genome.fa.s11.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  139  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44699664--44699748	31	2.8	31	87	1	136	22	25	20	31	1.98
44699966--44700037	26	2.8	26	87	2	101	27	22	23	26	1.99
44700170--44700217	25	1.9	25	86	0	69	31	14	20	33	1.93
44707745--44707821	28	2.8	28	86	7	113	35	20	22	22	1.96
44707731--44707819	28	3.3	27	81	7	99	38	20	20	21	1.94
44715608--44715719	27	4.2	26	87	7	143	37	19	23	19	1.94
44715631--44715720	28	3.3	28	89	4	139	37	22	22	17	1.94
44721977--44722014	14	2.7	14	88	8	51	21	0	21	57	1.40
44724054--44724275	39	5.6	40	84	7	242	25	21	27	25	1.99
44724054--44724275	79	2.8	80	81	9	249	25	21	27	25	1.99
44724054--44724275	40	5.6	40	85	5	256	25	21	27	25	1.99
44724105--44724308	79	2.6	79	82	5	209	25	20	27	25	1.99
44734602--44734715	28	4.2	27	78	5	113	34	20	25	20	1.96
44736837--44736995	43	3.7	44	76	14	152	25	16	25	32	1.96
44738511--44738553	16	2.7	16	85	0	59	53	20	18	6	1.67
44738660--44738696	19	2.0	18	94	5	65	32	21	32	13	1.92
44738804--44738916	29	3.9	29	75	7	106	27	13	32	26	1.93
44746581--44746724	29	5.1	27	77	8	87	27	13	30	28	1.94
44746600--44746724	29	4.4	29	80	5	123	28	14	31	26	1.95
44750050--44750168	29	4.2	29	85	2	161	30	27	13	28	1.94
44753256--44753288	17	1.9	17	100	0	66	57	12	12	18	1.64
44755249--44755302	27	2.0	27	96	0	99	50	18	7	24	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44758304--44758529	40	5.7	40	90	4	314	26	26	21	24	1.99
44766507--44766698	40	4.8	40	90	1	190	27	27	20	23	1.99
44766487--44766697	80	2.7	80	80	6	241	29	27	20	23	1.99
44771561--44771697	50	2.7	49	86	8	179	30	27	16	24	1.97
44771616--44771696	25	3.2	26	64	13	69	30	28	14	25	1.95
44774276--44774336	30	2.0	30	84	6	79	29	24	4	40	1.76
44777612--44777797	40	4.6	41	86	6	240	24	21	27	26	1.99
44785663--44785886	40	5.7	40	87	5	287	24	20	27	27	1.99
44785663--44785886	79	2.8	79	85	4	292	24	20	27	27	1.99
44791657--44791836	28	6.5	28	94	2	294	26	13	28	31	1.94
44791657--44791836	55	3.3	55	94	1	299	26	13	28	31	1.94
44791657--44791836	83	2.2	82	93	1	306	26	13	28	31	1.94
44813419--44813535	39	3.1	39	91	3	193	28	23	21	27	1.99
44815683--44815713	16	1.9	16	93	0	53	70	9	9	9	1.33
44824107--44824308	89	2.3	89	93	0	350	31	19	23	25	1.98
44824107--44824357	89	2.8	89	87	2	337	29	18	23	28	1.98
44824505--44824753	44	5.7	43	87	4	338	30	14	28	26	1.95
44824022--44824738	309	2.3	305	80	8	720	31	16	24	27	1.97
44824505--44824786	88	3.2	88	83	9	337	30	14	29	26	1.95
44824505--44824746	132	1.8	132	90	1	387	31	14	28	26	1.94
44827159--44827321	37	4.3	38	84	10	187	26	20	27	25	1.99
44843689--44843911	79	2.8	78	82	9	265	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44843689--44843911	39	5.7	40	86	8	266	24	27	22	25	2.00
44851831--44852053	79	2.8	78	82	9	265	24	27	22	25	2.00
44851831--44852053	39	5.7	40	86	8	266	24	27	22	25	2.00
44854403--44854650	44	5.7	43	88	3	329	26	28	14	30	1.95
44854403--44854650	88	2.8	88	88	1	365	26	28	14	30	1.95
44854410--44854650	132	1.8	131	89	2	376	26	28	14	31	1.95
44854849--44855047	89	2.2	89	94	0	346	25	24	19	31	1.98
44863401--44863431	16	1.9	16	93	0	53	9	9	9	70	1.33
44865572--44865690	39	3.1	39	95	0	211	26	21	23	27	1.99
44873675--44873793	39	3.1	39	91	0	193	25	21	24	29	1.99
44877980--44878161	40	4.6	40	77	10	185	25	28	20	24	1.99
44878008--44878160	79	1.9	80	84	6	204	25	28	20	25	1.99
44884127--44884156	13	2.3	13	94	0	51	6	33	0	60	1.23
44893060--44893111	26	2.0	27	92	3	88	38	15	13	32	1.86
44897075--44897132	26	2.1	26	81	9	62	32	8	17	41	1.80
44898852--44898920	26	2.7	26	79	0	75	24	23	27	24	2.00
