genome.fa.s11.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  213  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69515219--69515248	9	3.3	9	95	0	51	50	0	23	26	1.50
69516902--69516939	19	2.0	19	85	10	51	13	13	21	52	1.73
69527582--69527714	66	2.0	66	100	0	266	31	15	26	27	1.95
69529597--69529772	46	3.8	46	79	12	198	19	19	30	30	1.97
69529594--69529765	93	1.8	93	92	0	290	20	20	30	29	1.97
69538852--69538881	11	2.7	11	100	0	60	80	13	0	6	0.91
69541530--69541753	40	5.6	40	84	6	292	25	25	23	25	2.00
69541530--69541753	83	2.8	80	87	5	292	25	25	23	25	2.00
69550300--69550402	37	2.9	34	80	8	116	33	7	16	42	1.77
69550447--69550505	9	6.4	9	82	3	64	23	3	18	54	1.59
69554427--69554505	37	2.1	37	90	0	122	25	31	18	24	1.98
69554624--69554940	47	6.7	47	93	0	501	28	29	9	32	1.88
69560704--69560795	42	2.2	41	81	9	105	31	25	18	25	1.98
69562378--69562411	11	2.9	12	86	8	52	55	8	32	2	1.45
69567334--69567739	140	2.9	138	91	1	634	44	4	8	41	1.56
69567334--69567756	138	3.1	137	89	2	630	44	4	8	42	1.55
69571099--69571188	27	3.3	27	84	6	103	40	15	11	33	1.83
69571123--69571188	27	2.4	27	92	0	105	39	16	10	33	1.83
69571194--69571377	27	6.8	27	86	2	217	29	25	8	37	1.84
69571370--69571546	27	6.7	26	81	5	185	41	16	9	32	1.80
69571370--69571547	53	3.3	53	81	7	198	41	16	9	32	1.81
69571356--69571547	80	2.4	80	88	0	267	40	18	9	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69571418--69571575	54	3.0	52	75	12	144	41	18	8	31	1.80
69571691--69571782	27	3.4	27	86	3	114	33	18	26	21	1.96
69573024--69573080	9	5.9	9	73	15	51	35	8	21	35	1.84
69573022--69573092	20	3.5	20	94	0	124	35	11	21	32	1.89
69573033--69573087	11	5.4	11	70	16	55	36	12	20	30	1.90
69573139--69573355	23	9.1	23	85	5	281	28	20	21	29	1.98
69573567--69573625	31	1.9	31	92	0	100	32	16	25	25	1.97
69580717--69580761	15	2.9	15	81	12	54	13	13	20	53	1.72
69585541--69585793	68	3.9	64	78	10	183	24	29	16	29	1.96
69594152--69594264	23	4.8	23	76	13	97	20	22	20	37	1.95
69594180--69594266	23	3.7	23	81	9	106	20	24	20	34	1.97
69594116--69594257	45	3.0	45	77	12	128	22	21	21	35	1.96
69597348--69597445	27	3.5	28	90	2	135	26	13	28	31	1.94
69597376--69597458	27	3.0	27	87	5	96	30	12	25	32	1.92
69599229--69599267	19	2.1	19	85	0	51	35	12	5	46	1.65
69600356--69600421	28	2.3	28	84	10	80	33	24	19	22	1.97
69600356--69600639	29	9.8	28	67	10	88	40	21	13	24	1.90
69600415--69600505	29	3.1	29	74	0	92	41	24	10	23	1.86
69600409--69600638	58	4.0	57	78	3	208	42	20	13	24	1.87
69600533--69600677	29	5.0	29	73	11	102	39	21	15	24	1.91
69600388--69600675	58	5.0	58	77	4	190	40	21	13	25	1.89
69600565--69600717	29	5.3	29	72	12	100	37	19	15	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69604569--69604677	37	2.9	37	91	0	173	27	30	18	23	1.98
69606198--69606352	40	3.9	40	84	6	208	25	28	21	23	1.99
69606198--69606352	79	2.0	80	85	6	217	25	28	21	23	1.99
69608055--69608239	48	3.8	48	90	5	309	30	26	7	35	1.84
69608055--69608238	98	1.9	96	93	4	316	30	26	7	35	1.84
69608209--69608496	47	6.1	47	92	0	459	26	29	11	32	1.91
69608114--69608496	141	2.7	141	84	4	461	27	28	10	33	1.90
69611834--69611900	25	2.7	25	84	9	91	25	16	25	32	1.96
69616056--69616279	40	5.7	40	85	8	275	26	21	27	24	2.00
69616056--69616312	79	3.2	80	82	10	230	27	21	27	24	1.99
69624130--69624353	40	5.7	40	85	8	275	26	22	27	24	2.00
69624130--69624353	79	2.8	80	83	9	280	26	22	27	24	2.00
69628101--69628158	30	1.9	31	92	3	100	34	0	8	56	1.30
69628098--69628174	31	2.4	32	76	8	77	38	0	7	53	1.30
69630361--69630461	50	2.0	49	90	1	157	53	11	4	29	1.58
69650919--69651004	40	2.2	40	87	6	122	24	22	27	25	1.99
