Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  340  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108811130--108811210
21
3.5
21
70
20
72
44
37
2
16
1.61
108811107--108811229
49
2.5
48
87
8
169
44
37
2
15
1.60
108811180--108811258
41
1.9
41
84
0
104
39
37
3
18
1.69
108811651--108811714
15
4.4
15
78
5
51
29
0
23
46
1.52
108811651--108811712
22
2.9
22
83
11
67
29
0
22
48
1.51
108814938--108814980
6
7.2
6
94
0
77
0
46
16
37
1.47
108817466--108817606
72
2.0
72
87
2
203
39
19
12
28
1.88
108826554--108826618
20
3.1
20
86
13
87
26
27
4
41
1.75
108828524--108828564
21
2.0
21
90
0
64
19
29
21
29
1.98
108842599--108842639
21
2.0
21
90
0
64
29
21
29
19
1.98
108844543--108844576
16
2.1
16
88
0
50
50
14
17
17
1.79
108854310--108854359
24
2.1
24
100
0
100
52
24
4
20
1.63
108875827--108875878
10
5.1
10
88
2
68
21
5
1
71
1.17
108876784--108876816
12
2.8
12
100
0
66
24
9
0
66
1.20
108885677--108885744
5
13.0
5
77
14
66
17
2
1
77
0.96
108885678--108885744
15
4.6
14
80
17
75
17
2
1
77
0.97
108885694--108885752
28
2.1
28
81
6
66
23
3
0
72
0.99
108887314--108887353
20
2.0
20
90
9
64
20
7
2
70
1.24
108893034--108893083
26
1.9
26
95
0
91
34
20
0
46
1.51
108898594--108898744
69
2.2
69
81
0
167
39
26
19
15
1.91
108898770--108898967
69
2.9
68
84
6
256
37
21
22
18
1.94
108898845--108899092
123
2.0
123
84
1
318
35
21
22
19
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108898776--108899133
192
1.9
192
86
1
520
37
21
22
18
1.95
108899014--108900156
129
8.9
128
84
7
1081
39
20
22
16
1.92
108899102--108900069
189
5.1
186
79
10
899
40
20
22
16
1.91
108899354--108900156
318
2.5
318
90
2
1200
40
20
21
17
1.91
108899782--108900160
60
6.0
60
74
12
303
40
19
21
17
1.91
108900224--108900320
48
2.0
48
89
0
149
34
19
23
22
1.97
108900153--108900389
117
2.0
117
84
1
305
35
19
24
21
1.96
108900270--108900621
69
5.1
69
80
5
379
34
21
23
21
1.97
108900084--108900458
186
2.0
185
82
4
450
35
20
23
20
1.96
108900285--108900689
69
5.9
68
79
7
345
34
22
22
20
1.97
108901902--108901930
5
5.8
5
100
0
58
0
0
17
82
0.66
108909525--108909566
21
2.0
21
100
0
84
38
28
9
23
1.86
108917423--108917530
26
4.2
26
92
0
180
37
23
7
32
1.82
108924482--108924615
26
5.2
26
95
0
223
35
23
7
33
1.83
108926678--108926721
21
2.1
21
87
4
63
54
2
2
40
1.25
108930553--108930723
85
2.0
85
95
0
306
33
16
18
31
1.93
108933349--108933450
23
4.3
24
78
14
104
36
2
4
55
1.36
108934781--108934826
24
2.0
23
83
12
58
58
2
10
28
1.43
108935049--108935089
19
2.2
19
86
8
57
63
0
2
34
1.08
108937136--108937199
21
3.2
21
77
14
73
32
1
6
59
1.32
108940087--108940126
19
2.1
19
100
0
80
57
5
17
20
1.58
108945790--108945822
16
2.1
16
100
0
66
36
0
24
39
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108950081--108950564
220
2.2
219
90
0
752
32
17
22
28
1.96
108950535--108950846
78
4.0
78
87
1
430
33
16
24
25
1.96
108950786--108951014
45
5.1
45
74
10
207
31
16
26
25
1.96
108951364--108951426
17
3.5
17
83
16
83
39
9
14
36
1.78
108951364--108951426
18
3.5
18
89
8
85
39
9
14
36
1.78
108951355--108951434
35
2.2
37
85
12
114
40
7
16
36
1.77
108951355--108951426
19
3.9
19
83
10
105
38
8
15
37
1.77
108951405--108951449
23
2.0
23
86
4
65
37
6
17
37
1.76
108960361--108960401
20
2.0
20
100
0
82
29
14
9
46
1.77
108961483--108961553
37
1.9
37
88
0
106
50
4
7
38
1.49
108962863--108962900
13
3.1
13
88
7
53
71
0
0
28
0.87
108964547--108964705
27
5.9
27
77
11
148
34
20
25
20
1.96
108964589--108964708
54
2.2
54
95
0
213
33
23
25
17
1.96
108972227--108972313
27
3.2
28
91
6
144
35
24
24
16
1.94
108974246--108974298
3
17.7
3
80
7
63
33
5
0
60
1.20
108974248--108974292
23
