genome.fa.s11.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  196  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63853760--63853821	27	2.3	27	88	0	88	16	8	37	38	1.78
63857416--63857623	47	4.5	46	75	10	176	24	29	19	26	1.98
63864229--63864383	55	2.8	54	77	7	152	33	16	26	23	1.95
63867012--63867105	27	3.5	27	79	2	109	24	17	15	42	1.88
63867014--63867130	27	4.3	27	79	4	78	23	14	17	44	1.86
63867125--63867210	26	3.2	27	85	11	106	37	15	13	33	1.87
63877251--63877294	19	2.4	18	85	7	54	40	9	0	50	1.34
63888783--63888975	60	3.2	59	78	6	192	26	17	12	43	1.85
63889400--63889468	31	2.2	32	86	2	95	43	8	18	28	1.80
63892991--63893094	42	2.5	42	93	3	174	17	31	28	22	1.96
63894042--63894138	41	2.4	41	92	0	167	30	27	17	23	1.97
63906372--63906405	16	2.2	16	89	5	52	61	2	0	35	1.11
63906745--63906783	19	2.0	20	85	5	53	43	20	2	33	1.65
63907589--63907795	53	3.8	53	78	1	162	20	25	16	38	1.93
63907601--63907795	55	3.6	53	78	2	165	19	25	17	37	1.93
63909530--63909601	35	2.1	35	94	0	126	11	13	30	44	1.79
63914962--63915041	27	3.0	27	88	0	115	23	18	18	38	1.93
63915035--63915367	27	12.5	26	78	8	244	32	11	18	37	1.87
63915035--63915367	54	6.2	53	78	9	313	32	11	18	37	1.87
63915070--63915367	53	5.6	54	82	4	327	33	11	18	36	1.87
63915035--63915360	80	4.1	79	83	6	381	32	11	18	37	1.86
63916967--63917189	39	5.7	40	84	8	257	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63916967--63917189	79	2.8	81	83	9	273	26	22	26	24	2.00
63916967--63917222	79	3.3	79	81	10	208	26	21	26	24	1.99
63924873--63925095	39	5.7	40	85	8	266	25	22	27	24	2.00
63924873--63925095	79	2.8	81	84	9	282	25	22	27	24	2.00
63924873--63925128	79	3.3	79	81	10	217	26	21	27	24	1.99
63926439--63926590	27	5.6	27	80	2	162	29	8	22	39	1.84
63926438--63926591	80	1.9	82	86	2	222	29	9	22	38	1.85
63926910--63926998	28	3.2	28	80	6	99	28	37	11	23	1.89
63928741--63928806	20	3.7	19	66	27	54	27	12	16	43	1.83
63928742--63928807	33	2.0	33	100	0	132	27	12	18	42	1.85
63929724--63929798	27	2.8	27	83	0	87	29	14	18	37	1.91
63929772--63930256	54	9.0	55	78	7	267	31	9	18	39	1.84
63929834--63930269	27	16.3	27	81	4	470	31	10	18	39	1.84
63929817--63930269	80	5.6	80	81	3	466	31	10	19	39	1.85
63930568--63930677	28	3.9	28	80	4	123	25	33	13	27	1.93
63930568--63930677	56	1.9	57	83	1	141	25	33	13	27	1.93
63934046--63934201	47	3.3	47	80	4	174	33	8	29	27	1.87
63934272--63934356	40	2.2	40	84	2	109	17	22	31	28	1.97
63936858--63937213	40	8.9	40	92	0	577	21	20	30	27	1.98
63937377--63937427	25	2.0	25	81	7	59	33	13	31	21	1.92
63941032--63941187	47	3.3	47	80	4	174	33	8	29	27	1.87
63948087--63948357	46	5.8	49	76	8	212	23	30	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63950818--63951246	47	9.1	47	93	1	696	32	9	29	28	1.88
63951365--63951443	37	2.1	37	86	4	106	25	18	29	26	1.98
63956144--63956190	22	2.1	22	92	0	76	25	25	17	31	1.97
63958101--63958232	24	5.4	24	75	8	97	37	16	19	25	1.93
63964083--63964172	27	3.3	27	87	0	90	25	23	10	41	1.85
63964228--63964331	27	3.8	28	75	13	99	45	17	7	29	1.76
63964376--63964449	27	2.7	27	76	12	71	37	20	20	21	1.94
63964389--63964453	27	2.4	27	82	5	78	35	18	24	21	1.96
63965247--63965316	25	2.8	24	91	4	104	24	27	24	24	2.00
63965246--63965329	25	3.4	24	83	8	98	27	23	23	25	2.00
63965464--63965597	42	3.2	42	98	0	259	31	14	20	33	1.93
63965621--63965704	31	2.7	31	88	1	134	27	15	27	29	1.96
63970454--63970531	37	2.1	37	87	0	111	26	32	16	24	1.96
63970650--63970970	47	6.7	47	96	2	554	29	28	8	33	1.86
63973149--63973327	85	2.1	86	97	2	344	26	27	8	37	1.85
