Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  189  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61497438--61497517
29
2.8
28
88
3
115
23
15
33
27
1.94
61514828--61514866
17
2.3
17
86
0
51
38
25
12
23
1.90
61516519--61516583
25
2.7
23
84
11
78
29
10
15
44
1.80
61516543--61516590
25
1.9
25
86
0
69
31
10
18
39
1.85
61517043--61517069
14
1.9
14
100
0
54
62
7
7
22
1.46
61520678--61521015
48
7.0
48
96
0
604
34
6
28
30
1.82
61521156--61521258
37
2.8
37
92
0
170
24
19
31
25
1.98
61527600--61527653
28
1.9
28
85
7
74
29
25
24
20
1.99
61532728--61532877
49
3.0
50
82
7
196
25
20
24
29
1.99
61534189--61534307
20
5.9
20
80
5
125
37
23
21
16
1.93
61534995--61535021
8
3.4
8
100
0
54
0
22
22
55
1.44
61538930--61538959
6
5.0
6
91
0
51
16
3
13
66
1.37
61542029--61542132
51
2.0
51
96
0
190
36
9
10
43
1.72
61542621--61542655
15
2.3
15
95
0
61
5
22
34
37
1.78
61550402--61550648
49
5.0
50
83
2
309
24
18
27
28
1.98
61550507--61550590
28
3.2
28
65
25
83
23
16
29
29
1.96
61556114--61556171
27
2.2
26
80
20
66
34
1
29
34
1.68
61556116--61556171
28
2.0
27
83
16
71
35
1
28
33
1.68
61557759--61557784
13
2.0
13
100
0
52
38
7
0
53
1.30
61567631--61567839
38
5.0
39
73
19
172
30
14
24
30
1.95
61567668--61567799
48
2.8
48
85
1
185
31
15
22
30
1.95
61574085--61574242
37
4.2
36
73
14
124
43
15
18
23
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61574189--61574763
77
7.5
76
74
8
321
44
15
15
25
1.85
61574367--61574664
76
3.9
77
78
8
245
44
15
14
25
1.84
61574326--61574677
153
2.3
151
80
5
343
45
15
14
24
1.83
61574474--61574761
153
1.9
153
84
6
386
43
16
14
25
1.85
61582298--61582522
40
5.7
40
82
6
233
25
27
20
25
1.99
61582454--61582531
40
1.9
41
82
10
97
26
28
20
24
1.99
61585780--61585877
40
2.5
40
83
3
117
41
15
16
26
1.88
61586190--61586238
25
2.0
25
87
0
71
34
14
18
32
1.91
61617276--61617334
20
3.1
19
76
14
59
40
16
15
27
1.89
61617800--61617906
52
2.1
52
96
0
196
37
7
15
39
1.76
61618933--61618998
27
2.4
28
82
12
84
33
4
1
60
1.26
61621344--61621382
19
2.0
19
85
5
51
41
2
2
53
1.28
61624119--61624163
6
7.0
6
85
9
54
17
2
0
80
0.82
61624120--61624167
15
3.4
15
72
16
57
18
2
0
79
0.84
61624117--61624171
27
2.0
27
100
0
110
18
3
0
78
0.90
61624121--61624187
27
2.4
27
87
2
89
16
8
0
74
1.05
61624125--61624217
17
5.6
17
70
21
63
11
12
0
75
1.05
61625245--61625292
14
3.4
14
85
11
62
70
6
0
22
1.09
61625254--61625304
16
3.3
16
84
13
63
72
9
0
17
1.11
61625909--61625939
16
1.9
16
100
0
62
38
25
6
29
1.81
61627908--61627959
20
2.5
20
87
3
68
50
9
3
36
1.54
61631008--61631190
90
2.0
90
93
0
312
51
7
7
33
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61634424--61634470
23
2.1
22
84
11
60
59
2
2
36
1.21
61634895--61634934
21
1.9
21
84
0
53
50
20
7
22
1.73
61636676--61636701
6
4.3
6
100
0
52
53
30
0
15
1.42
61636676--61636714
18
2.2
18
85
0
51
48
33
0
17
1.48
61636767--61636832
29
2.2
29
80
15
73
60
0
3
36
1.12
61637298--61637346
20
2.4
21
83
6
57
38
4
2
55
1.31
61638675--61638719
12
3.8
11
85
8
54
71
4
2
22
1.15
61639028--61639057
3
10.0
3
100
0
60
66
0
0
33
0.92
61640842--61640951
45
2.5
45
81
1
123
29
18
17
35
1.93
61640983--61641197
96
2.2
96
87
1
315
27
20
19
33
1.96
61641347--61641468
45
2.7
45
73
13
117
29
27
14
28
1.95
61641958--61642081
65
1.9
65
86
0
176
49
9
20
20
1.77
61642524--61642590
1
67.0
1
75
0
62
0
11
0
88
0.53
61642524--61642590
7
9.4
7
83
16
77
0
11
0
88
0.53
61642523--61642590
29
2.4
27
85
9
100
0
13
0
86
0.56
61647600--61647629
16
1.9
15
93
6
51
73
0
3
23
0.98
61647944--61648032
