
14.7
3
82
9
52
66
0
30
2
1.04
63628150--63628180
6
5.2
6
92
0
53
80
0
19
0
0.71
63628152--63628198
18
2.7
18
83
3
60
72
0
27
0
0.85
63628150--63628183
12
2.8
12
95
0
59
79
0
20
0
0.73
63628232--63628287
27
2.1
27
83
12
71
42
0
8
48
1.34
63628617--63628648
13
2.5
13
94
0
55
46
0
6
46
1.27
63628832--63629528
150
4.8
148
89
5
1014
59
6
6
27
1.47
63641423--63641480
25
2.3
25
87
0
80
29
13
24
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63641607--63641679
27
2.7
28
72
6
78
39
0
17
42
1.50
63641607--63641674
14
5.0
13
77
10
57
39
0
17
42
1.50
63642732--63642774
21
2.0
21
86
4
59
20
6
4
67
1.33
63654728--63654777
15
3.4
14
76
17
57
36
22
16
26
1.94
63654715--63654800
29
3.0
29
85
0
118
33
22
17
26
1.96
63656756--63656803
25
1.9
25
83
8
62
33
2
16
47
1.58
63657556--63657596
16
2.6
16
88
3
57
34
26
14
24
1.94
63669230--63669447
47
4.7
45
78
12
210
29
19
27
24
1.98
63669228--63669529
47
6.4
45
73
15
177
30
18
27
23
1.98
63669226--63669447
95
2.4
94
82
7
267
28
18
27
24
1.98
63676443--63676759
47
6.7
47
73
13
235
27
20
29
22
1.98
63677531--63677645
55
2.1
54
82
6
133
19
16
33
30
1.94
63683506--63683647
38
3.7
38
84
2
178
35
33
19
11
1.88
63683628--63683708
41
2.0
41
90
0
126
37
33
14
14
1.88
63691849--63691945
42
2.3
42
89
3
151
23
15
24
36
1.94
63704088--63704139
12
4.2
12
76
13
61
50
3
0
46
1.20
63704094--63704144
25
2.1
24
88
3
75
49
3
0
47
1.20
63704697--63704726
15
2.0
15
93
0
51
30
3
6
60
1.39
63707063--63707098
3
11.3
3
88
11
54
66
0
0
33
0.92
63707656--63707685
6
5.0
6
91
0
51
33
16
20
30
1.94
63707656--63707698
12
3.6
12
81
9
52
32
20
20
25
1.97
63707650--63707698
18
2.7
18
80
0
53
32
24
18
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63714841--63714867
3
9.0
3
100
0
54
66
0
0
33
0.92
63718381--63718441
28
2.1
30
84
6
81
26
8
9
55
1.60
63725981--63726056
37
2.1
37
100
0
152
34
18
15
31
1.92
63728495--63728591
45
2.2
44
83
7
115
29
23
17
28
1.97
63728271--63729151
177
5.0
176
82
3
984
29
22
18
28
1.98
63728269--63729151
354
2.5
353
85
2
1130
29
22
18
28
1.98
63730370--63730394
6
4.2
6
100
0
50
0
32
0
68
0.90
63730898--63730922
6
4.2
6
100
0
50
0
0
16
84
0.63
63732671--63732695
5
5.0
5
100
0
50
60
40
0
0
0.97
63736383--63736431
24
2.1
24
84
3
64
20
2
48
28
1.60
63741136--63741169
17
2.0
17
94
0
59
11
44
5
38
1.65
63743754--63743782
14
2.1
14
100
0
58
41
0
6
51
1.28
63744900--63744936
18
2.1
18
89
0
56
29
0
10
59
1.31
63745177--63745343
43
3.7
43
76
14
174
23
17
29
28
1.97
63745213--63745391
51
3.7
50
77
13
203
24
18
28
27
1.98
63745165--63745387
94
2.4
94
89
0
347
24
20
27
27
1.99
63750298--63750374
27
3.0
26
77
7
77
25
25
24
23
2.00
63757633--63757703
26
2.7
25
79
12
72
26
1
8
63
1.31
63761700--63761780
41
2.0
42
85
7
112
40
3
3
51
1.37
63762613--63762677
33
2.0
33
96
3
123
44
12
9
33
1.74
63762666--63762768
48
2.1
48
89
0
152
33
10
16
39
1.83
63763673--63763711
16
2.5
15
83
4
51
2
7
7
82
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63763674--63763738
27
2.5
26
78
12
62
6
6
9
78
1.09
63763686--63763735
