Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  335  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107647210--107647242
17
1.9
17
93
0
57
15
0
3
81
0.80
107647206--107647254
19
2.5
20
83
12
57
14
2
4
79
0.97
107652108--107652139
14
2.1
16
88
11
50
53
6
0
40
1.26
107660059--107660114
15
3.7
15
77
13
51
37
3
0
58
1.15
107662452--107662508
22
2.5
23
75
16
64
49
0
0
50
1.00
107674923--107675012
18
5.0
18
93
0
153
34
16
21
27
1.95
107677659--107677850
94
2.0
94
98
0
375
38
18
16
26
1.92
107679243--107679278
17
2.1
17
100
0
72
27
0
11
61
1.30
107680159--107680256
24
4.0
24
70
7
70
40
6
2
51
1.38
107680153--107680249
51
1.9
51
97
0
185
39
6
4
50
1.47
107680580--107680605
6
4.3
6
100
0
52
80
0
0
19
0.71
107680791--107680842
24
2.2
24
93
6
88
26
26
1
44
1.65
107682884--107682939
21
2.7
19
89
10
76
39
0
3
57
1.16
107708721--107708813
18
5.2
18
85
0
123
31
15
24
29
1.95
107708719--107708813
36
2.6
36
91
3
156
30
15
24
29
1.96
107711938--107711971
14
2.4
14
90
0
50
35
26
8
29
1.87
107717775--107718992
609
2.0
609
99
0
2391
34
19
24
20
1.96
107722570--107722819
131
1.9
133
91
1
414
29
6
26
37
1.82
107723956--107724157
106
1.9
107
95
1
370
30
19
20
29
1.97
107726394--107726450
23
2.5
23
86
8
73
14
7
40
38
1.73
107726940--107728264
88
15.1
88
82
4
1277
30
25
15
28
1.96
107726940--107728264
132
10.0
131
86
4
1326
30
25
15
28
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107726940--107728269
220
6.0
218
88
3
1595
30
25
15
28
1.96
107739444--107739645
106
1.9
107
95
1
370
30
19
20
29
1.97
107741873--107741943
23
3.1
21
80
10
70
16
5
36
40
1.73
107741883--107741939
23
2.5
23
86
8
73
14
7
40
38
1.73
107750369--107750459
37
2.4
39
77
17
93
42
1
4
51
1.29
107754231--107754292
22
2.8
22
80
4
72
14
8
1
75
1.10
107755802--107755885
39
2.2
39
85
12
111
60
3
0
35
1.14
107763881--107763932
8
6.5
8
82
8
61
63
1
1
32
1.16
107763880--107763936
24
2.4
24
82
8
80
63
1
3
31
1.22
107764086--107764150
25
2.8
24
83
6
80
52
6
7
33
1.55
107764139--107764203
33
2.0
33
84
6
87
56
3
4
35
1.35
107764172--107764301
23
5.6
24
74
14
103
57
3
3
35
1.32
107764160--107764236
23
3.3
23
77
10
77
57
2
3
36
1.31
107764100--107764259
80
2.0
80
82
4
196
54
5
5
35
1.46
107764791--107764876
30
2.9
30
87
3
120
20
3
51
24
1.63
107768862--107768886
4
6.2
4
100
0
50
28
0
24
48
1.52
107769660--107769684
2
12.5
2
100
0
50
52
0
0
48
1.00
107771777--107771898
37
3.2
37
86
5
156
31
2
5
60
1.33
107771823--107771883
25
2.5
24
84
12
79
31
1
3
63
1.20
107771776--107771886
13
8.8
12
66
20
57
31
1
5
61
1.29
107771817--107771886
26
2.7
26
82
10
90
31
1
2
64
1.17
107771843--107771925
37
2.2
36
83
6
103
34
3
3
57
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107771945--107771996
26
2.0
25
88
3
77
38
5
1
53
1.36
107771866--107772038
83
2.1
78
78
12
170
33
7
3
55
1.45
107772050--107772097
22
2.2
21
79
13
53
37
6
8
47
1.59
107772113--107772164
21
2.4
21
81
12
61
30
11
1
55
1.46
107772148--107772192
22
2.0
23
83
12
58
33
6
2
57
1.37
107772502--107772549
15
3.1
15
79
11
53
22
0
4
72
1.01
107772502--107772561
29
2.1
29
84
6
77
18
0
5
76
0.96
107774592--107774636
17
2.7
16
86
13
56
66
4
6
22
1.33
107777342--107777399
26
2.2
26
90
0
89
37
22
5
34
1.76
107777911--107777953
15
2.9
15
85
0
50
58
6
6
27
1.50
107777927--107778090
3
55.7
3
74
10
133
62
3
5
29
1.33
107779843--107779902
10
5.8
10
73
19
52
65
0
0
35
0.93
107779848--107779917
31
2.2
32
82
12
90
62
1
0
35
1.04
107779950--107779988
3
13.0
3
84
10
53
69
2
0
28
1.02
107779940--107779987
24
2.0
25
91
4
80
66
4
0
29
1.10
107787745--107787809
32
2.0
32
100
0
130
35
15
18
30
1.92
