Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  328  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105717004--105717050
21
2.2
22
92
3
78
21
38
19
21
1.94
105723341--105723386
18
2.6
17
86
6
56
39
0
2
58
1.10
105724082--105724168
41
2.1
41
84
2
111
41
5
10
42
1.63
105726161--105726195
18
1.9
18
88
11
54
62
0
0
37
0.95
105726152--105726205
24
2.3
24
87
3
74
61
0
0
38
0.96
105728577--105728625
25
1.9
26
87
4
73
51
30
2
16
1.56
105730948--105730996
22
2.2
22
82
7
55
18
2
4
75
1.06
105732570--105732619
3
16.7
3
100
0
100
34
0
0
66
0.92
105736512--105736564
21
2.5
22
75
22
60
71
3
9
15
1.26
105741141--105741196
29
1.9
29
96
0
103
46
12
7
33
1.69
105742838--105742873
18
1.9
19
88
5
56
75
13
11
0
1.06
105744802--105745214
203
2.0
203
97
0
772
19
26
15
38
1.92
105745470--105745715
129
1.9
129
84
1
332
22
27
16
33
1.96
105747198--105747379
49
3.7
49
88
2
274
29
26
18
25
1.98
105747182--105747377
100
2.0
99
94
1
347
29
24
18
27
1.98
105749958--105749999
18
2.3
18
91
0
66
64
0
2
33
1.07
105750931--105751098
84
2.0
84
95
2
302
25
14
20
39
1.90
105755261--105755311
25
2.0
25
92
0
84
37
17
5
39
1.74
105759934--105759984
25
2.0
25
92
0
84
37
17
5
39
1.74
105762693--105762740
12
3.8
12
79
15
60
62
14
0
22
1.32
105762688--105762744
27
2.1
27
100
0
114
57
14
0
28
1.37
105783942--105783970
12
2.4
12
100
0
58
51
6
0
41
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105785857--105785914
29
2.0
30
90
9
95
18
18
3
58
1.53
105797481--105798018
213
2.5
213
89
1
803
31
15
21
32
1.94
105799847--105799904
16
3.4
16
83
11
62
13
6
5
74
1.20
105814101--105814169
12
6.3
11
77
12
63
62
4
0
33
1.15
105814097--105814170
22
3.3
22
81
12
80
63
4
0
32
1.13
105821632--105822670
213
4.9
210
83
4
1170
30
15
19
34
1.93
105821632--105822670
426
2.5
423
84
4
1323
30
15
19
34
1.93
105824349--105824383
17
2.0
18
88
5
54
34
0
2
62
1.10
105824558--105824591
18
1.9
17
88
5
50
52
0
2
44
1.16
105825523--105825548
6
4.3
6
100
0
52
0
61
0
38
0.96
105825645--105825695
25
2.0
25
96
0
93
5
37
3
52
1.44
105831028--105831054
14
1.9
14
100
0
54
40
22
0
37
1.54
105850608--105850717
26
4.2
26
97
0
184
33
5
24
36
1.79
105857894--105857954
13
4.9
13
76
11
65
27
8
24
39
1.84
105858129--105858257
30
4.4
29
66
26
74
48
1
2
47
1.24
105867885--105868136
3
82.0
3
66
24
93
33
3
1
61
1.19
105867885--105868129
17
13.3
19
69
21
82
33
2
1
62
1.18
105867885--105868129
52
4.9
50
70
20
156
33
2
1
62
1.18
105867838--105868088
80
3.1
78
74
14
203
32
2
1
63
1.17
105868413--105868462
26
1.9
26
83
0
64
36
4
0
60
1.16
105872173--105872219
15
3.3
15
80
16
55
23
23
10
42
1.85
105872863--105872985
59
2.1
59
95
0
219
38
19
20
21
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105880477--105880655
44
4.1
44
74
11
161
30
15
25
28
1.96
105880442--105880691
132
1.9
132
88
4
380
30
16
25
27
1.96
105880503--105880699
88
2.2
88
75
14
192
30
16
25
27
1.96
105880635--105880718
44
1.9
44
92
0
141
27
16
28
27
1.97
105880714--105881140
206
2.1
207
92
1
705
32
19
21
26
1.97
105882839--105882886
16
3.1
15
85
8
69
33
4
2
60
1.27
105883009--105883057
15
3.2
14
81
16
53
30
2
4
63
1.24
105897895--105898517
210
3.0
209
88
1
899
33
14
20
31
1.92
105900898--105900930
6
5.8
6
86
13
52
30
0
0
69
0.88
105901498--105901781
146
1.9
146
79
6
317
36
20
11
31
1.89
105903124--105903169
19
2.4
19
85
7
58
47
13
19
19
1.81
105905453--105905579
3
43.3
3
79
7
118
58
0
7
33
1.33
105905661--105905710
7
7.1
7
82
11
50
66
2
2
30
1.14
105905660--105905710
11
4.5
11
79
11
50
64
1
1
31
1.15
105905659--105905710
17
3.0
17
83
11
70
65
1
1
30
1.14
105906105--105906156
12
4.4
11
83
13
59
67
1
3
26
