genome.fa.s11.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  124  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39449284--39449472	101	1.9	101	95	0	342	34	7	12	46	1.69
39453576--39453633	30	2.0	30	86	3	82	44	10	10	34	1.73
39469859--39470084	40	5.6	40	89	2	301	24	23	26	24	2.00
39479296--39479470	47	3.8	46	75	13	171	24	28	17	29	1.97
39479349--39479511	47	3.6	45	75	17	133	24	28	18	28	1.98
39480704--39480741	15	2.5	15	100	0	76	55	7	18	18	1.66
39482958--39482982	12	2.1	12	100	0	50	8	8	32	52	1.60
39491584--39491712	27	4.8	27	84	3	136	41	21	10	27	1.85
39491640--39491995	27	13.3	27	86	1	441	36	19	18	25	1.94
39491674--39491994	54	6.0	53	92	2	518	36	19	20	24	1.95
39491673--39491995	133	2.4	134	85	3	373	36	19	20	24	1.95
39492602--39492653	27	2.0	26	84	3	68	17	26	21	34	1.95
39492694--39492751	27	2.2	27	84	3	73	20	24	20	34	1.97
39494847--39495043	27	7.3	27	77	6	159	40	20	7	31	1.81
39494847--39495041	80	2.4	80	79	4	214	40	20	7	31	1.81
39495020--39495132	27	4.2	27	83	0	145	31	23	5	38	1.77
39494993--39495132	54	2.6	54	77	0	154	32	24	5	37	1.79
39495458--39495517	27	2.3	26	82	2	66	23	21	20	35	1.96
39497223--39497412	40	4.8	40	92	1	274	24	23	29	22	1.99
39505317--39505506	40	4.8	40	92	1	274	24	24	28	22	1.99
39506916--39507096	6	29.3	6	71	17	122	18	18	14	48	1.81
39506919--39506983	25	2.6	25	90	0	94	15	20	16	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39506944--39507069	19	6.4	19	72	20	107	17	20	14	47	1.82
39506938--39507020	37	2.2	37	89	0	130	16	20	16	45	1.85
39506981--39507045	25	2.6	25	92	0	103	20	20	13	46	1.84
39506916--39507082	62	2.7	62	90	0	262	18	18	14	48	1.81
39507000--39507087	37	2.4	37	88	0	131	20	18	12	48	1.80
39509056--39509232	27	6.6	27	82	2	160	38	22	9	28	1.86
39509232--39509336	27	3.9	27	86	2	113	32	20	7	39	1.81
39509225--39509339	54	2.1	54	79	10	128	30	24	6	38	1.82
39509249--39509337	27	3.3	27	90	0	133	31	24	5	38	1.79
39509573--39509624	27	2.0	26	84	3	68	17	26	21	34	1.95
39509554--39509693	69	2.1	68	84	2	183	19	27	22	30	1.98
39509838--39509993	6	25.3	6	71	19	99	20	17	12	49	1.79
39509866--39509936	19	3.8	19	80	10	92	19	21	11	47	1.80
39509838--39509979	25	5.7	25	76	12	107	20	17	12	49	1.79
39509860--39509984	37	3.4	37	85	4	162	20	19	12	48	1.79
39514793--39514841	21	2.3	21	100	0	98	22	30	26	20	1.98
39514793--39514850	21	2.8	21	92	5	82	20	29	27	22	1.99
39520922--39520955	13	2.5	14	90	4	52	11	55	20	11	1.67
39522876--39522998	48	2.6	48	82	2	140	27	13	26	31	1.94
39522960--39523083	42	3.0	42	85	0	158	28	16	25	29	1.96
39526627--39526776	41	3.7	41	83	1	203	28	28	22	20	1.99
39534736--39534840	40	2.6	40	73	1	111	29	27	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39537068--39537575	89	5.7	89	76	4	402	32	16	19	31	1.94
39537072--39537480	133	3.1	133	86	3	538	32	16	19	31	1.94
39537068--39537538	44	10.6	44	73	7	333	32	16	19	31	1.94
39537586--39537757	52	3.3	52	91	0	290	34	18	20	25	1.96
39537550--39537753	104	2.0	104	90	1	320	35	18	19	26	1.95
39537715--39537807	44	2.1	45	87	2	134	34	19	17	29	1.94
39541857--39541911	22	2.6	21	76	21	60	20	5	1	72	1.13
39541867--39541912	22	2.0	23	87	8	67	21	6	2	69	1.22
39542103--39542131	13	2.3	13	94	5	51	17	6	3	72	1.21
39547458--39547509	24	2.2	24	89	0	77	55	9	1	32	1.43
39549427--39549478	24	2.2	24	89	0	77	55	9	1	32	1.43
39558320--39558362	15	2.8	15	82	13	52	32	4	2	60	1.30
39558328--39558369	20	2.2	19	83	12	50	30	7	0	61	1.22
39558489--39558556	13	4.7	15	74	20	65	33	2	0	63	1.10
39558647--39558683	14	2.4	16	86	8	51	29	5	0	64	1.15
39559054--39559100	24	2.0	24	87	8	69	34	4	2	59	1.29
