Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  325  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105062608--105062638
12
2.6
12
94
0
53
6
29
41
22
1.78
105065875--105065912
18
2.2
18
86
9
53
68
2
7
21
1.28
105067094--105067144
20
2.5
20
83
0
57
19
27
11
41
1.86
105071680--105071731
23
2.3
23
96
0
95
38
1
13
46
1.54
105072569--105072632
18
3.6
18
77
8
58
20
6
3
70
1.23
105077715--105077775
19
3.0
21
85
9
63
37
18
9
34
1.83
105077727--105077788
19
3.2
19
95
4
106
35
17
9
37
1.83
105078201--105078680
87
5.5
86
66
18
258
29
20
18
32
1.96
105078242--105078823
175
3.3
175
91
0
923
28
20
19
32
1.97
105078299--105078746
88
5.1
86
64
16
222
27
19
19
33
1.96
105078370--105078832
87
5.2
92
63
17
260
27
20
19
32
1.97
105078775--105079089
44
7.1
44
73
8
248
26
23
17
32
1.96
105078771--105079089
132
2.4
132
90
1
494
26
23
17
32
1.96
105079995--105080026
15
2.1
16
94
5
57
12
3
0
84
0.74
105085098--105085145
22
2.2
21
81
3
60
39
18
8
33
1.81
105085115--105085210
17
5.2
19
87
12
146
35
15
10
38
1.82
105085115--105085210
36
2.6
36
96
3
174
35
15
10
38
1.82
105087276--105087327
23
2.3
23
96
0
95
38
1
13
46
1.54
105087598--105087632
6
5.8
6
100
0
70
17
0
0
82
0.66
105092949--105093204
55
4.8
53
79
10
249
36
17
24
21
1.95
105092957--105093157
108
1.8
110
89
6
320
34
17
24
22
1.96
105097061--105097110
17
2.7
20
78
18
70
10
0
44
46
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105101700--105101749
17
2.7
20
78
18
70
10
0
44
46
1.37
105104909--105104956
14
3.1
14
73
21
51
54
0
2
43
1.12
105104883--105104956
32
2.3
33
86
6
100
50
0
2
47
1.15
105104918--105104972
21
2.6
21
79
2
56
54
0
1
43
1.10
105106445--105106485
22
1.9
21
85
5
55
51
17
2
29
1.58
105115364--105115408
24
1.9
23
82
13
56
71
24
2
2
1.09
105116634--105116682
24
2.0
24
100
0
98
42
24
8
24
1.81
105121992--105122118
18
7.1
18
89
0
200
32
16
23
27
1.96
105125217--105125268
5
10.4
5
75
8
52
65
0
3
30
1.10
105127267--105127976
284
2.5
287
87
2
1018
30
20
18
30
1.96
105130310--105130360
24
2.1
25
85
10
70
39
7
33
19
1.81
105131755--105131865
54
2.1
53
87
1
159
17
25
21
36
1.95
105131755--105131865
27
4.2
26
87
5
141
17
25
21
36
1.95
105138813--105138848
14
2.6
14
86
0
54
8
36
0
55
1.30
105140691--105140768
3
25.0
3
78
17
63
29
3
1
65
1.18
105140691--105140768
15
5.7
13
75
24
72
29
3
1
65
1.18
105143257--105143312
17
3.4
16
77
20
53
64
3
0
32
1.11
105145418--105145467
22
2.4
21
81
15
52
36
6
0
58
1.23
105148854--105148989
26
5.2
26
96
0
236
36
25
4
33
1.76
105153158--105153210
26
2.0
26
82
13
65
26
15
22
35
1.93
105154697--105154855
26
6.3
26
87
5
218
36
23
5
34
1.78
105154697--105154855
52
3.1
51
88
6
243
36
23
5
34
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105154706--105154852
48
3.0
49
91
4
233
36
23
5
34
1.78
105156342--105156521
22
8.1
21
64
20
73
32
3
2
61
1.27
105156349--105156507
35
4.4
36
68
18
100
33
3
2
61
1.25
105156349--105156497
15
10.0
15
71
18
82
33
2
2
61
1.24
105156383--105156453
20
3.4
21
75
19
67
35
1
1
61
1.13
105156353--105156497
7
21.4
7
68
14
81
33
2
2
61
1.25
105160451--105161276
421
2.0
421
96
0
1526
37
14
20
27
1.92
105169033--105169979
289
3.3
289
93
0
1606
31
17
20
30
1.95
105169768--105169924
83
1.9
83
86
2
226
33
15
18
32
1.93
105170806--105170859
27
2.0
25
82
13
63
55
12
9
22
1.65
105171660--105171837
22
8.1
21
66
19
71
33
3
2
60
1.27
105171640--105171758
41
2.9
41
81
10
111
31
3
3
61
1.29
105171701--105171819
61
2.0
61
82
12
147
34
2
3
59
1.27
105171671--105171813
7
21.4
7
69
17
81
33
2
2
60
1.25
105171912--105171977
23
2.9
22
80
8
71
31
4
0
63
1.14
105171949--105171975
14
1.9
14
