genome.fa.s11.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  149  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47954616--47955052	143	3.1	143	90	3	693	29	30	8	31	1.86
47958208--47958236	13	2.2	13	100	0	58	34	27	24	13	1.93
47971523--47971561	15	2.5	15	91	4	60	15	12	15	56	1.68
47974312--47974406	49	1.9	49	91	0	154	28	16	26	28	1.97
47977566--47977761	42	4.7	42	82	5	234	31	25	13	30	1.93
47977566--47977742	83	2.1	84	86	8	245	30	24	14	30	1.94
47977598--47977762	83	2.0	84	84	8	221	32	25	12	29	1.93
47978206--47978235	14	2.2	13	94	5	51	56	13	3	26	1.52
47983757--47984280	261	2.0	260	92	0	868	30	17	25	25	1.97
47992119--47992146	7	4.0	7	100	0	56	28	14	0	57	1.38
47992375--47992485	26	4.3	26	85	5	147	27	22	19	29	1.98
47992535--47992591	20	2.8	20	91	0	96	31	19	14	35	1.91
47992535--47992590	11	5.5	11	73	16	57	30	19	14	35	1.91
47999455--47999482	5	5.6	5	100	0	56	17	0	0	82	0.68
48000598--48000655	11	5.6	11	74	15	61	34	18	10	36	1.85
48000598--48000654	20	2.8	20	94	0	96	35	19	10	35	1.86
48001017--48001056	21	2.0	20	90	5	62	20	40	20	20	1.92
48003695--48003779	43	2.0	43	82	13	104	27	24	18	29	1.98
48004520--48004571	22	2.4	22	100	0	104	26	25	19	28	1.98
48004542--48004613	35	2.1	35	100	0	144	31	19	19	29	1.96
48006984--48007085	43	2.4	41	79	6	116	23	17	26	32	1.97
48014543--48014657	42	2.7	42	75	15	112	26	17	23	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48014838--48014925	36	2.5	36	90	3	135	39	7	19	32	1.81
48015428--48015475	25	1.9	25	100	0	96	29	4	29	37	1.76
48024157--48024208	24	2.2	24	82	6	61	48	25	5	21	1.72
48024385--48024559	59	3.0	56	85	9	217	33	33	15	18	1.92
48026273--48026450	46	3.8	46	75	5	173	28	27	20	23	1.99
48026281--48026452	93	1.8	93	88	2	265	27	28	20	23	1.99
48026324--48026467	46	3.1	47	71	21	124	29	27	19	23	1.98
48031234--48031430	7	27.7	7	78	7	74	42	34	0	23	1.55
48031285--48031407	21	5.8	21	77	1	102	42	37	0	20	1.52
48031810--48032046	116	2.1	114	81	6	273	29	21	17	31	1.96
48032002--48032113	40	2.8	40	77	0	116	32	18	19	29	1.96
48031867--48032314	188	2.3	189	81	4	506	31	19	17	30	1.96
48032169--48032335	40	4.3	40	80	6	180	29	17	19	32	1.95
48032169--48032335	76	2.1	78	84	4	212	29	17	19	32	1.95
48032539--48032563	10	2.5	10	100	0	50	28	0	40	32	1.57
48033575--48033652	27	2.9	27	84	3	104	29	19	8	42	1.81
48033638--48033743	27	3.9	27	89	0	131	39	22	7	30	1.82
48033643--48033769	54	2.4	54	84	0	173	39	21	8	30	1.83
48033670--48033797	27	4.7	27	82	6	152	38	22	9	29	1.86
48033787--48033893	27	4.0	27	86	2	135	34	16	21	27	1.95
48033753--48033893	54	2.6	54	81	6	144	35	17	17	29	1.93
48033776--48033893	54	2.2	54	83	6	150	35	16	20	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48034099--48034170	25	2.9	24	85	4	81	30	23	20	25	1.99
48042066--48042151	44	1.9	45	88	2	129	19	17	27	34	1.95
48047584--48047759	46	3.8	46	76	10	187	20	21	30	28	1.98
48047580--48047752	93	1.9	93	92	0	292	20	21	30	27	1.98
48050632--48050677	23	2.0	23	100	0	92	21	8	26	43	1.81
48050728--48050807	15	5.4	15	78	12	85	10	17	12	60	1.59
48050719--48050806	30	3.0	30	80	11	92	10	17	14	57	1.64
48053143--48053318	46	3.8	44	73	11	149	21	21	29	27	1.98
48053139--48053311	93	1.9	93	87	2	258	21	21	30	26	1.99
48055824--48055852	15	2.0	15	93	6	51	41	6	17	34	1.76
48058164--48058224	32	1.9	32	96	0	113	21	19	8	50	1.73
48058168--48058232	32	2.1	31	91	8	107	18	18	7	55	1.66
48075579--48075748	40	4.3	40	86	0	207	25	30	21	22	1.99
48088084--48088192	37	2.9	37	95	0	191	26	31	19	22	1.98
48088338--48088522	48	3.8	48	90	4	291	29	26	7	36	1.84
48088338--48088521	98	1.9	97	91	4	300	29	26	7	36	1.84
