Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  170  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55124484--55124591
53
2.0
53
100
0
216
37
11
16
35
1.84
55127469--55127500
5
6.4
5
100
0
64
78
0
0
21
0.76
55127736--55127789
28
1.9
28
100
0
108
40
18
7
33
1.78
55131399--55131433
15
2.3
15
90
0
52
28
14
17
40
1.88
55137803--55138190
130
3.0
130
85
2
494
31
17
14
36
1.90
55138292--55138624
130
2.6
130
84
2
402
33
17
13
36
1.89
55142728--55142757
6
5.0
6
100
0
60
16
16
0
66
1.25
55145412--55145481
25
2.8
25
84
0
95
25
24
22
27
2.00
55145527--55145596
21
3.3
21
91
0
113
37
17
8
37
1.80
55145527--55145603
5
14.8
5
71
12
57
36
16
9
37
1.81
55145524--55145585
31
2.0
31
84
6
81
40
16
6
37
1.74
55154099--55154586
27
18.1
27
84
0
575
40
7
21
30
1.81
55154099--55154613
81
6.4
81
86
0
656
40
7
21
30
1.81
55154582--55154705
27
4.6
27
78
8
112
29
9
21
39
1.85
55158156--55158234
39
2.0
39
97
0
149
31
12
16
39
1.86
55174701--55174757
26
2.2
25
81
9
62
19
24
19
36
1.94
55174834--55174920
24
3.6
24
77
10
79
17
26
21
34
1.95
55174721--55174916
73
2.7
73
74
10
166
19
25
22
32
1.97
55174835--55174938
48
2.1
49
81
10
115
19
25
21
33
1.97
55174908--55174972
25
2.6
25
80
4
69
26
21
15
36
1.93
55180174--55180198
10
2.5
10
100
0
50
8
0
0
92
0.40
55192373--55192636
40
6.7
40
87
6
310
25
22
26
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55200400--55200624
40
5.7
40
87
5
296
24
22
27
25
2.00
55200400--55200657
119
2.2
119
81
8
285
25
21
27
25
2.00
55214834--55215015
28
6.5
28
94
0
312
33
26
11
28
1.91
55220302--55220440
37
3.8
37
89
0
206
26
30
17
25
1.98
55220302--55220440
74
1.9
74
92
0
233
26
30
17
25
1.98
55220559--55221062
47
10.6
47
92
3
814
29
30
8
32
1.86
55220559--55221056
190
2.6
188
93
2
820
29
30
8
32
1.86
55220559--55221062
237
2.1
237
94
0
884
29
30
8
32
1.86
55223254--55223430
84
2.1
84
95
2
320
26
27
8
37
1.85
55229252--55229424
46
3.7
46
74
13
165
21
19
28
30
1.98
55229246--55229417
93
1.8
93
89
0
272
21
20
27
29
1.98
55237015--55237158
40
3.6
40
84
7
177
25
27
22
24
2.00
55241714--55241806
43
2.2
44
92
3
154
51
13
6
27
1.66
55241829--55241868
19
2.2
18
90
4
62
42
17
2
37
1.63
55243629--55243657
8
3.6
8
100
0
58
24
0
0
75
0.80
55243630--55243667
16
2.4
16
86
8
51
26
0
0
73
0.83
55247421--55247657
40
5.9
40
91
0
384
26
20
28
24
1.99
55259995--55260161
46
3.6
46
72
10
160
20
19
29
30
1.97
55268962--55269123
43
3.8
42
76
6
148
28
16
24
30
1.96
55274968--55275038
33
2.2
33
82
10
83
52
1
1
45
1.18
55275127--55275154
4
7.0
4
100
0
56
75
0
0
25
0.81
55275153--55275184
5
6.4
5
100
0
64
40
0
0
59
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55275269--55275305
16
2.3
17
81
13
51
70
0
27
2
1.01
55276855--55276883
15
1.9
15
100
0
58
34
20
13
31
1.92
55277654--55277734
40
2.0
40
100
0
162
34
7
28
29
1.84
55292878--55293111
27
8.7
27
75
5
141
40
19
7
32
1.79
55292960--55293220
27
9.6
27
75
7
179
42
18
8
31
1.80
55293214--55293291
27
2.9
26
75
11
77
38
20
19
21
1.94
55294098--55294167
25
2.8
25
86
0
95
27
24
21
27
1.99
55294382--55294464
31
2.7
31
92
3
143
30
16
25
27
1.97
55301068--55301226
43
3.7
43
82
12
193
30
25
20
23
1.98
55322112--55322209
28
3.5
28
95
1
171
32
28
12
26
1.92
55330109--55330231
28
4.4
28
90
2
176
33
28
12
26
1.92
55338024--55338181
29
5.4
29
82
6
178
42
12
24
20
1.87
55337996--55338205
87
2.4
87
84
3
289
40
12
23
22
1.88
55342782--55343300
27
19.3
27
87
2
659
36
19
19
25
1.95
55343713--55343806
6
15.3
6
72
16
77
20
15
14
48
1.80
55343723--55343780
19
3.4
19
65
30
58
