genome.fa.s11.2.7.7.80.10.50.1000.308.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  308  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100163387--100163451	18	3.6	18	72	4	58	47	12	9	30	1.72
100163397--100163448	18	2.8	19	82	5	70	51	11	5	30	1.61
100164715--100164755	20	2.2	18	91	8	64	0	29	2	68	1.03
100164958--100164992	16	2.3	15	90	5	52	51	2	0	45	1.16
100167330--100167387	30	1.9	30	89	0	89	32	13	27	25	1.94
100167771--100167941	47	3.7	46	79	9	154	27	21	29	22	1.99
100167731--100167942	47	4.6	46	76	10	150	27	21	27	23	1.99
100182451--100182525	30	2.5	28	76	19	89	33	1	0	65	1.01
100182466--100182528	28	2.2	29	88	5	92	33	1	0	65	1.03
100182490--100182518	12	2.5	12	94	5	51	34	0	0	65	0.93
100182453--100182549	21	4.8	21	72	16	62	32	2	1	63	1.12
100182652--100182701	17	2.9	17	96	0	91	36	8	0	56	1.29
100182640--100182762	12	10.4	12	68	21	64	30	7	0	60	1.29
100182622--100182719	44	2.2	43	79	13	110	30	7	2	60	1.35
100182753--100182806	21	2.7	19	81	13	63	33	3	3	59	1.33
100182753--100182814	21	3.0	21	72	23	60	30	3	4	61	1.33
100194867--100195169	44	6.8	44	77	8	274	30	15	26	28	1.96
100194867--100195105	89	2.7	89	80	7	281	29	15	25	28	1.96
100194902--100195144	132	1.8	135	88	4	377	31	14	25	28	1.95
100196214--100196291	39	2.0	39	100	0	156	30	15	23	30	1.95
100201615--100201651	18	2.1	18	90	10	58	32	27	13	27	1.94
100210170--100210219	26	1.9	26	100	0	100	52	30	6	12	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100217605--100217639	13	2.7	13	95	0	61	20	42	25	11	1.85
100230204--100230228	13	1.9	13	100	0	50	56	12	0	32	1.36
100231268--100231304	11	3.4	11	88	0	56	2	16	21	59	1.49
100234786--100234816	15	2.1	15	100	0	62	38	19	12	29	1.89
100245546--100245580	10	3.4	10	88	4	52	0	20	0	80	0.72
100258270--100258311	5	8.4	5	94	0	75	78	2	0	19	0.86
100266643--100266733	46	2.0	46	86	0	128	27	31	6	34	1.83
100266750--100266825	22	3.3	22	66	28	59	23	27	13	35	1.92
100266747--100267144	47	8.5	47	91	1	602	25	28	12	33	1.92
100266845--100266919	22	3.3	22	66	29	57	25	30	12	32	1.92
100266713--100267179	141	3.3	141	88	1	623	26	28	11	33	1.91
100275538--100275576	6	6.5	6	90	0	60	48	10	17	23	1.78
100275538--100275576	12	3.2	12	92	0	69	48	10	17	23	1.78
100276516--100276569	16	3.4	17	72	12	51	40	3	0	55	1.17
100278693--100278720	4	7.0	4	100	0	56	25	0	25	50	1.50
100291207--100291306	49	2.0	49	88	3	148	59	10	10	21	1.59
100293972--100294020	21	2.3	21	82	6	64	28	6	2	63	1.30
100294666--100294710	7	6.4	7	85	10	65	31	37	2	28	1.69
100295341--100295386	17	2.7	17	87	12	60	43	0	2	54	1.12
100295353--100295395	17	2.7	16	85	7	52	46	0	0	53	1.00
100298092--100298144	25	2.2	23	83	12	63	28	11	1	58	1.43
100298153--100298193	21	1.9	22	90	5	66	21	12	7	58	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100300514--100300632	46	2.6	46	89	2	177	20	24	13	42	1.88
100316932--100317078	42	3.5	42	76	15	124	30	15	24	29	1.96
100319325--100319454	47	2.8	47	88	4	183	33	25	14	26	1.94
100324926--100324950	11	2.3	11	100	0	50	24	8	40	28	1.83
100326232--100326454	39	5.7	40	85	8	266	25	22	27	24	2.00
100326232--100326454	79	2.8	81	84	9	282	25	22	27	24	2.00
100326232--100326487	79	3.3	79	81	10	217	26	21	27	24	1.99
100337503--100337790	47	6.2	47	89	2	429	31	10	31	26	1.89
100337580--100337654	23	3.2	23	63	29	59	36	8	28	28	1.85
100337921--100338000	37	2.2	37	84	4	99	23	16	31	28	1.96
100343724--100343875	42	3.6	42	79	5	171	28	15	26	29	1.96
100356831--100356935	55	1.9	55	82	3	131	26	30	23	19	1.98
100357453--100357498	23	2.0	23	82	0	56	23	32	8	34	1.86
100370824--100370875	27	1.9	27	88	0	77	34	21	17	26	1.95
100371146--100371212	34	2.0	34	91	5	109	29	17	23	28	1.97
