Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  146  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47023269--47023412
6
24.0
6
94
0
225
33
3
17
45
1.65
47027203--47027255
24
2.2
25
89
6
90
64
1
3
30
1.22
47028419--47028470
27
2.0
25
88
7
77
21
3
7
67
1.32
47032681--47032710
12
2.5
12
88
0
51
56
0
26
16
1.40
47035404--47035518
44
2.6
44
83
2
140
35
14
22
26
1.93
47035404--47035537
46
3.0
45
80
4
135
35
14
23
26
1.94
47042781--47042895
44
2.6
44
85
2
149
35
13
22
27
1.92
47042781--47042914
46
3.0
45
82
4
153
35
14
23
26
1.93
47046078--47046196
58
2.1
58
96
0
220
42
20
10
27
1.84
47049932--47050062
59
2.2
59
84
8
160
51
0
2
45
1.19
47050066--47050158
32
2.9
31
81
13
116
44
0
2
53
1.12
47050139--47050176
10
3.9
10
89
3
51
52
2
0
44
1.14
47060191--47060231
21
2.0
21
90
0
64
19
29
21
29
1.98
47063625--47063658
16
2.1
16
88
0
50
50
14
17
17
1.79
47066453--47066493
21
2.0
21
90
0
64
29
21
29
19
1.98
47071137--47071195
11
5.7
11
76
17
56
71
1
0
27
0.96
47071132--47071194
10
6.6
10
77
18
64
71
1
0
26
0.95
47071137--47071184
21
2.3
21
92
3
80
72
2
0
25
0.95
47071132--47071194
19
3.3
18
83
16
83
71
1
0
26
0.95
47071133--47071195
21
3.2
20
85
12
78
73
1
0
25
0.93
47071119--47071194
30
2.7
26
75
16
71
67
1
0
31
0.99
47077535--47077614
31
2.6
30
80
5
81
46
11
7
35
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47077706--47077771
30
2.2
30
83
5
80
43
3
12
40
1.57
47078417--47078449
16
2.0
17
88
5
50
63
0
0
36
0.95
47078692--47078749
30
1.9
31
89
3
91
36
6
3
53
1.45
47079346--47079390
22
2.0
22
82
0
54
64
0
0
35
0.94
47081330--47081381
11
4.9
11
83
9
72
28
28
0
42
1.56
47081324--47081381
20
2.7
21
86
10
82
31
27
0
41
1.56
47083177--47083219
18
2.4
18
92
0
68
16
27
11
44
1.82
47083604--47084102
116
4.3
116
95
0
872
40
3
8
47
1.51
47087121--47087648
126
4.2
126
91
1
853
26
21
18
33
1.96
47087758--47087932
96
1.8
97
86
6
257
41
13
1
43
1.54
47094695--47094723
12
2.5
12
94
5
51
55
10
0
34
1.34
47098727--47098792
33
2.0
33
96
0
123
37
6
28
27
1.80
47099496--47099546
9
5.3
9
82
13
66
31
11
1
54
1.47
47099491--47099568
30
2.7
30
92
4
124
32
8
2
56
1.44
47099552--47099638
24
3.4
25
82
10
88
28
9
5
56
1.54
47099956--47100252
125
2.4
124
84
3
364
28
15
18
37
1.91
47100027--47100302
125
2.2
122
80
5
284
30
14
17
38
1.89
47111395--47111945
84
6.6
84
89
1
764
37
22
22
17
1.94
47111530--47111663
40
3.2
43
65
16
125
36
21
23
18
1.95
47111406--47111627
40
5.3
40
63
14
108
37
21
21
19
1.94
47111395--47111945
251
2.2
252
87
1
800
37
22
22
17
1.94
47111741--47111886
40
3.5
40
68
18
120
36
23
22
17
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47113515--47113638
12
10.1
12
69
17
69
29
8
4
57
1.48
47113523--47113576
28
1.9
28
84
0
72
29
11
7
51
1.64
47114058--47114348
125
2.3
123
81
3
323
27
16
18
37
1.92
47115037--47115119
30
2.8
30
75
5
78
61
6
8
24
1.47
47120680--47120729
17
2.8
17
77
17
57
54
4
8
34
1.49
47120680--47120753
36
2.1
35
82
5
87
52
6
5
35
1.51
47120882--47120944
26
2.4
25
82
7
72
61
4
1
31
1.26
47120963--47121048
23
3.8
23
67
21
56
61
5
2
30
1.32
47120881--47121042
72
2.2
73
77
11
179
59
6
3
31
1.38
47121115--47121169
28
1.9
28
85
10
76
58
1
12
27
1.45
47121253--47121279
12
2.2
12
100
0
54
66
0
0
33
0.92
47121654--47121702
12
4.1
12
78
0
53
61
2
4
32
1.26
47122825--47122870
18
2.6
18
80
16
51
19
0
32
47
1.50
47123219--47123258
6
6.8
6
88
11
57
67
0
0
32
0.91
47123219--47123258
17
2.3
18
91
4
64
67
0
0
32
0.91
47123406--47123455
19
2.7
18
93
3
82
68
