Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  349  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111665237--111665287
22
2.3
21
77
12
50
64
3
1
29
1.22
111665484--111665546
33
1.9
32
84
12
83
57
9
1
31
1.40
111670065--111670106
22
1.9
22
85
9
59
23
7
0
69
1.13
111671154--111671197
17
2.7
16
82
13
54
45
0
0
54
0.99
111671153--111671193
16
2.5
17
76
11
50
41
0
0
58
0.98
111672818--111672851
18
1.9
18
88
5
52
55
2
11
29
1.50
111673569--111673618
10
5.0
10
85
9
75
68
2
8
22
1.26
111673569--111673628
20
3.0
19
83
9
75
66
3
8
21
1.33
111677253--111677317
33
2.0
33
84
0
85
29
30
10
29
1.91
111686792--111686856
32
2.0
33
82
8
80
36
3
13
46
1.60
111690101--111690143
3
14.3
3
100
0
86
32
0
0
67
0.91
111693263--111693303
18
2.4
17
83
4
55
31
0
4
63
1.15
111693271--111693309
18
2.2
18
90
0
60
33
0
5
61
1.18
111693265--111693311
16
2.8
18
84
9
64
34
0
4
61
1.15
111694350--111694388
13
3.0
13
92
0
60
76
0
23
0
0.78
111711268--111711332
27
2.4
28
94
5
123
36
7
0
55
1.29
111721573--111721627
28
2.0
28
100
0
110
20
7
29
43
1.78
111725328--111725362
16
2.2
16
100
0
70
42
25
0
31
1.55
111732552--111732661
55
1.9
59
85
9
156
57
6
2
33
1.38
111739213--111739260
25
1.9
25
83
8
62
56
2
6
35
1.36
111740823--111741045
39
5.6
39
86
7
304
38
24
25
12
1.90
111744113--111744157
23
2.0
23
82
8
56
15
0
8
75
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111744476--111744614
68
2.0
68
98
0
269
28
7
20
44
1.77
111749156--111749223
3
22.7
3
85
5
93
30
4
1
63
1.23
111749358--111749437
36
2.2
36
80
8
92
36
8
2
52
1.46
111754243--111754276
16
2.1
17
88
5
52
79
5
8
5
1.05
111756498--111756636
44
3.2
44
66
8
120
29
25
20
23
1.99
111756530--111756667
43
3.2
43
67
8
134
28
21
23
25
1.99
111756494--111756790
88
3.4
88
89
2
413
30
22
21
24
1.99
111756542--111756680
44
3.2
44
67
8
138
26
21
23
28
1.99
111756494--111756836
176
1.9
176
80
5
399
30
22
21
24
1.99
111757024--111757173
44
3.4
44
71
9
135
30
18
22
28
1.97
111758581--111758642
3
20.7
3
83
6
81
30
4
1
62
1.25
111758777--111758856
36
2.2
36
80
8
92
36
8
2
52
1.46
111761938--111761991
6
9.0
6
97
0
99
35
50
0
14
1.44
111765286--111765353
3
22.7
3
100
0
136
66
0
33
0
0.92
111765352--111765378
3
9.0
3
100
0
54
33
0
66
0
0.92
111765828--111765873
18
2.4
21
79
13
55
71
6
15
6
1.27
111765824--111765869
21
2.1
22
84
11
60
71
8
13
6
1.29
111769280--111769330
19
2.7
19
88
11
70
58
5
0
35
1.22
111770481--111770532
25
2.0
27
88
7
81
0
28
0
71
0.87
111777312--111777524
86
2.4
89
82
9
251
29
14
21
35
1.92
111777313--111777631
86
3.7
87
78
10
227
29
14
20
34
1.93
111777721--111777837
58
2.0
59
91
1
191
24
18
25
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111777779--111778474
72
9.4
72
89
3
935
30
17
21
31
1.96
111783875--111783908
14
2.4
14
90
5
50
55
2
2
38
1.30
111784951--111784990
14
3.0
14
85
10
57
20
5
0
75
0.99
111784953--111785001
4
11.8
4
82
8
53
26
2
0
71
0.97
111813487--111813795
44
6.7
46
70
16
154
30
19
22
27
1.98
111813530--111813928
44
8.8
43
73
12
257
31
17
22
28
1.97
111813487--111813697
88
2.4
90
80
6
225
29
18
22
29
1.97
111813560--111813840
144
2.0
142
80
4
323
32
18
21
27
1.97
111813487--111813988
232
2.2
232
96
0
925
31
18
21
27
1.97
111815652--111815677
3
8.7
3
100
0
52
34
0
0
65
0.93
111822786--111822837
24
2.2
24
89
0
77
55
9
1
32
1.43
111824757--111824808
24
2.2
24
89
0
77
55
9
1
32
1.43
111830372--111830412
21
2.0
21
90
0
64
29
21
29
19
1.98
111840792--111840856
31
2.1
31
100
0
130
53
9
15
21
1.69
111844347--111844454
44
2.4
44
87
3
144
29
23
13
33
1.93
111847118--111847152
12
2.9
12
91
0
52
31