63976030--63976214	40	4.6	39	80	9	187	25	28	21	24	1.99
63976032--63976214	79	2.3	80	82	9	205	25	27	21	24	1.99
63979221--63979323	47	2.2	47	100	0	206	32	7	29	31	1.85
63979252--63979393	70	2.0	70	98	0	275	33	6	28	31	1.82
63979299--63979346	23	2.1	23	100	0	96	35	0	29	35	1.58
63979322--63979873	47	11.7	47	95	0	906	31	9	29	29	1.88
63979221--63979440	117	1.9	117	98	0	422	31	8	29	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63979992--63980070	37	2.1	37	83	4	97	26	17	29	26	1.98
63997889--63997954	18	3.7	18	95	0	114	33	13	13	39	1.84
63998378--63998549	72	2.4	71	82	4	229	25	7	13	54	1.65
64000567--64000601	13	2.7	13	86	0	52	42	22	8	25	1.82
64003811--64003913	46	2.2	48	85	3	138	35	14	23	26	1.93
64005198--64005259	30	2.1	30	96	0	115	25	16	29	29	1.96
64012592--64012645	27	2.0	27	96	0	99	50	3	27	18	1.64
64018576--64018651	19	3.5	23	77	15	72	27	0	17	55	1.42
64018632--64018670	18	2.1	19	86	13	55	20	0	10	69	1.17
64022620--64022661	22	1.9	22	95	0	75	50	23	0	26	1.50
64031917--64031994	29	2.7	28	84	11	104	25	15	30	28	1.96
64031947--64032274	174	1.9	174	96	0	611	29	14	25	30	1.95
64034867--64034893	13	2.1	13	100	0	54	14	33	37	14	1.88
64036022--64036085	14	4.5	15	71	9	53	17	0	37	45	1.48
64036287--64036479	84	2.3	83	81	6	228	35	11	24	28	1.91
64036334--64036542	84	2.5	84	80	3	197	33	11	23	30	1.91
64039102--64039207	50	2.2	49	81	6	117	38	10	7	43	1.67
64040068--64040097	13	2.3	13	100	0	60	53	10	0	36	1.35
64045195--64045223	14	2.1	14	93	6	51	34	0	10	55	1.34
64045627--64045670	15	2.9	15	89	3	70	34	15	50	0	1.45
64046040--64046171	43	3.1	43	77	0	111	32	21	21	25	1.98
64046059--64046185	43	3.0	43	77	2	130	30	23	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64048524--64048579	15	3.7	15	83	9	78	32	0	16	51	1.44
64049341--64049393	17	3.2	17	70	24	58	18	1	13	66	1.34
64052294--64052343	18	2.7	18	79	17	57	12	18	0	70	1.17
64052276--64052364	41	2.2	39	83	15	103	10	19	0	70	1.14
64056266--64056391	47	2.7	47	79	13	143	24	27	18	29	1.98
64060355--64060469	39	3.0	39	90	1	178	30	20	26	23	1.98
64065514--64065641	39	3.3	39	84	2	159	34	21	22	21	1.97
64070114--64070160	8	5.6	8	82	7	58	74	2	2	21	1.03
64070113--64070161	9	5.7	9	80	4	57	75	2	2	20	1.00
64070114--64070163	17	3.0	16	82	8	64	74	2	2	22	1.03
64070181--64070240	20	3.0	20	71	11	61	58	5	8	28	1.48
64070478--64070529	20	2.6	20	72	6	52	40	0	1	57	1.10
64070578--64070738	86	1.9	86	88	2	243	34	7	18	39	1.79
64074608--64074824	46	4.7	45	78	14	185	26	19	30	23	1.98
64081630--64081752	28	4.4	28	90	2	176	33	28	12	26	1.92
64085456--64085626	46	3.7	46	78	6	175	26	19	30	22	1.98
64090040--64090164	39	3.2	39	90	0	196	25	22	28	24	2.00
64091751--64092444	47	14.6	47	93	1	1118	29	29	8	32	1.86
64091751--64092444	239	2.9	239	94	1	1189	29	29	8	32	1.86
64091751--64092444	288	2.4	288	95	0	1234	29	29	8	32	1.86
64101065--64101239	44	3.9	45	76	3	149	41	12	22	24	1.87
64104519--64104571	27	2.0	27	88	0	79	16	11	32	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64128288--64128462	44	3.9	45	76	3	149	41	12	22	24	1.87
64131734--64131789	27	2.1	27	80	6	62	16	8	37	37	1.80
64131743--64131808	27	2.4	28	80	7	82	13	12	36	37	1.82
64152368--64152399	12	2.7	12	95	0	55	18	6	0	75	1.01
64156123--64156279	42	3.7	42	87	3	217	31	24	14	29	1.94
64156125--64156279	85	1.8	84	86	4	222	30	24	14	30	1.94
64163239--64163289	25	2.0	25	92	0	84	37	1	25	35	1.67
64174503--64174554	23	2.3	22	81	18	63	80	3	3	11	0.97
64174500--64174556	6	9.8	6	81	9	57	80	3	3	12	0.96
64184838--64185169	49	6.7	49	83	6	416	29	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356