genome.fa.s11.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  133  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42603312--42603430	42	2.8	43	80	5	143	27	25	21	26	1.99
42603312--42603468	86	1.8	85	84	4	217	28	25	19	26	1.99
42613002--42613799	49	16.5	49	91	2	1285	33	8	28	29	1.86
42615399--42615438	20	2.0	20	85	5	53	52	17	15	15	1.75
42618130--42618196	20	3.3	20	89	0	98	32	11	20	34	1.90
42618246--42618399	24	6.4	24	93	0	263	29	20	22	28	1.98
42620758--42620833	40	1.9	40	86	10	111	18	15	30	35	1.92
42622318--42622381	31	2.1	31	90	0	101	26	21	14	37	1.92
42622595--42622672	25	3.2	24	78	7	95	32	21	17	28	1.96
42622595--42622697	25	4.2	25	75	11	88	30	21	20	28	1.98
42630407--42630470	31	2.1	31	96	0	119	29	25	10	34	1.90
42630696--42630769	25	3.0	25	76	4	69	29	24	22	22	1.99
42630722--42630786	25	2.6	25	82	4	69	29	23	21	26	1.99
42630685--42630786	51	2.1	48	82	10	118	29	22	19	28	1.98
42630842--42630898	9	5.9	9	80	15	69	40	19	3	36	1.69
42630834--42630920	20	4.3	20	88	2	131	36	18	8	36	1.80
42630834--42630921	9	8.7	11	74	17	66	37	18	7	36	1.80
42634121--42634305	50	3.7	49	82	4	228	25	16	27	31	1.96
42634121--42634305	99	1.9	100	88	1	282	25	16	27	31	1.96
42646571--42646677	52	2.1	52	92	0	178	27	14	22	36	1.92
42653439--42653502	12	5.3	12	87	7	94	42	0	12	45	1.42
42659144--42659368	40	5.6	40	85	6	294	24	28	22	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42659144--42659368	83	2.8	82	86	6	309	24	28	22	24	1.99
42677701--42680307	616	4.3	619	87	7	3796	33	18	10	37	1.85
42676289--42680307	623	6.6	620	88	5	6053	34	18	10	37	1.85
42681688--42681871	40	4.6	40	83	4	192	25	27	21	25	2.00
42681803--42681880	40	1.9	41	82	10	97	26	28	21	23	1.99
42688893--42688922	15	1.9	16	93	6	53	50	20	0	30	1.49
42689504--42689634	40	3.3	40	91	0	190	25	28	22	24	1.99
42689502--42689686	40	4.7	39	83	7	169	25	28	21	24	1.99
42697169--42697349	40	4.6	40	85	4	242	25	25	23	24	2.00
42704671--42704745	37	2.0	37	84	0	96	44	30	8	17	1.77
42706256--42706301	21	2.3	20	78	14	51	45	17	6	30	1.73
42706875--42706927	10	5.1	10	80	8	52	58	1	1	37	1.20
42706885--42706928	22	2.0	22	95	0	79	54	2	0	43	1.12
42715768--42715792	5	5.0	5	100	0	50	0	40	0	60	0.97
42717415--42717639	49	4.5	48	84	7	272	31	23	18	26	1.97
42724886--42725072	50	3.8	48	81	7	196	30	25	18	25	1.98
42724889--42725071	101	1.8	101	89	2	287	30	25	18	25	1.98
42727939--42727973	17	2.1	17	94	0	61	40	14	17	28	1.88
42731949--42732121	46	3.7	46	77	13	201	22	20	27	28	1.99
42731946--42732116	93	1.8	93	94	0	306	22	21	28	28	1.99
42732346--42732383	19	2.0	20	85	15	53	36	0	23	39	1.55
42735170--42735236	26	2.6	26	92	0	107	40	13	20	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42740700--42740816	56	2.1	56	98	0	225	45	9	23	22	1.81
42741940--42742163	40	5.7	40	83	6	260	24	21	28	25	1.99
42741940--42742163	79	2.8	80	83	6	269	24	21	28	25	1.99
42748624--42748743	56	2.1	56	98	0	231	45	9	23	22	1.81
42749868--42750092	40	5.7	40	86	5	296	24	22	28	25	2.00
42749868--42750125	119	2.2	119	81	6	292	25	21	27	25	1.99
42755697--42755778	27	3.0	27	82	5	103	20	21	20	36	1.95
42765267--42765340	36	2.1	36	84	0	94	44	16	16	22	1.86
42766073--42766127	27	2.0	28	86	6	78	34	7	10	47	1.66
42766495--42766588	31	3.0	31	96	0	179	46	11	19	22	1.81
42771485--42771699	40	5.4	40	94	2	373	26	26	22	23	2.00
42771485--42771699	79	2.7	80	94	3	373	26	26	22	23	2.00
42773898--42773989	27	3.4	27	87	0	139	29	15	19	35	1.92
42773896--42774029	54	2.5	54	83	0	151	29	17	17	34	1.94
42775959--42776091	27	5.0	27	73	1	115	26	16	20	36	1.93
42787614--42787712	48	2.0	49	96	1	182	36	18	15	30	1.91
