Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  114  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36290698--36290747
21
2.4
21
96
0
91
22
26
20
32
1.98
36294324--36294348
12
2.1
12
100
0
50
68
0
0
32
0.90
36296578--36296629
18
2.7
19
88
5
70
53
3
7
34
1.48
36296687--36296749
23
2.8
23
83
9
69
71
0
14
14
1.15
36296712--36296749
6
6.5
6
81
6
51
65
0
21
13
1.26
36296763--36296805
22
2.0
21
82
13
52
72
0
25
2
0.97
36296761--36296803
20
2.2
20
83
8
52
74
0
23
2
0.93
36298366--36298412
19
2.5
20
80
16
55
46
0
29
23
1.52
36312019--36312062
23
2.0
22
86
4
61
43
11
4
40
1.61
36312518--36312569
18
2.7
19
88
5
70
53
3
7
34
1.48
36312592--36312640
5
9.8
5
95
0
80
36
0
4
59
1.17
36312707--36312750
20
2.2
20
84
12
54
75
0
25
0
0.81
36312710--36312739
16
1.9
15
93
6
51
73
0
26
0
0.84
36312961--36313007
24
2.0
24
84
16
62
34
0
14
51
1.43
36313172--36313305
37
3.4
40
72
14
116
26
13
25
35
1.93
36314652--36314677
3
8.7
3
100
0
52
69
0
0
30
0.89
36318562--36318617
24
2.3
24
78
0
58
46
25
14
14
1.82
36321109--36321142
17
2.0
17
94
0
59
55
5
20
17
1.62
36321896--36322027
66
2.0
66
96
0
246
34
3
21
40
1.71
36322962--36323072
47
2.4
47
87
0
150
20
18
29
31
1.96
36333174--36333212
19
2.1
19
85
4
53
23
17
5
53
1.63
36341807--36341854
23
2.1
23
92
0
78
66
2
4
27
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36342763--36342892
18
6.9
19
73
11
90
65
1
3
30
1.17
36342800--36342843
9
5.0
9
86
2
63
77
0
2
20
0.88
36342750--36342901
56
2.7
54
81
7
146
67
1
3
27
1.17
36342750--36342871
27
4.5
27
70
13
74
68
1
2
27
1.12
36342763--36342881
9
12.7
9
68
14
53
66
1
2
29
1.14
36342926--36342982
19
2.9
20
73
5
62
63
1
8
26
1.34
36343026--36343114
8
10.8
8
68
15
56
28
3
2
66
1.20
36343014--36343080
26
2.6
24
75
13
62
23
4
4
67
1.28
36344509--36344535
14
1.9
14
100
0
54
33
0
0
66
0.92
36344865--36344892
3
9.3
3
100
0
56
0
32
0
67
0.91
36345913--36345943
3
10.3
3
92
0
53
35
0
0
64
0.94
36349712--36349755
21
2.1
21
95
0
79
29
20
9
40
1.83
36350041--36350089
21
2.3
21
96
0
89
28
4
36
30
1.76
36352265--36352365
48
2.1
48
92
0
166
30
5
12
50
1.64
36352732--36352806
33
2.3
33
85
0
105
30
5
45
18
1.72
36355256--36355326
16
4.4
16
67
12
56
66
12
0
21
1.25
36356479--36356527
23
2.1
23
88
0
71
12
16
20
51
1.76
36356726--36356962
43
5.5
43
83
4
307
25
18
30
25
1.98
36356727--36356963
87
2.7
86
87
3
325
25
18
29
25
1.98
36356698--36356965
130
2.1
130
87
2
378
26
17
30
25
1.98
36357080--36357176
31
3.1
31
93
0
158
55
21
8
14
1.65
36357411--36357502
31
3.0
31
96
0
166
58
20
7
13
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36357026--36357672
326
2.0
326
98
0
1249
48
16
9
24
1.77
36357761--36357803
21
2.0
21
86
0
59
4
37
16
41
1.69
36363306--36363427
9
13.7
9
71
13
74
36
0
16
45
1.53
36363310--36363422
34
3.4
34
74
16
103
37
0
15
46
1.51
36367071--36367326
120
2.1
120
92
1
442
23
17
21
37
1.94
36367076--36367246
40
4.3
40
67
16
111
23
18
22
36
1.95
36379726--36379751
6
4.3
6
100
0
52
84
0
0
15
0.62
36382356--36382549
99
2.0
99
93
0
334
25
16
28
29
1.97
36382364--36382550
49
3.8
49
83
1
248
25
16
27
30
1.96
36384847--36384875
13
2.1
14
93
6
51
44
3
0
51
1.18
36384832--36384928
39
2.8
33
76
19
101
41
4
4
50
1.40
36389379--36389422
22
2.0
22
86
0
61
52
0
0
47
1.00
36389439--36389494
19
3.2
19
70
14
57
48
1
0
50
1.11
36389445--36389492
15
2.9
15
77
17
51
54
2
0
43
1.12
36389651--36389688
13
2.7
14
88
12
60
36
13
7
42
1.73
36389651--36389691
14
3.0
13
92
7
64
36
14
9
39