44899685--44899709	13	1.9	13	100	0	50	28	24	24	24	2.00
44899698--44899768	30	2.4	30	92	0	115	22	30	28	18	1.97
44903849--44903924	37	2.1	36	83	11	93	39	5	2	52	1.38
44908708--44908819	56	2.0	56	100	0	224	46	26	3	23	1.68
44910485--44910557	4	18.2	4	97	0	137	23	0	26	50	1.49
44912560--44912597	18	2.1	18	85	9	51	50	5	5	39	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44913536--44913605	28	2.8	24	76	18	70	54	1	1	42	1.18
44913550--44913608	28	2.1	29	93	3	102	52	0	0	47	1.00
44919506--44920410	140	6.9	126	76	10	544	27	19	22	31	1.98
44919618--44920422	140	6.0	138	79	8	804	26	19	22	31	1.98
44919920--44920424	126	3.9	126	78	9	498	26	20	21	31	1.98
44920046--44920318	139	2.0	139	87	2	395	25	21	21	30	1.98
44920187--44920435	125	2.0	125	84	3	331	28	20	20	30	1.98
44921234--44921878	129	5.0	129	90	3	996	27	6	17	48	1.72
44926232--44926376	40	3.6	40	85	4	193	25	24	26	23	2.00
44933835--44933931	39	2.5	38	86	5	124	36	41	11	11	1.77
44934287--44934361	17	4.1	18	68	17	55	17	40	28	14	1.89
44938016--44938111	40	2.4	40	86	8	133	27	16	28	28	1.97
44940960--44941006	23	2.0	23	95	0	85	42	12	2	42	1.55
44944007--44944089	41	2.0	41	95	0	148	27	26	19	26	1.99
44956332--44956390	13	4.5	13	81	8	66	28	20	42	8	1.81
44966255--44966292	15	2.5	15	95	0	67	47	0	7	44	1.32
44970920--44971143	48	4.7	48	82	1	279	26	19	28	26	1.99
44970920--44971142	96	2.3	96	90	1	358	26	18	28	26	1.98
44979735--44979776	20	2.2	18	87	8	57	35	0	2	61	1.09
44979925--44979984	30	2.0	30	93	0	102	25	18	13	43	1.86
44981707--44981878	79	2.2	79	84	3	220	25	21	27	25	1.99
44981654--44981876	40	5.6	39	81	8	209	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44984998--44985072	25	3.0	25	88	0	114	28	22	18	30	1.97
44984978--44985072	50	1.9	50	86	0	136	28	22	18	30	1.97
44985566--44985637	23	3.1	23	70	4	56	18	16	22	43	1.88
44985566--44985662	46	2.1	46	82	3	115	16	16	23	43	1.87
44987906--44987953	25	1.9	25	83	8	62	52	2	6	39	1.39
45000605--45000646	14	3.1	13	86	10	57	26	2	0	71	0.98
45000606--45000652	24	2.0	24	83	8	60	25	2	0	72	0.96
45002492--45002677	80	2.3	80	83	11	222	28	27	20	23	1.99
45002494--45002677	40	4.6	40	82	8	198	28	27	20	23	1.99
45010401--45010568	40	4.2	40	82	8	148	27	27	20	24	1.99
45010436--45010621	80	2.3	80	83	9	229	27	27	20	23	1.99
45010438--45010621	40	4.6	40	83	7	205	27	27	21	23	1.99
45017026--45017427	47	8.5	47	90	2	597	33	8	29	28	1.87
45017026--45017427	96	4.2	94	88	2	588	33	8	29	28	1.87
45017026--45017412	143	2.7	143	92	0	630	32	8	29	28	1.87
45017546--45017624	37	2.1	37	86	4	106	25	18	29	26	1.98
45018927--45019000	29	2.6	29	89	4	105	25	16	32	25	1.96
45019355--45019659	40	7.6	40	92	1	459	25	20	26	27	1.99
45019317--45019659	120	2.9	120	87	2	467	25	20	26	27	1.99
45023195--45023596	47	8.5	47	91	2	615	32	8	29	29	1.87
45023195--45023596	96	4.2	94	89	2	615	32	8	29	29	1.87
45023195--45023577	143	2.7	143	92	0	649	32	8	29	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45023715--45023793	37	2.1	37	86	4	106	26	18	30	24	1.98
45025650--45025801	27	5.6	27	92	3	232	30	28	13	27	1.94
45025650--45025826	55	3.2	55	89	0	246	31	29	12	26	1.93
45033644--45033795	27	5.6	27	92	3	232	30	28	13	27	1.94
45033644--45033820	55	3.2	55	89	0	246	31	29	12	26	1.93
45057007--45057547	47	11.5	47	94	0	875	32	8	29	28	1.87
45057666--45057744	37	2.1	37	83	4	106	25	17	31	25	1.97
45061092--45061271	68	2.8	63	78	10	166	25	29	15	30	1.95
45061943--45062003	30	2.0	30	83	0	77	31	22	8	37	1.84
45067994--45068071	31	2.5	31	89	2	113	20	26	21	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356