100
0
54
37
3
0
59
1.15
105171956--105172007
17
3.1
17
77
22
65
32
3
1
61
1.25
105171940--105172007
34
2.0
33
88
2
100
33
2
1
61
1.20
105171938--105171993
14
4.1
13
75
24
53
35
1
1
60
1.17
105174694--105174746
26
2.0
26
82
7
63
26
15
20
37
1.92
105176225--105176289
32
2.0
32
100
0
130
38
24
6
30
1.80
105180142--105180196
9
5.7
10
74
21
55
47
0
1
50
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105186944--105186980
15
2.5
16
87
12
53
21
24
10
43
1.84
105186944--105186993
15
3.5
15
79
15
52
22
22
12
44
1.85
105194600--105195153
175
3.2
175
91
0
912
35
19
18
26
1.95
105194615--105195077
88
5.3
88
67
14
319
34
20
18
26
1.95
105194720--105195198
87
5.5
87
67
14
277
34
17
18
29
1.95
105196527--105196583
19
2.8
19
76
19
53
26
5
1
66
1.22
105196524--105196565
21
2.0
22
86
13
61
23
4
0
71
1.05
105196532--105196572
22
1.9
21
85
5
55
26
7
0
65
1.18
105198809--105198867
30
1.9
32
86
6
86
16
23
3
55
1.56
105200950--105200998
17
2.8
17
79
11
55
34
4
2
59
1.28
105201011--105201066
26
2.2
26
83
6
69
33
0
5
60
1.19
105202527--105202756
78
2.9
78
85
1
318
32
22
14
30
1.94
105202721--105202858
40
3.5
40
84
0
177
35
21
13
30
1.91
105204108--105204177
30
2.3
31
80
7
81
31
21
2
44
1.67
105204862--105204887
13
2.0
13
100
0
52
30
7
7
53
1.57
105206441--105206532
39
2.4
39
85
5
125
36
21
23
17
1.94
105206593--105206726
41
3.3
41
82
2
135
30
23
19
26
1.98
105206999--105207050
14
3.7
14
84
0
68
23
0
26
50
1.50
105207031--105207127
22
4.3
23
70
13
67
26
0
26
46
1.53
105206999--105207052
7
7.7
7
76
0
54
22
0
27
50
1.50
105207218--105207296
22
3.6
22
76
5
61
27
5
37
29
1.78
105207230--105207269
15
2.7
15
85
11
55
25
7
42
25
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105207222--105207276
7
7.6
7
76
15
58
27
5
41
25
1.77
105207483--105207517
17
2.0
17
88
5
52
34
0
0
65
0.93
105208058--105208090
10
3.5
10
84
16
52
9
39
9
42
1.68
105212791--105212870
31
2.5
33
78
11
87
46
6
2
45
1.42
105217183--105217221
20
2.0
20
84
0
51
43
5
33
17
1.72
105221122--105221160
17
2.3
17
86
8
53
79
7
0
12
0.93
105221123--105221169
23
2.0
23
83
0
58
78
8
0
12
0.95
105221385--105221416
10
3.1
11
86
13
50
53
18
18
9
1.71
105222450--105222501
22
2.4
21
83
6
59
23
3
5
67
1.29
105222871--105222899
15
1.9
15
100
0
58
13
0
0
86
0.58
105222893--105222949
28
2.1
28
86
3
80
31
7
5
56
1.49
105224717--105224807
45
2.0
45
100
0
182
32
18
17
30
1.94
105229170--105229240
3
24.0
3
94
2
126
33
1
0
64
1.02
105230697--105230740
17
2.5
18
81
7
54
43
9
15
31
1.79
105232945--105233002
10
5.8
10
85
0
62
24
10
0
65
1.23
105232945--105233002
30
1.9
30
85
0
80
24
10
0
65
1.23
105237230--105237279
13
3.9
13
84
2
66
56
8
2
34
1.40
105241353--105241509
26
5.9
26
70
13
106
57
4
5
31
1.42
105242177--105242263
26
3.4
25
75
12
70
70
1
6
21
1.18
105243636--105243660
13
1.9
13
100
0
50
0
12
40
48
1.40
105244185--105244256
36
2.0
36
100
0
144
30
16
13
38
1.88
105245455--105245479
3
8.3
3
100
0
50
68
0
0
32
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105246183--105246225
19
2.2
20
84
12
54
65
4
0
30
1.13
105247320--105247447
66
1.9
67
88
3
195
32
20
13
33
1.91
105249044--105249074
6
5.2
6
100
0
62
67
32
0
0
0.91
105250560--105250602
22
2.0
22
95
0
77
16
30
9
44
1.79
105252108--105252138
5
6.2
5
92
0
53
35
19
3
41
1.67
105252106--105252136
15
2.1
15
100
0
62
32
19
6
41
1.77
105258577--105258748
46
3.7
46
77
14
192
29
28
20
21
1.98
105258582--105258751
92
1.8
93
92
1
288
28
29
20
21
1.98
105259168--105259227
30
2.0
30
86
0
84
30
25
6
38
1.81
105271241--105271275
18
1.9
18
94
0
61
42
0
0
57
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356