48088495--48088779	47	6.1	47	90	0	426	25	29	11	32	1.92
48088630--48088705	23	3.2	25	65	30	65	23	32	13	30	1.93
48088679--48088750	22	3.1	22	64	24	58	23	29	13	33	1.93
48092708--48092817	28	3.9	28	85	0	148	35	30	9	24	1.87
48092807--48092908	40	2.5	41	87	3	136	34	22	17	25	1.96
48112417--48112546	66	2.0	65	80	4	145	24	22	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48131951--48131985	17	2.0	18	88	5	54	11	42	31	14	1.81
48133323--48133458	28	4.9	28	90	3	193	29	34	12	23	1.92
48133348--48133397	16	3.4	16	68	21	54	28	40	10	22	1.86
48141111--48141150	20	2.0	20	100	0	80	30	5	35	30	1.79
48142889--48143407	44	11.6	44	68	12	207	33	17	19	29	1.95
48143020--48143405	135	2.8	136	85	1	513	33	17	18	29	1.95
48143578--48143628	22	2.5	22	81	12	63	62	15	5	15	1.50
48144702--48144836	4	33.5	4	64	12	53	24	11	0	63	1.32
48144770--48144862	23	4.0	23	70	10	64	25	9	0	64	1.24
48144883--48144912	15	2.0	15	93	0	51	0	16	0	83	0.65
48145029--48145113	40	2.1	42	80	10	97	16	3	7	72	1.20
48152075--48152213	55	2.4	58	78	7	151	30	23	16	29	1.96
48173130--48173300	46	3.7	45	75	13	150	23	29	18	28	1.98
48173033--48173303	94	2.9	94	78	11	281	23	28	18	28	1.98
48177467--48178194	98	7.5	94	87	4	952	30	13	30	26	1.93
48177489--48178194	145	4.9	143	93	1	1011	30	13	30	26	1.94
48177784--48177859	24	3.2	24	63	17	59	27	15	31	25	1.96
48177467--48178194	243	3.0	243	92	2	1157	30	13	30	26	1.93
48178168--48178258	46	2.0	46	84	0	119	32	9	31	25	1.89
48178406--48178567	37	4.4	37	96	0	297	24	17	33	24	1.97
48179840--48180230	40	9.8	40	92	0	622	22	21	29	25	1.99
48180407--48180457	25	2.0	25	84	0	66	27	11	31	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48180442--48180550	57	1.9	57	88	1	164	23	19	28	28	1.98
48182040--48182170	39	3.1	41	62	21	99	40	6	23	29	1.80
48182001--48182179	85	2.1	85	97	0	340	37	8	27	26	1.85
48184358--48184987	47	13.1	47	86	5	837	30	13	30	26	1.93
48184358--48184987	98	6.5	94	89	3	837	30	13	30	26	1.93
48184358--48184987	145	4.4	141	91	2	846	30	13	30	26	1.93
48184577--48184652	24	3.2	24	62	23	61	28	13	32	25	1.93
48184961--48185051	46	2.0	46	82	0	110	32	9	29	27	1.89
48185196--48185304	37	2.9	37	94	0	182	23	19	30	26	1.98
48189793--48189835	15	2.9	14	80	10	50	67	6	9	16	1.40
48189795--48189824	15	2.0	15	93	0	51	70	6	10	13	1.34
48193409--48193448	21	1.9	21	90	10	64	50	12	0	37	1.41
48194444--48194481	2	19.0	2	100	0	76	0	50	0	50	1.00
48206616--48206778	24	6.7	24	75	6	157	23	12	31	31	1.92
48206624--48206763	74	1.9	75	83	7	187	23	11	32	32	1.90
48213415--48213576	47	3.5	47	78	12	131	33	27	13	25	1.93
48213444--48213580	47	2.9	49	83	6	176	33	27	13	24	1.94
48213651--48214658	336	3.0	336	98	0	1928	33	20	8	38	1.82
48220110--48220194	41	2.0	42	84	2	109	29	24	18	27	1.98
48228406--48228447	20	2.2	19	83	12	50	16	19	4	59	1.54
48240865--48240907	11	3.9	11	93	0	77	41	18	0	39	1.51
48240833--48240907	32	2.3	33	86	2	98	41	17	1	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48240840--48240907	22	3.1	22	81	8	77	38	17	1	42	1.59
48242126--48242168	7	6.0	7	86	2	59	25	4	13	55	1.58
48242126--48242182	21	2.7	20	78	8	60	26	3	14	56	1.54
48242164--48242188	7	3.6	7	100	0	50	28	0	16	56	1.41
48249144--48249172	12	2.3	13	94	5	51	65	6	6	20	1.40
48253631--48253887	40	6.5	40	89	2	299	24	27	24	23	2.00
48269692--48269789	28	3.5	28	81	2	108	32	26	13	27	1.93
48269692--48269758	27	2.4	27	85	2	89	34	25	11	28	1.91
48272678--48272756	37	2.1	37	88	4	115	25	30	18	25	1.98
48272875--48273365	47	10.4	47	94	0	811	29	29	8	32	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356