100375435--100375467	15	2.2	15	94	0	57	30	6	0	63	1.18
100384831--100384861	16	1.9	16	100	0	62	25	6	0	67	1.14
100388121--100388183	28	2.4	25	81	7	72	68	1	1	28	1.08
100388119--100388193	28	2.8	26	76	11	71	66	2	1	29	1.13
100388240--100388273	8	4.0	8	88	11	50	73	0	0	26	0.83
100388254--100388323	23	2.9	23	75	14	70	48	1	4	45	1.30
100388626--100388678	15	3.9	14	81	13	58	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100388627--100388680	6	8.0	7	78	19	53	40	0	0	59	0.98
100388626--100388670	15	3.2	14	87	9	65	35	0	0	64	0.94
100388618--100388693	19	3.9	19	71	21	68	40	0	0	59	0.98
100394427--100394490	32	2.0	32	96	0	119	32	35	9	21	1.86
100407877--100408180	35	8.7	35	80	3	292	31	23	13	31	1.93
100407879--100408180	70	4.3	70	84	2	365	31	23	12	31	1.92
100407879--100408180	105	2.9	105	86	1	399	31	23	12	31	1.92
100409567--100409597	13	2.4	13	100	0	62	41	6	29	22	1.78
100437662--100437763	35	2.9	35	76	0	114	26	8	20	44	1.81
100437836--100437941	50	2.1	52	83	3	135	31	3	19	45	1.68
100438764--100438840	38	2.0	38	97	0	145	27	10	23	38	1.87
100442676--100442712	17	2.2	17	86	13	51	43	18	8	29	1.79
100450456--100450495	20	2.0	20	100	0	80	40	10	25	25	1.86
100451633--100451687	20	2.7	20	78	16	58	40	3	1	54	1.28
100451963--100452000	13	2.8	14	84	4	51	76	0	7	15	1.01
100452038--100452068	16	2.0	15	93	6	53	70	0	29	0	0.87
100452089--100452123	13	2.7	13	100	0	70	34	0	20	45	1.51
100453073--100453183	45	2.5	45	88	2	170	21	18	18	41	1.90
100459240--100459350	38	3.0	37	72	18	97	38	1	2	56	1.24
100459300--100459356	20	2.8	20	82	15	71	42	1	1	54	1.21
100459291--100459339	25	1.9	26	83	4	64	38	2	0	59	1.09
100459599--100459623	3	8.3	3	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100459630--100459667	13	2.8	14	84	4	51	76	0	7	15	1.01
100459705--100459735	16	2.0	15	93	6	53	70	0	29	0	0.87
100460727--100460837	45	2.5	45	85	2	152	22	18	18	41	1.90
100461532--100461564	13	2.5	13	90	0	57	81	0	0	18	0.68
100461954--100462005	26	2.1	25	85	7	70	50	5	3	40	1.45
100462757--100462790	16	2.2	15	89	5	50	38	0	0	61	0.96
100464049--100464082	15	2.3	15	90	5	52	70	0	29	0	0.87
100465395--100465512	46	2.6	45	86	5	148	28	19	28	22	1.98
100465575--100465754	49	3.7	49	79	2	157	29	19	26	25	1.98
100465532--100465747	98	2.3	96	81	6	235	26	18	27	27	1.98
100475242--100475342	49	2.1	49	100	0	202	38	17	12	30	1.88
100477517--100477615	33	3.0	33	90	0	162	18	10	40	31	1.83
100484345--100484650	154	2.0	154	99	0	603	44	8	17	29	1.79
100484660--100484692	14	2.4	14	100	0	66	48	9	30	12	1.71
100487121--100487175	27	2.0	27	83	13	69	21	29	1	47	1.61
100502092--100502163	21	3.2	21	66	27	58	36	11	26	26	1.90
100502086--100502224	46	3.0	46	90	1	206	38	14	24	22	1.91
100502094--100502261	46	3.5	48	86	6	200	41	13	24	20	1.88
100506873--100506919	20	2.6	17	76	20	51	51	0	0	48	1.00
100506880--100506919	20	2.0	20	100	0	80	50	0	0	50	1.00
100507000--100507045	19	2.3	20	92	3	76	47	15	10	26	1.78
100508550--100508593	13	3.6	13	82	17	58	40	47	2	9	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100508595--100508658	6	10.2	6	74	15	58	73	1	1	23	1.01
100508621--100508659	20	2.0	20	89	0	60	76	2	2	17	1.01
100508677--100508744	9	7.6	9	83	6	84	29	11	16	42	1.83
100512662--100512709	24	2.0	24	100	0	96	41	29	4	25	1.74
100513487--100513567	41	2.0	41	95	0	144	41	12	20	24	1.87
100516777--100516905	31	4.3	30	80	10	147	31	20	3	44	1.69
100516790--100516846	17	3.6	17	67	23	52	35	19	1	43	1.61
100518214--100518256	12	3.4	12	78	12	50	65	9	6	18	1.44
100522625--100522705	42	1.9	42	100	0	162	29	12	28	29	1.93
100523260--100523325	9	7.4	9	76	17	59	63	1	0	34	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356