69652991--69653070	25	2.9	27	71	17	67	52	5	1	41	1.31
69654978--69655034	18	3.3	18	75	20	59	63	0	8	28	1.24
69658001--69658040	21	2.0	20	90	5	62	35	0	22	42	1.54
69658006--69658048	21	2.1	21	83	12	54	32	2	20	44	1.65
69660442--69660495	20	2.7	21	75	11	60	35	0	7	57	1.27
69661453--69661513	27	2.3	26	86	8	79	40	3	16	39	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69664543--69664580	19	2.0	19	100	0	76	15	10	36	36	1.82
69676464--69676573	55	2.0	55	82	10	136	30	30	26	13	1.94
69691993--69692017	13	1.9	13	100	0	50	32	4	24	40	1.73
69693140--69693261	43	2.8	44	85	7	162	23	18	25	32	1.97
69697697--69697791	25	3.8	25	97	0	172	23	24	26	26	2.00
69698602--69698678	27	2.9	27	79	11	86	20	20	20	37	1.94
69698719--69698770	27	1.9	27	88	7	79	34	11	13	40	1.81
69698782--69698900	27	4.4	27	76	10	102	26	6	23	42	1.79
69698936--69699027	27	3.4	27	86	3	123	43	7	19	29	1.78
69704797--69704954	43	3.7	44	80	7	180	23	17	26	32	1.96
69707187--69707360	87	2.0	87	97	0	330	36	15	22	25	1.93
69709437--69709695	40	6.5	40	94	1	409	25	28	23	22	1.99
69715408--69715571	42	3.9	41	80	4	184	32	15	21	29	1.95
69717846--69717885	21	2.0	21	90	5	64	17	30	42	10	1.82
69721581--69721647	20	3.3	21	89	8	104	35	11	17	34	1.87
69721592--69721647	11	5.5	11	71	16	57	35	12	17	33	1.88
69721697--69721775	23	3.4	24	91	8	128	30	18	22	27	1.98
69735693--69735724	16	2.0	16	93	0	55	25	3	12	59	1.48
69736693--69736802	27	4.1	26	86	10	141	36	21	25	16	1.94
69736693--69736802	54	2.0	54	87	6	161	36	21	25	16	1.94
69739576--69739747	46	3.7	46	80	13	217	20	19	29	29	1.97
69739569--69739740	93	1.8	93	96	0	317	21	20	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69748068--69748098	15	2.1	15	100	0	62	35	19	0	45	1.51
69750281--69750307	11	2.5	11	100	0	54	22	7	18	51	1.70
69751841--69751939	52	2.0	52	80	11	118	45	6	2	46	1.39
69751896--69751929	17	2.0	17	94	0	59	44	5	0	50	1.26
69751901--69751948	17	3.0	16	79	17	55	45	6	2	45	1.40
69751989--69752023	18	2.0	17	88	5	52	40	0	0	60	0.97
69751936--69752169	129	1.8	130	95	0	425	42	2	5	49	1.39
69752118--69752152	18	2.0	17	88	5	52	45	0	0	54	0.99
69752118--69752175	16	3.6	16	78	21	52	44	0	1	53	1.10
69752106--69752377	144	1.9	147	93	3	478	46	2	3	47	1.34
69752262--69752296	18	2.0	17	88	5	52	45	0	0	54	0.99
69752458--69752552	45	2.1	45	88	1	138	32	27	5	34	1.79
69752531--69752563	16	2.1	16	94	0	57	30	36	0	33	1.58
69752544--69752586	21	2.0	21	95	0	77	34	37	0	27	1.57
69755040--69755215	46	3.8	46	78	12	207	20	20	30	28	1.98
69755037--69755208	93	1.8	93	94	0	308	20	20	30	27	1.98
69756549--69756834	27	10.6	27	85	0	367	40	19	8	31	1.82
69756549--69756945	27	14.7	27	81	3	361	38	19	9	32	1.84
69756934--69757226	27	10.9	27	90	0	399	36	18	21	23	1.95
69756927--69757231	81	3.8	80	89	3	441	36	19	20	23	1.95
69757456--69757611	67	2.3	67	91	0	240	19	28	21	30	1.98
69757735--69757806	6	11.8	6	73	19	60	19	13	16	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69757712--69757789	31	2.5	31	91	2	120	19	14	14	52	1.74
69762812--69762921	40	2.8	40	84	6	136	23	28	23	24	2.00
69770338--69770447	40	2.8	41	83	6	138	22	27	24	25	2.00
69773731--69773761	13	2.4	13	88	0	53	51	9	0	38	1.35
69774713--69774790	38	2.0	40	87	7	115	33	25	20	20	1.97
69774714--69774804	38	2.3	39	83	9	105	35	26	19	18	1.95
69776690--69776835	42	3.4	42	77	14	131	34	26	15	23	1.94
69776666--69776805	43	3.3	43	79	12	137	33	26	16	23	1.96
69783443--69783472	15	2.0	15	100	0	60	40	13	13	33	1.83
69785445--69785536	47	2.0	47	91	2	150	26	15	14	44	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356