genome.fa.s11.2.7.7.80.10.50.1000.350.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  350  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111945314--111945387	36	2.0	36	84	10	96	27	24	25	22	2.00
111947188--111947505	158	2.0	158	97	0	600	32	12	24	30	1.92
111956228--111956493	47	5.7	47	92	0	388	28	28	7	36	1.83
111964581--111964610	4	7.5	4	100	0	60	50	26	0	23	1.50
111969640--111969680	21	1.9	22	85	5	57	19	7	0	73	1.07
111971259--111971310	26	2.0	25	85	3	68	32	0	9	57	1.31
111978122--111978162	21	2.0	20	85	4	55	34	2	0	63	1.08
111978151--111978194	18	2.3	19	84	7	54	38	9	2	50	1.47
111979340--111979480	20	7.0	20	67	13	92	57	6	16	19	1.60
111979344--111979503	40	4.0	40	71	13	112	57	7	16	18	1.62
111979868--111979905	19	2.0	19	89	0	58	63	5	15	15	1.48
111979841--111979914	20	3.7	20	76	5	69	59	6	17	16	1.57
111981682--111981761	31	2.7	28	83	14	90	31	11	15	42	1.81
111993819--111993905	21	4.0	23	80	10	92	14	21	25	37	1.92
111997223--111997272	3	17.3	3	75	8	50	60	4	2	34	1.27
111998775--111998924	45	3.2	45	68	18	133	27	22	21	29	1.99
111998975--111999531	44	12.7	43	76	9	500	30	24	16	28	1.96
111998993--111999531	132	4.1	132	94	0	927	30	25	15	28	1.96
112000370--112000402	1	33.0	1	93	0	57	3	0	0	96	0.20
112011523--112011549	3	9.0	3	100	0	54	66	0	0	33	0.92
112011673--112011722	3	17.3	3	75	8	50	60	4	2	34	1.27
112017810--112017862	25	2.2	23	83	12	63	58	1	11	28	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112021705--112021737	17	1.9	17	100	0	66	24	6	9	60	1.49
112026486--112026619	60	2.2	59	81	1	142	36	5	12	45	1.65
112042366--112042549	62	3.0	62	95	0	323	41	20	4	33	1.74
112043780--112043835	23	2.5	22	80	11	60	78	14	3	3	1.02
112043781--112043835	12	4.9	11	80	12	51	80	12	3	3	0.98
112045196--112046118	132	7.0	132	92	0	1445	27	16	26	29	1.96
112046003--112046533	46	11.8	46	67	8	250	27	19	23	29	1.98
112046081--112046489	88	4.6	91	65	11	220	26	20	23	29	1.99
112046038--112046613	134	4.3	134	95	1	976	27	19	23	30	1.98
112046009--112046621	46	13.7	46	66	11	234	27	19	22	30	1.98
112046650--112047161	130	3.9	130	89	1	742	28	20	24	26	1.99
112046840--112047149	43	7.2	43	68	5	167	28	20	25	26	1.99
112046653--112047161	259	2.0	259	88	1	752	29	20	24	25	1.99
112048239--112048273	11	3.2	11	88	11	54	0	54	0	45	0.99
112048758--112048791	6	5.5	6	86	6	50	32	2	11	52	1.53
112048758--112048806	22	2.1	22	85	11	62	32	2	10	55	1.45
112049200--112049259	20	3.0	18	78	21	66	36	5	1	56	1.31
112049138--112049269	64	2.1	64	81	11	155	37	4	2	55	1.33
112049621--112049715	38	2.5	37	78	13	97	36	12	1	49	1.48
112054514--112054574	31	2.0	31	83	6	79	32	8	19	39	1.81
112056349--112056411	30	2.1	30	93	0	108	57	14	3	25	1.52
112073908--112073947	18	2.2	18	86	0	53	30	2	15	52	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112074205--112074229	13	1.9	13	100	0	50	64	0	4	32	1.12
112076001--112076061	19	3.2	20	76	19	69	29	0	1	68	0.99
112076001--112076093	38	2.4	38	80	15	95	26	0	6	66	1.15
112076431--112076462	11	3.1	11	86	13	50	53	0	0	46	1.00
112081852--112081878	4	6.8	4	100	0	54	51	22	0	25	1.48
112082066--112082101	2	18.0	2	100	0	72	50	0	50	0	1.00
112084342--112084403	33	1.9	31	84	12	81	20	9	6	62	1.47
112084812--112085436	4	160.2	4	76	5	368	36	0	61	0	1.06
112084812--112085436	6	106.8	6	77	5	368	36	0	61	0	1.06
112085345--112085443	10	10.1	10	82	12	50	40	0	59	0	0.97
112088610--112088647	20	1.9	20	100	0	76	28	10	0	60	1.30
112089239--112089276	12	2.9	13	84	7	51	60	0	0	39	0.97
112092934--112092967	16	2.1	16	89	10	52	88	0	8	2	0.62
112101058--112101108	24	2.1	25	92	3	86	41	17	15	25	1.89
112109452--112109480	8	3.6	8	100	0	58	37	0	0	62	0.96
