Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  338  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108254351--108254407
16
3.6
15
83
9
69
61
5
3
29
1.35
108254365--108254420
17
3.4
17
82
2
60
58
3
3
33
1.32
108254417--108254484
18
3.5
20
67
32
58
52
1
11
33
1.47
108254411--108254487
36
2.1
36
97
0
145
54
1
10
33
1.43
108254351--108254463
3
37.0
3
69
16
63
56
3
7
32
1.43
108257830--108257869
15
2.5
16
88
8
55
72
0
7
20
1.08
108257830--108257870
16
2.5
17
80
11
50
73
0
7
19
1.07
108258292--108258365
20
3.5
19
76
20
76
37
1
2
58
1.21
108258293--108258373
44
1.9
39
88
11
117
34
1
3
60
1.22
108258306--108258373
19
3.3
19
76
19
66
32
0
4
63
1.14
108258321--108258380
20
3.0
20
80
0
66
28
0
6
65
1.18
108258768--108258830
28
2.2
28
91
0
99
31
6
30
31
1.83
108260332--108260387
27
2.1
27
93
0
94
28
46
3
21
1.68
108260337--108260403
27
2.5
27
85
4
82
35
41
4
17
1.70
108261735--108261799
27
2.4
27
89
5
96
41
1
1
55
1.18
108274322--108274480
44
3.7
43
73
13
139
38
21
23
16
1.92
108274318--108274617
85
3.5
86
73
5
239
37
21
22
19
1.95
108274499--108274700
43
4.6
43
74
4
163
35
21
21
21
1.96
108274801--108274972
45
3.8
45
91
0
263
32
18
21
27
1.97
108275225--108275277
27
2.0
27
96
0
97
22
16
3
56
1.56
108280129--108280191
28
2.2
28
91
0
99
33
7
28
30
1.86
108280875--108280899
7
3.6
7
100
0
50
72
0
0
28
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108283431--108283474
16
2.9
15
82
3
52
70
0
9
20
1.14
108283431--108283469
16
2.5
16
87
4
53
71
0
10
17
1.12
108290636--108290722
21
4.0
20
68
24
52
71
5
0
22
1.07
108304809--108304844
16
2.2
16
90
0
54
38
27
2
30
1.71
108304866--108304939
32
2.3
32
81
11
89
39
20
12
28
1.88
108305900--108305944
22
2.0
22
91
0
72
35
11
11
42
1.76
108308720--108308873
51
3.0
51
87
0
227
33
22
10
33
1.88
108310112--108310145
16
2.1
16
88
0
50
32
2
29
35
1.73
108310716--108310767
15
3.7
13
79
18
59
78
0
5
15
0.92
108315877--108315942
18
3.3
18
66
22
51
30
3
3
63
1.24
108315857--108315940
42
2.0
42
100
0
168
30
2
2
64
1.19
108316849--108316917
36
1.9
36
96
0
129
34
4
8
52
1.52
108317619--108317683
30
2.2
31
83
5
80
40
0
9
50
1.34
108317616--108317684
29
2.3
30
76
11
70
40
0
8
50
1.33
108319634--108319852
119
1.8
119
83
2
287
33
11
17
36
1.87
108320898--108320975
20
3.9
19
73
20
70
8
16
1
73
1.15
108323059--108323210
78
1.9
78
91
0
250
31
21
13
32
1.93
108323175--108323263
40
2.2
40
82
7
110
38
21
10
30
1.86
108323190--108323311
40
3.0
41
78
4
113
36
18
13
31
1.89
108324970--108324996
10
2.7
10
100
0
54
70
0
0
29
0.88
108327723--108327961
72
3.3
72
89
0
379
37
19
12
30
1.89
108330140--108330165
8
3.2
8
100
0
52
23
11
0
65
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108330235--108330276
22
1.9
22
85
0
57
30
9
7
52
1.61
108330899--108330932
16
2.1
16
89
10
52
38
0
0
61
0.96
108332792--108332835
23
2.0
22
86
4
61
79
2
2
15
0.93
108333732--108333769
14
2.7
14
84
8
51
84
0
7
7
0.79
108339003--108339084
12
7.7
10
75
16
67
67
2
4
25
1.23
108339034--108339068
3
11.7
3
93
0
61
65
0
2
31
1.07
108340472--108340846
43
8.8
42
74
10
273
26
22
21
29
1.99
108340447--108340630
87
2.1
87
97
0
350
26
20
21
32
1.98
108359537--108359578
22
1.9
22
85
9
59
66
2
4
26
1.23
108363115--108363149
3
11.7
3
93
0
61
65
0
2
31
1.07
108364992--108365194
72
2.8
72
82
4
257
38
16
14
30
1.89
108372516--108372547
16
2.0
16
93
0
55
81
9
0
9
0.88
108375473--108375576
26
4.0
26
96
1
192
36
25
6
30
1.82
108384074--108384128
29
1.9
28
85
3
74
34
1
5
58
1.32
108384460--108384518
21
2.7
23
77
17
63
32
1
8
57
1.39
108384460--108384524
23
2.7
25
75
20
84
33
1
9
