genome.fa.s11.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  115  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36582587--36582766	49	3.7	50	80	6	181	29	20	28	22	1.98
36582587--36582762	96	1.8	96	85	6	246	28	19	28	22	1.98
36582451--36582765	47	6.7	46	71	14	189	29	18	28	24	1.98
36584687--36584828	40	3.6	40	84	2	171	26	23	27	23	2.00
36589261--36589618	47	7.6	47	94	1	590	29	30	7	32	1.85
36589311--36589389	25	3.3	25	66	16	76	31	29	5	34	1.79
36589261--36589618	190	1.9	188	94	1	635	29	30	7	32	1.85
36594974--36595006	17	2.1	16	88	11	50	30	0	0	69	0.88
36595053--36595111	21	2.8	22	85	7	70	25	0	5	69	1.09
36595082--36595141	26	2.4	24	86	8	84	30	0	1	68	0.99
36599773--36599814	21	2.0	21	95	0	75	54	21	0	23	1.44
36610176--36610225	24	2.1	25	85	7	68	52	0	26	22	1.48
36610323--36610480	43	3.4	43	68	16	136	29	17	18	34	1.94
36610315--36610513	96	2.1	96	100	0	398	28	20	17	34	1.95
36622151--36622214	31	2.1	31	90	0	101	34	15	28	21	1.94
36624854--36624892	4	9.8	4	88	0	60	48	20	5	25	1.70
36629684--36629718	18	1.9	18	100	0	70	45	25	11	17	1.81
36631884--36631971	23	3.8	23	82	5	106	12	5	36	45	1.66
36632782--36632822	7	5.7	7	94	5	73	82	0	0	17	0.66
36632783--36632828	20	2.2	22	85	11	62	84	0	0	15	0.62
36641762--36641840	29	2.7	29	94	0	140	50	0	18	30	1.47
36642844--36643008	42	4.0	42	91	1	260	30	26	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36642844--36643007	83	2.0	83	91	0	265	30	26	15	27	1.96
36652744--36652919	46	3.8	46	76	12	189	19	21	28	30	1.98
36652741--36652912	93	1.8	93	92	0	290	20	21	29	29	1.98
36658224--36658266	16	2.8	15	80	13	52	16	13	6	62	1.51
36659789--36659834	6	7.7	6	95	0	83	30	2	0	67	1.03
36659796--36659841	6	7.4	7	95	4	50	30	0	0	69	0.89
36659796--36659872	18	4.2	19	82	9	79	23	2	2	71	1.11
36659789--36659859	12	5.8	12	83	6	70	25	2	1	70	1.09
36660169--36660230	30	2.1	30	93	0	106	11	33	38	16	1.84
36666730--36666809	33	2.4	33	83	8	108	30	23	11	35	1.90
36669712--36669973	39	6.7	40	86	7	319	26	22	27	24	2.00
36679146--36679376	40	5.8	40	88	2	243	27	26	20	25	1.99
36679126--36679376	79	3.2	79	82	3	299	28	26	20	24	1.99
36682574--36682686	33	3.5	33	74	10	90	32	23	10	33	1.89
36683861--36683886	13	2.0	13	100	0	52	46	7	7	38	1.61
36687868--36687984	51	2.3	51	98	0	225	29	23	13	33	1.93
36687960--36687998	7	5.6	7	93	0	60	20	30	7	41	1.80
36687960--36687998	14	2.8	14	92	0	69	20	30	7	41	1.80
36687909--36688047	65	2.1	65	89	0	215	27	24	14	33	1.94
36692206--36692250	21	2.1	22	83	4	56	60	2	13	24	1.45
36695096--36695154	31	1.9	31	96	0	109	27	18	27	27	1.98
36696271--36696328	30	1.9	30	86	6	82	20	39	27	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36698917--36699047	47	2.8	48	83	1	165	32	28	16	22	1.96
36699975--36700115	27	5.2	27	84	11	191	35	24	24	16	1.95
36699975--36700115	54	2.6	54	93	2	239	35	24	24	16	1.95
36700221--36700294	28	2.8	26	85	4	85	31	9	22	36	1.86
36701783--36701960	27	6.6	27	83	3	178	29	28	15	26	1.96
36701809--36701959	82	1.9	81	88	4	232	28	27	16	27	1.97
36716661--36716815	48	3.2	48	75	9	156	27	24	18	29	1.98
36720218--36720253	16	2.2	16	90	0	54	50	13	22	13	1.77
36720203--36720253	24	2.1	24	85	0	66	50	13	19	15	1.77
36720464--36720545	28	2.9	28	77	13	87	26	13	29	30	1.94
36727361--36727456	28	3.4	28	77	16	108	29	32	14	23	1.94
36727361--36727482	56	2.2	56	86	5	167	28	29	13	27	1.95
36727383--36727482	28	3.6	27	72	10	85	28	28	14	30	1.95
36738613--36738786	46	3.8	45	74	15	158	31	28	19	20	1.97
36738622--36738790	93	1.8	93	88	0	257	30	29	19	20	1.97
36741181--36741215	17	2.1	17	100	0	70	28	40	25	5	1.78