18
17
17
46
1.84
55343713--55343792
31
2.6
31
95
0
142
20
16
15
48
1.81
55347565--55347676
27
4.1
27
83
7
129
15
25
23
36
1.93
55347565--55347676
54
2.1
54
86
3
154
15
25
23
36
1.93
55348672--55348769
27
3.7
26
77
10
99
39
25
8
26
1.83
55348753--55349190
27
16.3
27
85
4
528
36
20
18
24
1.95
55349435--55349486
27
2.0
26
84
3
68
17
26
21
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55349605--55349706
31
3.3
31
91
0
150
19
17
14
48
1.82
55349608--55349680
25
3.0
24
82
8
76
19
15
16
49
1.80
55349605--55349684
6
13.0
6
75
15
65
18
15
16
50
1.79
55353124--55353226
53
1.9
53
96
0
188
32
22
13
32
1.93
55356446--55356491
23
2.0
23
87
8
67
36
2
19
41
1.64
55370350--55370516
46
3.6
44
73
15
131
25
28
17
29
1.97
55372968--55373000
17
1.9
17
100
0
66
27
6
18
48
1.71
55373936--55373974
19
2.1
19
85
0
51
71
7
5
15
1.26
55374415--55374519
56
1.9
56
82
5
133
35
20
23
20
1.96
55374440--55374519
27
2.9
27
86
5
106
32
21
23
22
1.98
55374635--55374697
28
2.2
29
88
5
92
30
9
26
33
1.88
55377526--55377746
40
5.6
40
82
2
232
24
26
23
25
2.00
55380450--55380488
19
2.1
19
90
0
60
38
25
10
25
1.87
55380950--55381189
118
2.0
118
95
0
435
28
24
22
25
1.99
55382446--55382546
41
2.5
41
85
1
132
35
24
17
21
1.95
55385395--55385655
27
9.7
27
72
13
83
36
22
8
32
1.84
55385515--55385642
54
2.4
53
76
8
125
40
21
9
28
1.84
55385551--55385693
54
2.6
54
82
2
153
39
20
8
31
1.83
55386571--55386640
25
2.8
25
88
0
104
27
24
22
25
2.00
55386570--55386653
25
3.4
24
80
8
89
29
21
22
26
1.99
55386859--55386941
31
2.7
30
83
7
114
32
14
25
27
1.95
55392626--55392689
28
2.3
28
76
10
67
26
34
20
18
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55415675--55415752
6
12.8
6
70
17
54
20
17
14
47
1.82
55429292--55429514
40
5.6
40
85
3
236
26
27
21
24
1.99
55429446--55429523
40
1.9
41
82
10
97
26
28
21
23
1.99
55436567--55436789
40
5.6
40
85
3
236
26
27
21
24
1.99
55436721--55436798
40
1.9
41
82
10
97
26
28
21
23
1.99
55438618--55438677
23
2.6
23
86
0
84
13
31
30
25
1.93
55441241--55441317
13
5.9
13
84
0
91
29
9
27
33
1.88
55441241--55441317
39
2.0
39
86
0
109
29
9
27
33
1.88
55442397--55442458
30
2.1
30
90
6
99
25
3
12
58
1.50
55443582--55443636
19
2.8
20
75
10
51
70
5
12
10
1.31
55444542--55444589
15
3.1
15
81
6
51
29
0
4
66
1.10
55446579--55446680
50
2.0
51
94
1
179
45
25
11
17
1.83
55449391--55449448
30
1.9
30
96
0
107
17
22
37
22
1.93
55463503--55463578
40
1.9
40
83
5
100
30
13
27
28
1.94
55475311--55475383
14
5.1
14
69
18
60
17
13
19
49
1.80
55475310--55475397
44
2.0
44
100
0
176
18
18
18
45
1.86
55478422--55478450
13
2.2
13
100
0
58
31
0
13
55
1.39
55483879--55483918
6
6.7
6
100
0
80
15
0
0
85
0.61
55486296--55486432
60
2.3
60
85
8
172
25
25
20
28
1.99
55486295--55486396
28
3.5
27
71
19
80
24
28
20
26
1.99
55488734--55488762
15
1.9
15
100
0
58
58
0
0
41
0.98
55488738--55488771
15
2.3
15
89
0
50
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55488857--55488900
19
2.4
18
85
7
54
40
9
0
50
1.34
55490321--55490349
13
2.2
13
100
0
58
31
0
13
55
1.39
55491003--55491123
47
2.6
45
77
16
122
22
29
18
29
1.97
55490909--55491123
94
2.3
94
81
9
235
23
27
19
28
1.98
55493644--55494048
47
8.6
47
95
1
684
28
30
8
32
1.87
55499917--55499971
27
2.0
27
89
6
85
21
30
23
23
1.99
55502114--55502157
22
2.0
23
86
4
63
34
9
2
54
1.44
55502114--55502157
23
2.0
22
86
13
63
34
9
2
54
1.44
55508836--55508995
27
5.9
27
79
12
159
35
21
24
18
1.95
55508854--55508995
54
2.6
54
91
3
214
35
22
23
17
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356