3
30.0
3
97
2
171
66
0
0
33
0.92
61650723--61650895
46
3.7
46
75
14
176
22
19
27
30
1.98
61650720--61650890
93
1.8
93
91
2
281
22
19
28
29
1.98
61651120--61651157
19
2.0
20
85
15
53
36
0
23
39
1.55
61663781--61664083
40
7.6
40
89
2
396
27
28
20
24
1.99
61671775--61672077
40
7.6
40
89
2
396
27
28
20
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61673827--61674129
40
7.6
40
89
2
396
27
28
20
24
1.99
61678186--61678363
27
6.6
27
85
3
214
26
14
28
30
1.95
61678187--61678342
82
1.9
81
89
3
242
26
14
28
30
1.95
61678183--61678363
82
2.2
81
84
2
238
27
14
27
30
1.95
61684763--61684935
46
3.7
46
77
13
201
21
19
27
30
1.98
61684760--61684930
93
1.8
93
94
0
306
21
19
28
29
1.98
61685160--61685197
19
2.0
20
85
15
53
36
0
23
39
1.55
61687426--61687516
47
2.0
46
85
10
123
20
17
29
31
1.96
61687748--61687779
11
2.8
11
95
4
55
25
9
3
62
1.40
61689899--61690063
46
3.5
46
78
8
147
27
18
30
23
1.97
61689899--61690114
47
4.6
48
76
10
162
26
18
29
25
1.98
61700825--61701000
77
2.3
75
89
4
255
32
25
19
22
1.97
61703652--61704017
46
7.7
49
71
12
185
25
27
19
28
1.99
61703846--61704017
92
1.8
93
82
6
222
23
27
20
28
1.99
61716431--61716542
29
4.0
27
70
14
82
28
14
32
25
1.94
61716863--61716893
15
2.1
15
100
0
62
29
0
25
45
1.54
61724129--61724225
41
2.3
42
82
7
117
23
24
22
28
1.99
61729886--61730015
47
2.8
47
90
4
192
22
16
28
33
1.95
61742578--61742616
21
1.9
20
85
15
53
23
15
15
46
1.83
61743932--61744002
34
2.1
34
84
10
92
40
11
26
21
1.87
61745210--61745245
15
2.3
15
90
4
54
2
22
0
75
0.94
61747880--61747951
34
2.1
35
84
7
94
41
11
26
20
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61751649--61751780
42
3.2
41
81
13
146
25
9
14
50
1.73
61754124--61754518
47
8.4
47
91
1
558
32
10
30
25
1.89
61754637--61754716
37
2.2
37
86
4
108
23
17
31
27
1.97
61756039--61756241
45
4.6
45
89
4
299
23
22
28
25
1.99
61763276--61763453
27
6.6
27
83
5
180
29
28
15
27
1.96
61763297--61763452
82
1.9
81
86
3
224
28
28
15
27
1.96
61764001--61764025
13
1.9
13
100
0
50
32
16
20
32
1.94
61777072--61777265
85
2.3
85
85
0
262
25
19
24
30
1.98
61777209--61777310
42
2.4
43
81
4
118
29
20
24
25
1.99
61777080--61777310
85
2.7
85
81
2
259
27
19
25
28
1.98
61779758--61779865
26
4.2
26
93
0
189
31
7
24
37
1.83
61781455--61781595
27
5.2
27
82
11
182
18
24
23
33
1.97
61781452--61781595
54
2.7
54
94
2
245
18
25
23
33
1.97
61783148--61783488
169
2.0
169
98
0
655
39
15
14
30
1.87
61790681--61790717
19
1.9
19
88
0
56
32
16
13
37
1.87
61790682--61790740
31
1.9
30
86
3
82
33
15
13
37
1.86
61793010--61793057
20
2.3
21
78
7
53
37
10
2
50
1.49
61796425--61796484
16
3.8
16
75
0
57
15
23
1
60
1.44
61807580--61807618
17
2.3
17
86
0
51
28
12
41
17
1.87
61813837--61813881
23
2.0
23
86
8
65
24
4
2
68
1.19
61815337--61815397
19
3.2
19
77
11
61
67
1
3
27
1.16
61815346--61815397
20
2.7
19
80
11
61
69
1
3
25
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61821206--61821364
43
3.7
43
79
10
164
29
25
19
25
1.98
61821206--61821364
44
3.7
41
79
9
167
29
25
19
25
1.98
61824715--61824846
40
3.3
40
86
2
167
27
28
19
25
1.99
61824831--61824908
40
1.9
41
82
10
97
26
28
21
23
1.99
61832050--61832232
40
4.6
39
82
4
188
26
27
21
25
1.99
61832164--61832241
40
1.9
41
82
10
97
26
28
21
23
1.99
61835169--61835346
49
3.7
49
80
6
168
32
21
23
23
1.98
61835169--61835346
98
1.8
97
85
3
250
32
21
23
23
1.98
61840028--61840066
20
2.1
19
85
9
53
51
17
28
2
1.59
61840301--61840392
46
2.0
46
95
0
166
36
23
18
20
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356