2.0
23
95
0
81
31
6
0
62
1.21
108974253--108974290
20
1.9
20
88
0
58
31
5
0
63
1.17
108974399--108974458
3
20.0
3
100
0
120
33
0
0
66
0.92
108974751--108974828
20
4.0
20
72
20
65
35
2
3
57
1.30
108974731--108974813
40
2.1
40
84
4
105
34
4
3
56
1.38
108974740--108974822
11
7.7
11
67
20
50
34
3
4
56
1.38
108974785--108974839
20
2.6
22
83
16
80
38
5
5
50
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108975004--108975035
15
2.1
15
94
0
55
31
3
0
65
1.08
108984570--108984621
24
2.2
24
85
0
68
53
9
3
32
1.51
108990909--108990948
10
4.0
10
83
9
55
35
0
42
22
1.54
108994989--108995080
18
5.2
18
86
2
132
32
15
23
28
1.95
108994990--108995076
35
2.4
36
94
1
149
33
14
22
28
1.94
108997259--108997291
16
2.1
16
100
0
66
30
12
6
51
1.63
109003504--109003552
24
2.0
24
100
0
98
36
20
4
38
1.72
109008765--109008810
22
2.0
23
91
4
76
43
4
10
41
1.59
109008923--109008956
16
2.1
16
88
0
50
67
0
32
0
0.91
109009792--109009893
25
4.3
25
80
10
99
17
24
19
38
1.93
109010786--109010830
16
2.9
16
83
3
56
24
0
6
68
1.13
109024214--109024252
20
2.0
20
84
0
51
38
7
5
48
1.54
109024578--109024610
16
2.1
16
94
0
57
33
18
12
36
1.88
109028774--109029088
162
2.0
156
85
6
427
35
10
11
42
1.74
109030370--109030435
29
2.2
30
81
7
73
34
10
6
48
1.62
109030911--109030948
10
3.8
10
83
13
51
23
7
2
65
1.32
109031983--109032012
14
2.1
14
100
0
60
40
43
6
10
1.64
109039326--109039365
19
2.1
19
95
0
71
27
0
0
72
0.85
109042051--109042096
10
4.5
10
86
5
65
8
13
0
78
0.97
109056200--109056301
18
5.7
18
78
0
114
32
33
12
21
1.91
109056200--109056301
36
2.8
36
80
0
132
32
33
12
21
1.91
109056459--109056506
24
2.0
25
87
4
71
56
10
10
22
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109058794--109058832
19
2.1
19
100
0
78
53
5
15
25
1.62
109059575--109059961
114
3.4
114
80
5
453
25
27
28
18
1.98
109066521--109066560
19
2.0
20
85
4
55
27
2
10
60
1.42
109071283--109071319
19
1.9
19
88
0
56
51
5
13
29
1.63
109072712--109072823
47
2.4
47
83
5
147
35
22
16
25
1.94
109073586--109073666
4
19.8
4
77
5
72
4
24
3
66
1.28
109079976--109080086
47
2.4
47
83
6
145
35
22
16
26
1.95
109080849--109080933
4
20.8
4
75
4
71
5
24
3
65
1.31
109084478--109084519
21
2.0
22
86
13
63
45
9
7
38
1.64
109085063--109085101
16
2.4
16
80
12
53
41
0
5
53
1.23
109085721--109085752
16
1.9
17
93
6
57
71
6
0
21
1.07
109090421--109090469
24
2.0
24
100
0
98
55
8
0
36
1.30
109094732--109094774
19
2.3
19
84
8
52
37
13
0
48
1.43
109095885--109095912
14
2.0
14
100
0
56
14
14
0
71
1.15
109095909--109095979
6
12.2
6
76
19
53
35
2
12
49
1.56
109095901--109095956
27
2.1
27
96
0
103
30
7
8
53
1.59
109095938--109095981
20
2.1
21
95
4
81
38
0
13
47
1.43
109096934--109096985
12
4.2
12
70
4
50
36
19
9
34
1.84
109096875--109096985
33
3.2
33
84
7
125
38
18
10
32
1.85
109109981--109110030
26
2.0
24
88
7
73
64
6
0
30
1.18
109110001--109110059
21
2.8
21
78
12
59
69
8
0
22
1.15
109110035--109110088
28
2.0
27
82
10
65
68
11
0
20
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109110315--109110346
16
2.0
16
93
0
55
25
34
15
25
1.95
109118650--109118686
15
2.5
15
90
0
56
27
35
13
24
1.93
109118659--109118688
15
2.0
15
100
0
60
20
40
13
26
1.89
109119511--109119566
6
9.5
6
84
3
78
32
0
1
66
1.03
109119504--109119576
12
6.2
11
81
10
74
31
2
1
64
1.16
109121914--109121949
18
2.0
18
100
0
72
38
16
22
22
1.93
109121910--109121956
18
2.9
15
82
17
67
40
19
17
23
1.91
109123516--109123592
29
2.6
29
82
10
86
33
19
12
33
1.90
109128109--109128143
17
2.1
17
100
0
70
0
17
11
71
1.14
109128109--109128152
17
2.6
17
89
7
54
2
15
11
70
1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356