11
17
40
1.85
111852258--111852326
22
3.1
22
71
19
63
68
0
1
30
0.99
111852259--111852291
16
2.1
16
94
5
59
69
0
0
30
0.88
111865696--111865744
23
2.1
24
85
11
66
24
8
12
55
1.64
111867221--111867260
19
2.0
22
85
14
59
32
47
2
17
1.61
111867322--111867487
27
6.2
26
86
7
215
36
22
24
16
1.95
111867322--111867487
54
3.1
54
93
1
271
36
22
24
16
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111869106--111869215
26
4.2
26
95
0
175
36
23
5
34
1.78
111869769--111869868
37
2.6
37
83
7
112
13
7
3
77
1.09
111869839--111869886
14
3.4
14
77
11
53
16
2
4
77
1.03
111869889--111869956
23
3.2
21
82
10
75
47
1
4
47
1.31
111869882--111869958
22
3.5
20
74
13
64
46
1
3
48
1.28
111869902--111869967
23
3.0
22
76
21
66
43
1
1
53
1.19
111869948--111869984
18
2.1
18
89
0
56
45
0
0
54
1.00
111869889--111869956
22
3.2
20
78
17
66
47
1
4
47
1.31
111870166--111870192
14
1.9
14
100
0
54
33
0
0
66
0.92
111870176--111870229
11
5.1
11
76
13
51
38
1
1
57
1.20
111870178--111870235
10
5.6
10
75
6
53
37
1
1
58
1.18
111870178--111870236
31
1.9
32
83
13
79
38
1
1
57
1.19
111870334--111870383
22
2.3
23
89
6
77
62
0
0
38
0.96
111870332--111870392
20
3.0
21
83
9
72
60
0
0
39
0.97
111870355--111870450
34
2.9
34
83
10
126
60
0
1
38
1.04
111870334--111870393
22
2.8
22
82
7
61
63
0
0
36
0.95
111870491--111870613
13
9.6
13
69
21
73
78
1
4
16
0.99
111870491--111870613
9
14.0
8
74
16
86
78
1
4
16
0.99
111870511--111870615
17
6.0
17
71
22
67
78
0
4
16
0.98
111870826--111870850
13
1.9
13
100
0
50
60
0
0
40
0.97
111870768--111870862
20
4.8
19
71
17
70
55
0
1
43
1.06
111870830--111871183
36
10.0
34
77
14
303
53
1
1
42
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111870830--111871183
71
5.0
70
73
17
304
53
1
1
42
1.22
111871011--111871065
22
2.5
23
77
17
62
54
0
1
43
1.10
111870993--111871050
29
2.1
26
84
9
71
50
0
1
48
1.11
111871029--111871077
22
2.3
21
85
3
62
61
2
2
34
1.19
111870741--111871178
217
2.0
214
92
3
720
52
1
1
43
1.22
111871079--111871227
59
2.6
57
75
12
144
55
3
0
40
1.21
111871115--111871158
22
2.1
22
87
8
65
59
2
0
38
1.10
111871145--111871227
23
3.6
23
75
16
82
56
3
0
39
1.17
111871238--111871279
14
3.1
13
80
19
50
78
2
2
16
0.96
111876854--111876887
17
2.0
17
94
0
59
50
0
0
50
1.00
111879110--111879188
33
2.3
36
80
12
94
45
5
1
48
1.32
111883552--111883580
3
9.7
3
100
0
58
31
0
0
68
0.89
111883581--111883839
73
3.5
73
98
0
500
27
6
25
40
1.79
111888986--111889244
73
3.5
73
98
0
500
40
25
6
27
1.79
111889245--111889270
3
8.7
3
100
0
52
69
0
0
30
0.89
111892589--111892684
45
2.1
45
92
1
156
37
20
7
34
1.81
111895670--111895795
63
2.0
63
87
4
184
33
12
15
38
1.85
111909912--111909945
18
1.9
18
88
5
52
20
2
2
73
1.09
111914917--111914963
3
15.7
3
100
0
94
31
0
0
68
0.90
111919292--111919329
3
12.7
3
100
0
76
31
0
0
68
0.90
111919330--111919515
73
2.5
73
99
0
363
27
6
24
40
1.80
111921223--111921448
113
2.0
113
96
0
416
31
12
20
35
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111931318--111931355
20
2.0
20
89
5
60
36
0
0
63
0.95
111944223--111944286
31
2.0
32
90
3
103
51
6
6
35
1.52
111944275--111944365
24
3.8
22
73
18
58
54
5
9
29
1.55
111944432--111944468
16
2.2
17
90
4
58
51
24
0
24
1.49
111944458--111944582
44
2.8
45
81
9
141
60
3
1
35
1.23
111944468--111944582
21
5.2
21
79
14
90
60
2
1
34
1.20
111944468--111944638
67
2.7
65
80
14
160
59
2
2
35
1.28
111944657--111944730
35
2.1
35
80
9
80
63
2
5
28
1.30
111944814--111944977
3
54.7
3
67
18
74
59
2
6
31
1.35
111944841--111944917
36
2.2
35
81
9
86
58
1
6
33
1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356