39562897--39563291	47	8.4	47	94	0	646	32	8	29	28	1.87
39563416--39563489	37	2.0	37	86	5	105	22	16	31	29	1.96
39566898--39567289	44	8.8	44	73	10	244	31	15	21	31	1.94
39566898--39567289	133	2.9	132	84	3	520	31	15	21	31	1.94
39566894--39567316	89	4.8	88	74	8	322	31	15	21	31	1.94
39567287--39567412	52	2.4	52	89	0	180	34	19	19	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39567836--39567874	18	2.2	18	90	9	62	84	10	2	2	0.81
39569009--39569068	10	5.6	10	75	14	57	18	8	1	71	1.19
39569018--39569083	34	1.9	34	81	6	80	24	7	3	65	1.33
39571217--39571380	46	3.5	46	70	14	147	23	19	27	29	1.98
39572083--39572129	23	2.0	23	83	4	58	53	0	17	29	1.44
39582958--39583125	48	3.6	46	80	6	194	28	20	27	23	1.99
39592908--39593235	48	6.9	48	95	0	586	35	7	27	30	1.83
39593376--39593478	37	2.8	37	93	0	170	25	18	31	25	1.98
39596112--39596270	42	3.8	42	81	3	178	30	13	25	31	1.93
39599804--39599864	30	2.0	30	90	0	95	39	6	24	29	1.80
39603815--39603867	23	2.3	23	90	0	79	75	0	11	13	1.05
39603797--39603853	23	2.7	20	79	15	60	70	0	19	10	1.16
39603818--39603875	23	2.6	23	86	2	73	74	0	13	12	1.08
39611544--39611597	27	2.0	26	89	3	81	38	14	9	37	1.79
39611596--39611770	27	6.5	27	82	3	122	41	23	8	27	1.82
39611612--39611765	54	2.8	53	82	11	179	41	22	8	27	1.82
39611612--39611765	81	1.9	81	81	5	186	41	22	8	27	1.82
39611803--39611918	27	4.3	27	86	0	133	38	18	18	25	1.92
39611811--39611913	54	1.9	53	88	2	152	37	17	20	24	1.93
39612579--39612677	27	3.7	26	82	6	90	23	23	15	38	1.92
39612797--39612921	6	20.3	6	70	22	82	18	18	15	48	1.82
39612797--39612900	31	3.4	31	71	24	101	18	19	15	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39612827--39612895	19	3.7	18	77	12	77	17	18	17	46	1.85
39612797--39612861	25	2.6	25	82	4	78	20	16	15	47	1.82
39615620--39615749	47	2.8	46	84	2	152	26	16	25	32	1.96
39619831--39619911	40	2.0	40	95	0	144	32	8	23	35	1.85
39622490--39622540	7	7.3	7	100	0	102	27	0	27	45	1.54
39624628--39624676	18	2.8	17	81	9	62	38	0	0	61	0.96
39624722--39624770	21	2.7	18	80	20	57	46	0	2	51	1.12
39625308--39625354	14	3.4	14	76	5	60	34	12	4	48	1.61
39625303--39625344	14	3.1	14	72	6	50	45	9	2	42	1.49
39625303--39625356	27	2.0	27	100	0	108	40	11	3	44	1.58
39636493--39636518	13	2.0	13	100	0	52	61	30	0	7	1.24
39643719--39643744	13	2.0	13	100	0	52	61	30	0	7	1.24
39657510--39657680	93	1.8	93	94	2	308	29	30	19	19	1.97
39657503--39657676	46	3.7	47	79	15	218	30	29	20	20	1.97
39659919--39659978	13	4.2	14	74	15	52	61	0	0	38	0.96
39659956--39659981	13	2.0	13	100	0	52	53	0	0	46	1.00
39660049--39660133	22	3.9	22	76	14	86	57	1	0	41	1.06
39660058--39660131	21	3.4	21	84	15	96	58	0	0	41	0.98
39660191--39660240	21	2.5	20	93	6	84	78	4	4	14	1.05
39666002--39666174	46	3.7	46	77	13	201	21	21	27	29	1.99
39665999--39666169	93	1.8	93	94	0	306	21	21	28	28	1.99
39676023--39676072	22	2.3	22	96	0	91	32	22	22	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39701873--39701951	38	2.1	38	97	0	149	17	8	16	56	1.64
39702352--39702401	24	2.1	24	85	7	66	14	20	18	48	1.82
39716049--39716916	432	2.0	432	99	0	1700	37	15	23	23	1.93
39717600--39718154	205	2.7	205	87	2	781	31	18	21	28	1.97
39719809--39719935	26	4.4	30	73	24	91	32	3	3	60	1.31
39726633--39726713	28	2.9	28	79	3	81	45	6	20	27	1.75
39726669--39726749	29	2.8	30	85	7	96	44	9	20	24	1.82
39726520--39726982	233	2.0	229	94	1	800	39	11	19	29	1.87
39726920--39726983	29	2.2	30	86	10	89	43	12	21	21	1.86
39730624--39730704	40	2.0	40	100	0	162	40	4	17	37	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356