1.79
36392828--36392859
3
10.7
3
93
0
55
37
0
62
0
0.95
36395243--36395282
18
2.2
18
86
0
53
42
5
2
50
1.37
36395982--36396046
32
2.0
32
96
0
121
40
12
20
27
1.88
36396119--36396157
21
1.9
20
85
15
53
76
0
0
23
0.78
36396119--36396166
22
2.2
22
85
10
64
75
0
0
25
0.81
36400181--36400407
41
5.6
41
88
3
316
25
24
25
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36403787--36403828
8
5.6
8
83
16
63
59
0
0
40
0.97
36403794--36403825
13
2.5
13
89
0
55
59
0
0
40
0.97
36403787--36403828
21
2.0
21
95
0
75
59
0
0
40
0.97
36404712--36404800
44
2.0
44
86
4
126
20
19
23
37
1.94
36407847--36407918
34
2.1
34
92
2
119
29
6
13
50
1.68
36411392--36411435
8
5.9
8
84
10
58
59
0
0
40
0.98
36411390--36411435
16
3.1
16
84
15
71
58
0
0
41
0.98
36411399--36411430
13
2.5
13
94
0
55
59
0
0
40
0.97
36411392--36411435
21
2.1
21
95
0
79
59
0
0
40
0.98
36414758--36414865
26
4.2
26
93
0
189
32
7
24
36
1.83
36416301--36416353
26
2.0
26
82
7
63
39
20
15
24
1.91
36428384--36428487
44
2.4
44
80
6
104
28
16
25
29
1.97
36431928--36432016
23
3.8
23
68
16
74
33
22
26
16
1.96
36431922--36432027
48
2.2
49
79
5
117
34
20
25
18
1.96
36434085--36434244
26
6.2
26
91
0
266
33
7
23
35
1.83
36434085--36434244
52
3.1
52
96
0
293
33
7
23
35
1.83
36435864--36436031
27
6.2
27
87
6
225
18
23
23
34
1.96
36435864--36436031
54
3.1
54
91
3
259
18
23
23
34
1.96
36435864--36436031
81
2.1
81
91
4
268
18
23
23
34
1.96
36437302--36437350
3
17.3
3
76
19
52
69
0
2
28
1.00
36437308--36437346
11
3.5
11
92
0
69
69
0
2
28
1.02
36437309--36437350
19
2.2
19
87
8
59
71
0
2
26
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36438610--36438706
6
16.5
6
69
18
53
73
2
20
4
1.10
36438612--36438715
22
4.7
22
68
22
58
71
1
23
3
1.13
36438660--36438707
5
9.0
5
78
13
51
75
0
25
0
0.81
36438656--36438707
16
3.2
16
94
2
86
75
0
25
0
0.81
36438647--36438713
11
6.0
11
77
18
59
71
1
26
0
0.94
36438663--36438713
12
4.4
12
78
14
54
72
0
27
0
0.85
36439224--36439280
29
2.0
29
100
0
114
35
15
21
28
1.94
36457186--36457268
24
3.5
25
82
8
93
18
22
15
43
1.87
36464040--36464116
13
5.9
13
78
6
75
35
7
20
36
1.82
36466638--36466671
12
2.8
12
86
0
50
61
0
0
38
0.96
36466611--36466671
24
2.5
24
79
10
61
50
0
0
49
1.00
36467534--36467560
4
6.8
4
100
0
54
25
0
0
74
0.83
36468272--36468315
23
2.0
22
81
4
52
65
13
6
13
1.44
36478231--36478273
19
2.3
19
84
8
52
30
4
0
65
1.13
36485454--36485489
11
3.1
12
88
8
56
36
8
8
47
1.64
36487542--36487675
13
10.0
13
70
15
76
35
16
3
44
1.65
36487531--36487640
27
4.1
26
73
21
84
37
16
3
42
1.66
36487531--36487647
40
2.9
40
77
5
119
36
17
3
42
1.66
36487595--36487647
27
2.0
27
84
0
70
35
18
1
43
1.62
36487633--36487689
28
2.0
28
86
0
78
28
12
5
54
1.59
36500926--36500964
21
1.9
20
89
5
60
43
20
7
28
1.79
36502065--36502182
42
2.8
42
83
7
159
28
25
16
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36510742--36510955
46
4.7
43
73
17
148
29
18
28
23
1.97
36538313--36538342
14
2.1
15
93
6
53
63
13
10
13
1.52
36543272--36544211
470
2.0
471
97
0
1765
27
25
18
27
1.98
36546006--36546033
13
2.2
13
100
0
56
17
35
32
14
1.90
36553717--36553808
44
2.1
44
100
0
184
55
10
7
26
1.61
36561904--36561995
44
2.1
44
100
0
184
55
10
7
26
1.61
36565571--36565633
32
2.0
32
96
0
117
49
1
33
15
1.55
36565573--36565624
16
3.2
16
68
10
52
51
1
30
15
1.54
36570476--36570583
26
4.2
26
91
0
180
36
23
7
33
1.83
36582445--36582763
46
6.7
48
74
11
221
29
18
28
23
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356