42790046--42790084	19	2.0	20	85	14	55	30	25	5	38	1.78
42791096--42791149	25	2.2	25	93	0	90	42	22	9	25	1.83
42796120--42796307	40	4.7	40	95	0	322	30	20	26	21	1.98
42799569--42799740	93	1.8	93	93	2	301	29	29	20	20	1.98
42799562--42799737	46	3.8	46	78	14	200	30	29	19	20	1.97
42821455--42821517	26	2.4	25	84	7	81	53	6	1	38	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42823546--42823621	28	2.8	25	75	15	62	44	3	1	50	1.29
42823623--42823695	17	4.3	16	69	27	53	49	0	1	49	1.09
42823636--42823725	34	2.6	34	72	14	78	44	0	2	53	1.13
42824089--42824118	13	2.3	13	100	0	60	50	13	13	23	1.77
42826208--42826248	19	2.2	19	95	0	73	26	17	4	51	1.65
42836932--42836961	16	1.9	16	93	6	53	50	20	0	30	1.49
42843351--42843528	27	6.6	27	82	3	196	26	15	28	29	1.96
42843352--42843507	82	1.9	81	86	3	224	26	16	28	28	1.97
42843348--42843528	82	2.2	81	81	2	220	27	16	27	29	1.97
42848040--42848217	27	6.6	27	81	3	187	27	14	27	30	1.95
42848041--42848196	82	1.9	81	85	6	217	27	14	27	30	1.95
42848037--42848217	82	2.2	81	81	4	213	27	14	27	30	1.95
42854265--42854441	27	6.5	27	85	1	201	25	15	28	30	1.96
42854265--42854420	82	1.9	81	89	3	242	26	15	28	30	1.96
42854261--42854441	82	2.2	81	84	2	238	26	15	27	30	1.96
42863770--42863843	29	2.6	29	84	4	87	28	14	31	25	1.95
42865867--42866014	57	2.6	57	78	9	158	30	22	18	29	1.97
42869204--42869389	40	4.7	40	87	5	227	25	22	26	25	2.00
42869257--42869422	80	2.1	79	82	7	194	27	19	25	26	1.99
42877259--42877404	40	3.6	41	81	9	167	23	22	27	26	2.00
42877259--42877437	80	2.2	80	81	6	195	25	21	26	26	1.99
42892329--42892453	39	3.2	39	89	2	189	23	20	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42892329--42892491	39	4.2	39	85	3	179	23	21	28	26	1.99
42905812--42905873	30	2.1	30	96	0	115	33	17	14	33	1.90
42913809--42913887	37	2.1	37	88	0	113	26	31	17	24	1.97
42914006--42914344	47	7.1	49	91	3	532	28	30	8	31	1.88
42914006--42914344	96	3.5	96	92	1	547	28	30	8	31	1.88
42917922--42918074	40	3.8	40	90	0	225	25	30	20	23	1.99
42917935--42918116	80	2.3	80	85	2	233	24	29	21	23	1.99
42918053--42918150	39	2.5	40	84	5	126	24	27	20	27	1.99
42919422--42919500	37	2.1	37	90	0	122	25	31	18	24	1.98
42919619--42919812	47	4.1	47	89	2	289	27	30	9	31	1.89
42919621--42919809	96	2.0	94	90	2	297	27	31	10	31	1.89
42923575--42923703	38	3.4	38	91	1	195	26	30	20	22	1.99
42931208--42931334	37	3.4	38	87	3	168	25	29	20	24	1.99
42939577--42939748	46	3.7	46	75	13	172	30	27	19	22	1.98
42939584--42939755	93	1.8	93	91	0	281	29	27	20	22	1.99
42939626--42939764	47	3.0	46	70	16	117	30	25	18	24	1.98
42956927--42956965	20	2.0	20	84	0	51	25	25	33	15	1.95
42957212--42957409	27	7.3	26	87	6	270	33	18	22	25	1.97
42957561--42957647	27	3.3	26	79	9	95	20	20	20	37	1.94
42957734--42957779	21	2.1	22	88	4	67	6	0	50	43	1.28
42957803--42957865	28	2.2	28	88	0	90	25	20	22	31	1.98
42970747--42970949	53	3.8	53	76	3	176	19	24	19	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42973739--42974081	40	8.6	40	90	2	467	24	20	27	27	1.99
42981770--42982111	40	8.6	40	89	2	449	24	19	28	27	1.99
42987602--42987668	34	2.0	35	88	11	104	26	19	23	29	1.98
42987607--42987679	34	2.2	33	85	7	94	27	19	23	30	1.98
42994275--42994337	29	2.2	29	79	0	72	31	20	11	36	1.88
42996578--42996630	26	2.0	26	96	0	97	33	15	13	37	1.86
42998989--42999030	18	2.3	18	91	0	75	14	9	11	64	1.50
42998993--42999024	9	3.4	10	83	16	50	18	6	9	65	1.42
42999341--42999399	30	2.0	30	83	6	75	40	3	25	30	1.72
42999737--42999943	53	3.8	53	79	9	233	36	16	25	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356