10
16
6
1.38
47123616--47123650
14
2.5
14
90
0
61
65
0
31
2
1.07
47123629--47123667
18
2.1
19
86
13
55
69
0
25
5
1.09
47124247--47124982
138
5.4
138
92
3
1179
56
7
8
27
1.57
47126979--47127123
72
2.0
72
83
0
182
25
25
13
35
1.93
47127805--47127829
11
2.3
11
100
0
50
28
0
28
44
1.55
47128749--47128783
18
1.9
18
100
0
70
28
22
20
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47128736--47128795
18
2.8
24
66
28
69
25
28
15
31
1.95
47129683--47129715
16
2.1
16
88
11
50
0
24
0
75
0.80
47130642--47130667
11
2.4
11
100
0
52
34
0
0
65
0.93
47133036--47133100
28
2.3
26
76
23
62
64
4
9
21
1.41
47133180--47133255
26
2.8
26
80
7
73
50
2
18
28
1.61
47133239--47133305
26
2.5
28
82
4
84
56
0
7
35
1.27
47133209--47133305
28
3.6
27
76
8
90
54
1
12
31
1.44
47136046--47136212
41
4.1
40
91
4
237
35
20
19
25
1.96
47137919--47137958
12
3.3
12
100
0
80
22
35
42
0
1.54
47138447--47138510
3
21.3
3
86
0
92
31
3
1
64
1.19
47138641--47138723
36
2.2
38
79
14
93
34
8
2
54
1.44
47139842--47139877
18
2.0
18
88
0
54
50
16
5
27
1.68
47141021--47141064
19
2.3
20
84
7
56
27
22
11
38
1.88
47143610--47143655
24
1.9
24
81
0
56
78
6
6
8
1.10
47145443--47145579
42
3.2
43
63
20
97
29
26
21
22
1.99
47145351--47145568
86
2.5
85
87
5
296
30
24
22
22
1.99
47145585--47146275
44
16.1
43
70
13
396
31
19
21
27
1.97
47145611--47146154
170
3.2
170
97
0
1025
32
19
20
27
1.97
47146126--47146287
87
1.9
87
84
2
218
30
20
23
25
1.99
47145950--47146391
218
2.0
213
80
7
473
31
19
22
26
1.98
47146468--47146656
86
2.2
86
91
0
306
32
21
22
23
1.98
47148008--47148047
12
3.3
12
100
0
80
22
35
42
0
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47148535--47148589
3
18.3
3
84
0
74
30
3
1
63
1.22
47148720--47148802
36
2.3
37
80
14
93
34
9
2
53
1.47
47149924--47149959
18
2.0
18
88
0
54
50
16
5
27
1.68
47151581--47151610
14
2.2
13
94
5
51
50
0
13
36
1.42
47152656--47152705
23
2.2
23
96
0
91
34
14
16
36
1.88
47153072--47153161
9
9.3
9
75
13
81
45
22
1
31
1.60
47153093--47153145
27
2.0
27
96
0
97
45
22
1
30
1.63
47156404--47156448
21
2.1
21
87
0
63
24
17
57
0
1.40
47157809--47157846
20
1.9
20
84
10
51
28
5
5
60
1.40
47157977--47158014
13
2.8
14
88
8
60
26
7
23
42
1.81
47159763--47159814
28
1.9
26
88
7
77
7
7
5
78
1.08
47159772--47159814
21
2.0
22
86
4
61
6
9
6
76
1.15
47160692--47160731
21
1.9
21
85
10
55
20
7
5
67
1.34
47160697--47160743
18
2.7
18
75
15
53
25
6
2
65
1.27
47162937--47163039
21
4.8
21
74
14
93
59
1
4
33
1.30
47163001--47163039
20
2.0
20
90
10
62
61
2
0
35
1.10
47162933--47163051
23
5.2
22
71
19
84
57
1
5
34
1.33
47183318--47183420
21
4.8
21
77
14
111
58
0
4
35
1.26
47183316--47183436
23
5.4
23
73
18
105
57
0
5
36
1.29
47185851--47185900
16
3.0
16
82
5
55
34
0
2
64
1.05
47187647--47187679
7
4.9
7
92
7
59
72
0
0
27
0.85
47187647--47187684
13
2.8
13
92
4
58
71
0
0
28
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47188389--47188425
18
2.1
18
89
0
56
5
37
0
56
1.22
47192163--47192246
26
3.2
26
93
0
141
38
25
4
32
1.77
47193171--47193234
30
2.2
30
91
2
103
28
23
14
34
1.93
47206629--47206692
31
2.1
31
93
0
110
32
23
7
35
1.84
47208300--47208409
31
3.4
31
68
14
94
14
30
5
50
1.65
47208289--47208447
68
2.3
70
91
5
259
13
34
3
48
1.60
47213722--47213808
44
2.0
43
88
2
129
31
11
26
31
1.91
47214194--47214327
57
2.4
55
83
8
164
43
1
3
51
1.28
47223780--47223897
40
3.0
40
97
0
218
28
29
19
22
1.98
47230837--47230935
20
5.0
20
77
3
94
15
25
19
40
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356