24
2.1
23
82
10
57
8
6
8
78
1.11
63770877--63770951
26
3.0
24
75
21
73
8
9
5
77
1.12
63770877--63770951
23
3.0
23
76
17
69
8
9
5
77
1.12
63772963--63773201
49
4.8
49
86
2
298
25
17
27
28
1.98
63785208--63785292
43
2.0
43
90
0
134
52
5
4
36
1.46
63787152--63787214
30
2.1
30
93
0
108
55
14
3
26
1.54
63788360--63788433
23
3.2
22
74
9
67
18
14
10
55
1.68
63792001--63792048
18
2.7
18
93
0
78
33
12
14
39
1.84
63794873--63795270
49
8.3
49
95
2
668
33
8
28
29
1.86
63795389--63795467
37
2.1
37
81
4
97
25
17
29
27
1.98
63798594--63798654
13
4.7
13
85
0
86
37
29
8
24
1.84
63799337--63799377
21
2.0
21
85
0
55
51
29
4
14
1.63
63800554--63800620
14
4.7
14
85
3
62
40
7
14
37
1.75
63800568--63800614
15
3.2
15
87
3
60
46
6
12
34
1.67
63807478--63807508
13
2.4
13
94
0
53
9
32
6
51
1.60
63809609--63809647
20
2.0
20
85
10
53
58
2
0
38
1.12
63811133--63811180
20
2.4
20
82
0
69
33
31
18
16
1.94
63814546--63814620
22
3.3
22
71
14
62
48
0
1
50
1.09
63815971--63816027
26
2.2
26
84
6
80
22
1
0
75
0.90
63815970--63816026
10
6.3
9
78
15
57
21
1
0
77
0.86
63821604--63821851
130
1.9
127
86
4
356
37
18
16
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63821614--63821888
130
2.1
129
82
4
333
37
18
15
28
1.91
63822935--63823028
3
31.3
3
71
12
68
60
2
6
30
1.33
63822935--63823028
23
3.9
25
78
9
90
60
2
6
30
1.33
63822968--63823025
20
2.9
20
82
7
73
58
3
5
32
1.37
63823097--63823130
14
2.3
15
90
5
52
61
5
11
20
1.50
63823103--63823149
15
3.1
15
81
6
51
63
4
10
21
1.43
63823123--63823164
12
3.5
12
81
12
50
59
0
9
30
1.29
63823144--63823182
15
2.6
15
84
8
53
58
2
7
30
1.39
63825389--63825512
40
3.1
40
81
9
137
35
21
17
25
1.95
63825574--63825669
40
2.4
40
85
3
131
32
19
19
28
1.97
63825565--63825698
40
3.3
40
81
4
128
30
18
20
30
1.96
63825389--63825888
196
2.6
185
81
9
537
31
20
19
28
1.97
63825769--63825888
40
3.0
41
80
7
156
27
20
23
29
1.98
63825770--63825891
41
3.0
40
80
8
158
29
19
22
28
1.98
63826299--63826333
14
2.5
14
90
0
61
22
5
48
22
1.72
63826354--63826387
13
2.6
13
90
0
50
23
2
26
47
1.66
63826382--63826424
18
2.4
18
84
7
52
25
2
30
41
1.68
63826413--63826460
7
6.7
7
80
4
60
20
0
35
43
1.52
63827276--63827458
84
2.2
84
83
5
219
34
12
20
32
1.90
63827389--63827528
71
2.0
72
87
4
203
37
10
21
30
1.86
63829796--63829855
27
2.2
27
79
5
68
36
5
5
53
1.45
63830451--63830481
14
2.3
14
94
5
55
29
0
6
64
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63830576--63830792
9
24.8
9
69
16
93
47
14
1
36
1.56
63830584--63830825
16
15.0
16
68
13
88
47
14
1
35
1.55
63830576--63830798
64
3.5
64
90
0
356
47
14
1
35
1.55
63830668--63830777
30
3.5
30
72
18
107
49
13
1
35
1.53
63839385--63839826
218
2.0
218
98
0
857
33
12
19
34
1.90
63840773--63840801
14
2.1
14
93
6
51
34
0
10
55
1.34
63841214--63841265
21
2.5
21
90
0
77
25
21
50
3
1.65
63841653--63841762
43
2.5
43
88
1
148
25
28
19
27
1.98
63845720--63845771
20
2.7
20
75
21
56
30
21
17
30
1.96
63846876--63846953
39
2.0
39
89
0
120
23
15
33
28
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356