112109503--112109543	5	8.4	5	94	5	75	41	0	0	58	0.98
112109551--112109590	21	2.0	20	90	5	62	65	7	20	7	1.43
112111279--112111321	18	2.4	18	84	0	50	13	4	27	53	1.60
112114300--112114327	13	2.2	13	100	0	56	53	14	0	32	1.41
112117936--112118309	35	10.7	34	90	3	435	30	25	14	29	1.94
112117938--112118309	105	3.5	105	89	1	532	30	25	13	30	1.94
112118428--112118456	14	2.0	15	93	6	51	55	10	6	27	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112121598--112121638	20	2.0	20	95	0	73	48	4	12	34	1.62
112122966--112123001	16	2.2	17	90	5	56	36	2	22	38	1.69
112123850--112123874	5	5.0	5	100	0	50	20	0	0	80	0.72
112124713--112124892	39	4.6	39	84	1	227	27	24	18	29	1.98
112124715--112124895	78	2.3	79	87	2	258	28	24	17	29	1.97
112136017--112136062	13	3.5	13	79	5	56	54	13	0	32	1.39
112141341--112141378	12	3.0	13	88	3	51	50	0	0	50	1.00
112142008--112142042	17	2.0	18	88	5	54	62	2	2	31	1.24
112142337--112142380	20	2.2	20	87	0	61	43	0	9	47	1.35
112144484--112144511	7	4.0	7	100	0	56	85	0	14	0	0.59
112144903--112144932	6	5.0	6	95	0	51	16	0	70	13	1.18
112146161--112146283	53	2.3	53	90	1	203	35	18	3	42	1.67
112149830--112149870	22	1.9	21	85	14	57	31	12	17	39	1.86
112154486--112154520	6	5.8	6	93	0	61	14	65	0	20	1.26
112157578--112157620	22	2.0	22	90	0	68	46	16	2	34	1.60
112161310--112161357	22	2.2	22	88	0	69	47	16	2	33	1.58
112177254--112177278	9	2.8	9	100	0	50	24	44	0	32	1.54
112184871--112184936	30	2.2	30	83	5	80	51	6	0	42	1.26
112185771--112186110	116	3.0	111	88	8	490	37	16	13	32	1.87
112186248--112186573	112	2.9	112	89	4	489	32	14	16	36	1.89
112188556--112188600	22	2.0	22	83	8	56	51	2	0	46	1.13
112188989--112189062	38	1.9	38	86	0	103	37	6	12	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112192905--112192949	23	1.9	23	86	13	65	35	0	0	64	0.94
112201073--112201113	21	2.0	21	90	0	64	19	29	21	29	1.98
112209702--112209726	9	2.8	9	100	0	50	20	24	24	32	1.98
112210013--112210144	66	2.0	65	86	1	183	32	17	27	22	1.96
112212439--112212483	4	11.0	4	80	4	54	26	2	2	68	1.12
112221377--112221407	14	2.2	14	94	0	53	19	3	12	64	1.41
112235121--112235166	19	2.5	18	82	3	56	63	0	8	28	1.24
112235111--112235164	28	1.9	28	84	0	72	62	0	11	25	1.28
112235130--112235165	18	1.9	19	88	5	56	63	0	11	25	1.27
112235638--112235687	24	2.1	25	82	10	61	56	6	2	36	1.36
112237113--112237140	14	2.0	14	100	0	56	50	14	0	35	1.43
112251719--112251753	18	1.9	18	88	0	52	62	0	22	14	1.31
112253811--112253849	21	1.9	21	89	5	62	79	10	5	5	1.04
112253811--112253848	20	1.9	20	89	10	60	78	10	5	5	1.06
112255330--112255364	18	1.9	18	88	0	52	62	0	22	14	1.31
112268316--112268348	11	3.1	11	95	4	59	69	0	9	21	1.15
112269900--112269964	32	2.0	32	100	0	130	30	6	24	38	1.80
112271448--112271500	26	2.0	26	82	7	63	37	20	15	26	1.92
112273106--112273136	12	2.6	12	100	0	62	9	25	51	12	1.70
112277973--112278033	32	1.9	32	100	0	122	31	4	24	39	1.77
112279520--112279572	26	2.0	26	82	7	63	37	20	15	26	1.92
112280165--112280197	11	3.1	11	95	4	59	69	0	9	21	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112281744--112281808	32	2.0	32	100	0	130	30	6	24	38	1.80
112283293--112283345	26	2.0	26	85	7	72	37	22	15	24	1.92
112286188--112286358	79	2.2	79	83	6	204	27	19	26	26	1.99
112286141--112286325	40	4.7	40	82	6	207	24	22	27	25	2.00
112288655--112288704	22	2.1	23	82	10	57	48	4	0	48	1.20
112288899--112288964	21	3.2	20	75	12	71	19	1	34	43	1.60
112289478--112289530	26	2.0	27	88	3	81	49	1	7	41	1.42
112291396--112291552	9	16.8	9	67	24	60	61	1	4	32	1.27
112291406--112291462	19	2.9	19	75	14	55	61	0	1	36	1.07
112291426--112291554	56	2.3	58	76	11	142	60	2	3	33	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356