107788410--107788436
12
2.2
12
100
0
54
14
22
29
33
1.94
107790396--107790600
102
2.0
102
99
0
401
22
16
20
40
1.92
107799520--107799582
26
2.4
27
79
12
78
36
19
6
38
1.77
107799521--107799584
13
4.9
13
72
14
60
37
18
6
37
1.76
107801445--107801473
2
14.5
2
100
0
58
48
0
0
51
1.00
107808073--107808115
19
2.2
20
84
12
54
67
0
2
30
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107809973--107810034
31
2.0
31
87
3
90
43
9
11
35
1.73
107810414--107810517
9
10.6
9
74
13
57
58
0
0
39
1.11
107810433--107810466
12
2.8
12
100
0
68
58
0
0
41
0.98
107810409--107810529
20
6.1
19
67
20
61
56
0
0
42
1.11
107811276--107811332
28
2.0
28
100
0
114
14
19
21
45
1.85
107815126--107815164
13
2.7
15
84
11
55
69
0
10
20
1.17
107815446--107815470
7
3.6
7
100
0
50
64
12
0
24
1.27
107816832--107816871
21
1.9
21
90
10
64
42
0
10
47
1.37
107817947--107817971
5
5.0
5
100
0
50
0
20
0
80
0.72
107821851--107821884
18
1.9
18
88
5
52
32
14
5
47
1.69
107826455--107826494
21
2.0
21
85
5
55
60
5
12
22
1.52
107828509--107828617
37
2.9
37
95
0
191
26
31
19
22
1.98
107828820--107828992
47
3.7
47
89
0
274
26
28
11
33
1.91
107828913--107828984
22
3.1
22
64
24
58
23
29
13
33
1.93
107837869--107837912
19
2.3
20
84
7
56
27
20
11
40
1.86
107842064--107842597
134
4.0
134
99
0
1041
26
21
23
27
1.99
107842162--107842757
46
13.2
46
64
12
232
26
21
23
28
1.99
107842533--107842690
45
3.4
45
67
17
133
29
18
23
28
1.98
107842479--107842699
95
2.4
88
85
11
318
28
20
23
27
1.99
107842499--107842692
95
2.0
95
97
0
370
29
20
22
27
1.98
107842365--107842797
229
1.9
229
96
0
803
27
21
22
28
1.99
107842805--107843576
132
5.8
132
95
0
1292
27
17
25
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107845576--107845699
46
2.8
46
91
3
200
27
22
16
33
1.96
107845576--107845810
37
5.8
45
87
8
207
26
21
15
36
1.93
107845661--107845837
37
4.8
37
95
0
300
26
20
13
38
1.90
107853078--107853201
46
2.8
46
91
3
200
27
22
16
33
1.96
107853078--107853312
37
5.8
45
87
8
207
26
21
15
36
1.93
107853163--107853339
37
4.8
37
95
0
300
26
20
13
38
1.90
107858424--107858473
26
2.0
24
88
7
73
64
6
0
30
1.18
107858444--107858502
21
2.8
21
78
12
59
69
8
0
22
1.15
107858549--107858581
15
2.1
16
88
11
50
69
0
0
30
0.88
107864711--107864746
3
12.0
3
100
0
72
0
33
0
66
0.92
107867644--107867755
56
2.0
55
96
1
206
22
15
10
51
1.73
107867927--107867958
15
2.1
15
100
0
64
37
25
12
25
1.91
107868551--107868626
20
3.8
20
75
11
66
57
1
2
38
1.21
107868549--107868605
10
5.8
10
76
10
55
52
0
3
43
1.18
107868541--107868614
29
2.5
30
85
8
91
56
1
4
37
1.27
107870483--107870512
15
1.9
16
93
6
53
46
0
6
46
1.29
107870676--107870722
16
2.8
16
81
18
60
21
6
0
72
1.07
107870957--107871005
12
4.1
12
76
10
55
30
0
0
69
0.89
107871022--107871102
40
2.0
40
85
0
108
24
2
9
62
1.38
107877237--107877304
29
2.3
30
78
17
79
58
7
4
29
1.45
107882309--107882348
20
2.0
20
85
9
55
70
5
7
17
1.30
107883076--107883106
16
1.9
16
93
0
53
64
3
0
32
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107887298--107887323
5
5.2
5
100
0
52
19
0
0
80
0.71
107892827--107892876
17
2.7
20
78
18
70
10
0
44
46
1.37
107897466--107897515
17
2.7
20
78
18
70
10
0
44
46
1.37
107898440--107898562
52
2.3
52
92
4
201
35
15
8
39
1.79
107902897--107902936
11
3.6
11
79
0
53
22
10
7
60
1.54
107903758--107903874
61
1.9
62
87
6
177
36
15
4
43
1.66
107904272--107904369
46
2.1
46
96
0
178
52
5
10
32
1.57
107904302--107904369
15
4.5
15
72
17
59
51
4
8
35
1.53
107913714--107913747
17
2.0
17
94
0
59
50
0
0
50
1.00
107917558--107917601
21
2.1
21
95
0
79
38
4
34
22
1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356