1.18
105906089--105906147
15
4.1
15
74
12
61
66
3
5
25
1.28
105908421--105908447
12
2.2
12
100
0
54
7
14
29
48
1.71
105908493--105908738
41
6.1
40
92
1
393
34
21
23
20
1.96
105908499--105908738
81
3.0
81
92
1
401
34
21
23
20
1.97
105908755--105908886
48
2.8
46
77
11
149
48
30
0
20
1.55
105909010--105909053
15
3.0
15
83
3
54
20
2
29
47
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105909145--105909312
37
4.5
37
92
0
255
11
49
15
23
1.77
105916507--105917059
210
2.6
209
91
0
863
33
14
19
32
1.92
105921722--105921774
24
2.2
24
96
0
97
43
3
3
49
1.38
105922447--105922488
14
2.9
15
78
3
50
45
0
2
52
1.13
105924786--105924831
21
2.2
21
96
0
83
30
23
45
0
1.53
105932217--105932266
10
5.0
10
81
13
59
68
2
8
22
1.26
105935484--105935723
132
1.8
132
87
1
356
25
18
19
36
1.94
105950848--105952405
72
21.6
72
96
1
2842
31
17
18
33
1.94
105950848--105952405
217
7.2
216
97
1
2842
31
17
18
33
1.94
105950848--105952405
145
10.8
144
96
1
2851
31
17
18
33
1.94
105952489--105952521
14
2.4
14
95
5
59
12
9
9
69
1.36
105952320--105952511
86
2.2
87
77
11
214
24
18
16
40
1.91
105952533--105952837
55
5.7
54
92
5
462
30
15
18
35
1.92
105953114--105953230
30
3.9
29
80
7
119
30
21
3
44
1.69
105953475--105953524
10
5.2
10
80
7
59
70
0
30
0
0.88
105953478--105953520
19
2.3
19
88
11
63
69
0
30
0
0.88
105953580--105953625
3
15.0
3
82
13
58
63
0
36
0
0.95
105953583--105953611
10
2.9
10
100
0
58
62
0
37
0
0.96
105953580--105953625
13
3.7
13
81
18
62
63
0
36
0
0.95
105953580--105953638
25
2.3
24
85
8
73
67
0
32
0
0.91
105953745--105953777
17
1.9
17
93
0
57
78
12
6
3
1.04
105953758--105953782
12
2.1
12
100
0
50
84
8
8
0
0.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105953920--105953977
9
6.7
9
82
13
61
81
0
18
0
0.70
105953914--105953977
23
3.0
22
78
17
80
81
0
18
0
0.70
105953931--105953965
7
4.9
7
96
3
61
85
0
14
0
0.59
105954641--105954694
16
3.2
16
75
14
56
35
14
9
40
1.78
105954517--105954950
17
24.5
18
69
15
160
32
11
10
44
1.76
105954691--105954771
19
4.1
20
79
19
98
39
7
8
44
1.63
105954691--105954771
20
4.2
19
80
13
85
39
7
8
44
1.63
105954552--105954960
18
23.4
17
68
18
118
33
11
9
44
1.74
105954691--105954754
21
3.0
22
86
6
78
42
7
7
42
1.63
105954888--105954959
17
4.3
16
76
15
65
34
12
9
43
1.76
105954939--105954981
21
2.0
22
86
13
63
53
9
4
32
1.53
105955614--105955666
22
2.4
22
83
3
61
56
5
0
37
1.23
105955980--105956062
27
3.2
26
75
11
71
65
4
2
27
1.26
105957705--105957744
19
2.0
20
85
14
55
35
47
0
17
1.48
105957806--105957945
27
5.2
28
86
5
157
35
22
23
17
1.95
105959564--105959647
26
3.2
25
89
3
123
35
23
5
34
1.80
105961184--105961211
10
2.8
10
100
0
56
64
0
17
17
1.30
105961163--105961221
31
1.9
30
83
10
75
66
0
13
20
1.25
105961163--105961221
20
2.9
19
78
16
57
66
0
13
20
1.25
105962112--105962214
18
5.4
18
76
13
107
39
26
23
10
1.87
105962132--105962196
21
3.2
21
78
12
82
43
24
23
9
1.83
105962114--105962214
39
2.6
39
96
0
184
40
25
23
9
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105963019--105963065
18
2.8
16
79
20
51
34
0
4
61
1.15
105978394--105978443
25
2.0
25
100
0
100
24
20
16
40
1.91
105980165--105980220
27
2.1
26
87
9
78
39
0
5
55
1.23
105985310--105985342
14
2.3
15
94
5
59
81
0
18
0
0.68
105986863--105987341
73
6.4
72
83
8
532
28
17
22
31
1.97
105986884--105987341
147
3.0
145
84
7
533
28
18
22
30
1.97
105987123--105987289
83
2.0
83
95
0
298
28
18
24
28
1.98
105987588--105987699
54
2.0
56
87
5
165
31
13
16
39
1.87
105987371--105987843
142
3.3
142
89
3
660
31
14
17
35
1.91
105987717--105987746
13
2.3
13
94
0
51
16
10
6
66
1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356