55
1.41
108384527--108384566
19
2.2
19
86
4
55
27
2
0
70
1.01
108384540--108384590
21
2.4
22
83
3
68
23
1
1
72
1.05
108385737--108385779
18
2.3
19
88
11
63
62
0
9
27
1.25
108385751--108385791
15
2.6
17
82
17
54
65
0
4
29
1.13
108385904--108385968
26
2.5
26
76
14
71
60
1
0
38
1.07
108386508--108386553
20
2.4
19
81
3
56
39
2
58
0
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108387096--108387153
22
2.6
22
94
0
98
12
3
55
29
1.53
108387413--108387444
16
2.0
16
93
0
55
37
0
9
53
1.34
108387787--108387836
24
2.1
24
85
3
66
32
14
4
50
1.61
108391945--108392063
3
39.0
3
69
15
66
33
4
4
57
1.37
108392085--108392133
23
2.1
22
82
10
62
32
0
10
57
1.32
108392145--108392209
22
3.0
21
77
20
62
36
3
4
55
1.36
108392382--108392492
25
4.5
24
75
13
91
32
9
4
54
1.52
108392653--108392723
23
3.1
23
75
15
67
33
1
4
60
1.25
108392876--108392935
28
2.1
28
85
11
79
30
6
3
60
1.39
108396701--108396750
21
2.3
22
86
13
68
6
16
0
78
0.95
108400670--108400878
72
2.9
72
90
1
312
37
18
14
28
1.91
108402244--108402386
72
2.0
72
88
0
214
37
18
27
17
1.93
108403804--108403859
25
2.2
26
87
3
78
64
3
26
5
1.32
108405913--108405945
3
11.0
3
100
0
66
66
0
0
33
0.92
108408596--108408808
26
8.2
26
90
0
345
35
23
7
33
1.83
108408596--108408808
52
4.1
52
96
0
390
35
23
7
33
1.83
108410456--108410494
19
2.1
19
85
9
53
41
33
5
20
1.74
108415801--108415908
26
4.2
26
93
0
189
37
25
5
30
1.79
108417180--108417302
43
2.8
43
74
3
104
30
8
4
55
1.52
108417279--108417357
18
4.2
18
73
20
81
30
1
2
65
1.13
108417305--108417355
17
3.2
16
76
17
54
31
1
0
66
1.03
108417310--108417378
30
2.2
30
85
10
86
31
4
0
63
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108417308--108417373
13
4.4
16
69
23
54
30
3
0
66
1.06
108417474--108417513
3
13.3
3
89
0
62
32
5
0
62
1.17
108417464--108417513
12
4.2
12
87
2
57
30
6
0
64
1.18
108417663--108417724
29
2.1
31
79
11
76
30
12
0
56
1.37
108418076--108418101
12
2.2
12
100
0
52
42
0
7
50
1.31
108419635--108419685
14
3.6
14
76
5
50
39
5
1
52
1.37
108423573--108423637
32
2.0
32
100
0
130
30
6
24
38
1.80
108425118--108425170
26
2.0
26
85
7
72
37
22
15
24
1.92
108426425--108426466
21
2.0
22
85
4
59
45
4
14
35
1.66
108426875--108426968
39
2.4
39
92
3
154
13
24
22
39
1.90
108430752--108430790
17
2.3
17
86
0
51
33
2
5
58
1.33
108430891--108430947
27
2.1
28
77
9
64
38
3
0
57
1.16
108430901--108430956
27
2.1
27
86
3
78
39
1
0
58
1.08
108430964--108431057
26
3.6
26
79
2
89
28
5
7
58
1.47
108432672--108432909
122
1.9
122
87
2
343
32
12
17
37
1.87
108436722--108436793
35
2.1
35
97
0
135
34
2
25
37
1.70
108446484--108446512
15
2.0
15
93
6
51
17
34
0
48
1.47
108451899--108452260
188
1.9
188
95
0
652
28
18
10
42
1.84
108454584--108454792
72
2.9
72
90
1
312
37
19
14
28
1.91
108469415--108469443
15
1.9
15
100
0
58
31
27
20
20
1.98
108469673--108469719
24
2.0
24
100
0
94
29
34
10
25
1.90
108469785--108469815
16
1.9
16
93
0
53
16
35
0
48
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108470345--108470399
6
9.2
6
95
0
101
32
14
0
52
1.42
108471241--108471282
20
2.1
20
100
0
84
28
14
30
26
1.95
108472398--108472487
34
2.6
34
94
0
162
52
14
10
23
1.71
108473385--108473429
23
2.0
22
86
4
63
55
11
2
31
1.47
108474750--108474815
25
3.0
21
77
18
71
63
3
1
31
1.19
108479925--108480072
3
49.0
3
70
6
66
57
1
10
30
1.41
108480020--108480097
27
2.7
29
86
5
97
61
0
11
26
1.30
108480243--108480301
9
6.4
9
77
11
57
59
1
8
30
1.37
108480255--108480305
18
2.8
18
85
5
68
58
0
7
33
1.27
108480368--108480407
16
2.5
16
83
0
53
62
0
7
30
1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356