Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  343  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109815998--109816029
15
2.1
16
94
5
57
68
3
0
28
1.04
109816803--109816835
17
2.1
17
88
11
52
72
0
18
9
1.10
109830964--109831071
15
7.2
15
69
12
87
25
23
7
43
1.79
109830954--109831077
30
4.1
30
95
1
212
25
25
6
42
1.78
109833332--109833403
5
14.8
5
74
21
64
38
0
4
56
1.18
109833361--109833403
19
2.3
19
92
8
70
41
0
0
58
0.98
109833408--109833447
18
2.2
19
90
4
64
80
2
15
2
0.93
109833993--109834126
44
3.0
45
83
4
162
35
13
23
27
1.93
109838101--109838208
15
7.2
15
67
12
78
25
22
7
44
1.79
109838101--109838214
30
3.8
30
95
0
201
25
22
7
44
1.78
109844912--109844951
20
2.0
20
85
0
53
55
0
12
32
1.38
109851294--109851335
12
3.9
11
78
15
52
40
0
0
59
0.97
109858597--109859149
300
1.9
299
82
1
716
40
8
15
35
1.78
109868400--109868426
2
13.5
2
100
0
54
51
0
48
0
1.00
109869617--109869656
6
6.3
6
83
11
53
20
0
2
77
0.88
109869681--109869705
13
1.9
13
100
0
50
12
0
48
40
1.40
109869682--109869719
18
2.1
18
90
0
58
10
2
44
42
1.52
109870702--109870729
14
2.0
14
100
0
56
21
14
14
50
1.78
109871169--109871207
10
3.8
10
86
3
51
66
2
10
20
1.33
109876363--109876388
13
2.0
13
100
0
52
38
0
0
61
0.96
109877261--109877330
24
2.9
23
74
15
70
67
1
1
30
1.08
109888467--109888491
6
4.2
6
100
0
50
16
32
0
52
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109893541--109893614
25
3.0
24
80
7
96
48
0
0
51
1.00
109893621--109893645
13
1.9
13
100
0
50
44
0
0
56
0.99
109893541--109893648
49
2.2
50
80
14
125
49
0
0
50
1.00
109893609--109893678
29
2.4
29
79
9
72
45
0
1
52
1.09
109893653--109893686
18
1.9
18
88
5
52
41
0
0
58
0.98
109898704--109898767
22
2.9
22
77
13
60
62
4
0
32
1.16
109898741--109898772
16
2.1
16
94
5
57
56
6
0
37
1.25
109898890--109899369
107
4.4
108
92
6
765
51
15
1
31
1.52
109898830--109899369
220
2.4
213
89
8
789
52
15
1
31
1.51
109898830--109899441
220
2.8
220
85
12
787
51
15
1
31
1.50
109898830--109899447
327
1.9
312
85
11
856
51
15
1
32
1.50
109899809--109899854
24
1.9
24
90
0
74
26
19
43
10
1.84
109900543--109900610
20
3.2
21
71
12
59
60
1
4
33
1.26
109902480--109902521
16
2.5
17
85
14
61
19
11
4
64
1.44
109902718--109902782
30
2.1
31
82
5
78
52
6
1
40
1.36
109907115--109907173
27
2.2
27
96
3
111
37
13
18
30
1.90
109913083--109913143
9
6.4
9
71
17
52
42
0
1
55
1.09
109913162--109913205
20
2.2
20
96
4
81
31
0
6
61
1.22
109914569--109914618
25
2.0
24
92
3
82
52
2
16
30
1.55
109914620--109914667
6
8.0
6
95
0
87
33
31
0
35
1.58
109917823--109917960
67
2.0
68
90
4
217
18
34
13
34
1.90
109918158--109918186
4
7.2
4
100
0
58
24
0
0
75
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109921501--109921589
44
2.0
44
100
0
178
52
11
6
29
1.62
109921610--109921640
9
3.4
9
90
0
53
35
3
9
51
1.51
109923383--109923421
21
1.9
20
84
5
51
28
2
28
41
1.69
109924927--109925002
39
1.9
39
91
0
125
26
13
30
30
1.94
109932055--109932102
16
3.0
15
77
14
51
37
0
2
60
1.09
109938064--109938131
35
1.9
35
87
0
100
33
17
13
35
1.89
109944691--109944734
22
2.0
21
82
4
52
13
9
9
68
1.40
109946138--109946389
126
2.0
126
94
0
441
44
11
11
32
1.78
109955791--109955877
42
2.1
42
95
0
156
35
10
9
44
1.70
109960463--109960531
22
3.1
22
82
0
75
44
17
20
17
1.86
109967219--109967330
34
3.3
34
85
0
152
30
22
22
25
1.99
109970102--109970160
31
2.0
30
86
6
84
59
1
6
32
1.34
109977692--109977770
36
2.2
37
84
6
99
50
1
3
44
1.28
109979413--109979468
24
2.3
25
81
6
71
66
7
0
26
1.18
109979425--109979489
25
2.9
23
82
15
75
66
6
0
27
1.15
109979451--109979489
19
2.0
20
95
5
71
71
5
0
23
1.05