36756596--36756912	40	7.9	40	93	0	535	26	20	28	23	1.99
36764880--36765194	40	7.9	40	92	1	517	26	20	28	24	1.99
36764880--36765194	79	4.0	80	93	1	517	26	20	28	24	1.99
36764880--36765194	119	2.6	119	92	0	522	26	20	28	24	1.99
36767243--36767417	70	2.5	69	85	2	217	28	14	22	33	1.94
36767435--36767775	77	4.5	75	85	5	429	32	15	19	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36767421--36767770	72	4.7	72	82	9	371	32	14	19	33	1.92
36767848--36767952	54	1.9	54	84	3	140	27	14	17	40	1.88
36779787--36779829	10	4.1	10	80	11	50	53	27	2	16	1.55
36781454--36781564	40	2.8	40	83	1	98	25	28	23	22	1.99
36781477--36781620	40	3.6	40	86	3	184	23	26	24	25	2.00
36789470--36789637	40	4.2	40	81	4	97	25	27	23	24	2.00
36789493--36789637	40	3.6	40	84	4	184	23	26	24	26	2.00
36793546--36793581	16	2.1	18	90	10	58	75	0	13	11	1.06
36795279--36795535	40	6.4	40	82	4	315	22	21	27	27	1.99
36795279--36795535	80	3.2	80	91	2	394	22	21	27	27	1.99
36798210--36798245	16	2.2	16	100	0	72	44	5	5	44	1.50
36800091--36800142	27	1.9	27	88	0	77	36	36	7	19	1.80
36801036--36801071	17	2.1	17	90	10	56	0	16	8	75	1.04
36802912--36802941	15	1.9	16	93	6	53	50	20	6	23	1.71
36806584--36806806	40	5.6	39	80	8	200	26	21	26	25	1.99
36809704--36809919	47	4.6	44	76	12	166	26	18	30	23	1.98
36812263--36812293	16	1.9	16	93	0	53	35	22	0	41	1.54
36812260--36812299	20	2.0	20	85	0	53	37	22	0	40	1.54
36816013--36816070	29	2.0	30	82	3	73	29	13	10	46	1.77
36839783--36839856	29	2.6	29	86	4	96	25	31	16	27	1.96
36851888--36851931	22	2.0	22	100	0	88	27	9	31	31	1.88
36870973--36871157	79	2.3	81	80	8	209	25	28	22	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36870954--36871157	40	5.1	40	80	8	220	25	27	22	24	2.00
36879179--36879280	39	2.6	39	90	4	154	24	29	20	25	1.99
36891108--36891363	40	6.4	40	82	5	324	23	21	28	27	1.99
36891108--36891363	80	3.2	80	92	3	403	23	21	28	27	1.99
36903682--36903741	25	2.4	25	78	13	68	23	23	11	41	1.87
36903915--36903966	26	2.0	26	85	7	70	40	5	17	36	1.73
36905892--36906059	40	4.2	40	81	3	187	23	21	27	27	1.99
36905892--36906059	80	2.1	80	85	3	223	23	21	27	27	1.99
36906296--36906337	22	1.9	22	85	9	59	33	9	14	42	1.78
36908545--36908722	27	6.6	27	82	6	180	29	27	15	27	1.96
36908566--36908720	82	1.9	81	88	4	231	29	27	15	27	1.96
36909209--36909242	2	17.0	2	87	0	50	47	2	2	47	1.32
36916568--36916743	27	6.5	27	83	5	167	30	27	15	26	1.96
36916568--36916744	55	3.3	53	80	7	187	29	27	15	27	1.96
36924073--36924128	25	2.2	25	96	0	103	21	3	28	46	1.68
36929728--36930029	27	11.2	27	86	3	340	36	18	19	25	1.94
36929730--36930025	54	5.5	54	86	0	387	35	18	19	25	1.95
36929753--36930025	81	3.4	81	90	0	393	35	19	20	24	1.95
36930311--36930361	21	2.4	21	86	0	66	35	11	21	31	1.90
36930311--36930375	11	6.1	11	71	5	53	35	13	18	32	1.90
36930407--36930476	25	2.8	25	95	0	122	25	25	22	25	2.00
36930406--36930489	25	3.4	24	85	8	107	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36930407--36930501	50	1.9	50	82	8	122	28	24	22	25	1.99
36930743--36930829	6	14.3	6	74	11	79	19	17	12	50	1.77
36936396--36936482	34	2.6	34	85	3	104	25	22	25	26	2.00
36944226--36944292	34	2.0	34	91	5	109	26	23	22	26	2.00
36948556--36948815	40	6.6	40	86	7	313	25	27	21	26	1.99
36948556--36948815	118	2.2	119	86	9	363	25	27	21	26	1.99
36955843--36956104	40	6.6	40	81	10	258	25	27	21	25	1.99
36955843--36956105	39	6.7	40	86	7	310	25	27	21	25	1.99
36955843--36956105	79	3.3	80	82	9	319	25	27	21	25	1.99
36958913--36958945	16	2.1	16	94	0	57	60	6	9	24	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356