109985874--109986235
181
2.0
181
96
0
670
41
22
15
19
1.89
109986997--109987038
18
2.3
18
88
12
59
76
2
21
0
0.90
109987346--109988322
300
3.3
294
80
6
1040
36
14
9
39
1.78
109997670--109997732
31
2.1
30
85
8
83
57
11
6
25
1.57
109999226--109999250
8
3.1
8
100
0
50
24
24
24
28
2.00
110001871--110001950
39
2.0
39
82
2
97
36
7
16
40
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110002162--110002267
45
2.4
45
88
6
153
21
18
17
41
1.90
110004046--110004090
9
5.3
9
82
17
53
62
0
0
37
0.96
110004048--110004090
16
2.6
17
78
14
54
62
0
0
37
0.95
110005815--110005844
5
6.0
5
92
0
51
76
0
23
0
0.78
110006004--110006033
7
4.4
7
91
8
53
90
10
0
0
0.47
110006008--110006033
13
2.0
13
100
0
52
92
7
0
0
0.39
110007191--110007241
24
2.2
23
85
3
66
66
0
3
29
1.09
110007408--110007433
13
2.0
13
100
0
52
61
30
0
7
1.24
110008243--110008275
11
3.0
11
95
0
57
0
48
0
51
1.00
110008740--110008807
3
22.3
3
73
8
57
30
1
5
61
1.28
110008747--110008818
23
3.1
23
82
11
67
31
2
9
55
1.47
110013399--110013465
25
2.6
26
84
11
77
83
5
10
0
0.80
110015721--110015975
88
2.9
85
81
5
287
28
17
18
35
1.93
110015908--110016335
73
5.8
73
87
3
522
29
17
20
32
1.96
110015894--110016934
146
7.3
146
76
13
911
29
16
21
32
1.95
110016437--110016934
74
6.6
73
85
7
608
29
16
20
32
1.95
110016596--110016888
159
1.9
159
90
1
473
29
17
21
31
1.96
110016965--110017111
75
2.0
75
79
5
163
21
17
25
35
1.95
110017890--110017915
13
2.0
13
100
0
52
61
30
0
7
1.24
110019186--110019256
3
23.3
3
71
8
54
30
2
5
60
1.34
110019198--110019259
23
2.8
22
85
4
72
32
3
8
56
1.44
110019222--110019267
23
2.0
23
83
8
58
30
2
10
56
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110020727--110020800
7
10.1
7
70
18
53
75
0
4
20
0.96
110020727--110020773
20
2.2
23
81
14
64
78
0
6
14
0.93
110020736--110020797
15
4.4
14
78
13
65
75
0
3
20
0.94
110020756--110020796
14
2.9
14
96
3
73
73
0
0
26
0.84
110021383--110021626
129
1.9
129
99
0
479
45
15
9
29
1.77
110024561--110024597
4
8.8
4
88
11
56
75
0
2
21
0.92
110032207--110032232
6
4.3
6
100
0
52
34
0
30
34
1.58
110033866--110033916
5
10.2
5
77
8
50
41
15
1
41
1.58
110035834--110035866
16
2.1
16
88
5
50
45
15
6
33
1.70
110045074--110045113
19
2.0
20
85
4
55
40
0
10
50
1.36
110046468--110046519
16
3.2
16
83
5
68
9
25
0
65
1.23
110048743--110049662
460
2.0
460
100
0
1840
30
21
13
34
1.91
110052691--110052762
28
2.6
28
88
0
99
29
27
12
30
1.93
110057923--110057960
18
2.1
19
90
5
60
73
2
0
23
0.95
110061119--110061325
102
2.0
105
92
5
348
38
9
4
47
1.57
110079124--110079439
155
2.0
156
90
2
501
28
20
30
20
1.97
110080192--110080250
22
2.7
21
78
17
57
40
3
3
52
1.35
110082270--110082321
23
2.4
22
74
6
52
59
0
5
34
1.21
110089025--110089111
44
2.0
44
100
0
174
25
18
10
45
1.80
110095698--110095732
14
2.4
14
90
4
52
71
0
0
28
0.86
110095870--110095925
21
2.7
21
85
0
76
28
0
0
71
0.86
110096306--110096364
27
2.1
27
84
6
73
35
11
3
49
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110096551--110096598
25
1.9
25
91
8
80
27
8
8
56
1.57
110102818--110102881
32
2.0
32
96
0
119
29
21
14
34
1.93
110115536--110115579
16
2.8
16
93
6
72
36
0
2
61
1.09
110115536--110115584
16
3.1
15
88
11
71
32
2
2
63
1.17
110119031--110119067
15
2.5
16
87
12
53
21
24
10
43
1.84
110123616--110123655
21
1.9
21
84
0
53
37
2
22
37
1.68
110127376--110127554
44
4.1
44
74
11
161
30
15
25
28
1.96
110127341--110127590
132
1.9
132
88
4
380
30
16
25
27
1.96
110127534--110127640
44
2.4
44
85
4
144
28
16
28
27
1.97
110127402--110127598
88
2.2
88
75
14
192
30
16
25
27
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356