Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  99  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31310976--31311020
5
9.0
5
100
0
90
40
0
0
60
0.97
31311108--31311151
5
8.8
5
100
0
88
40
0
0
59
0.98
31310886--31311151
132
2.0
132
100
0
532
41
4
6
46
1.50
31311200--31311251
26
2.0
26
82
14
63
71
0
25
3
1.03
31317380--31317413
16
2.1
16
88
5
50
32
0
11
55
1.36
31317794--31317838
16
3.0
16
81
15
60
53
2
0
44
1.13
31319378--31319415
14
2.7
14
91
0
58
39
5
18
36
1.73
31325731--31325816
41
2.1
41
93
4
149
23
5
11
59
1.54
31325893--31326091
66
3.2
65
68
24
201
42
3
6
48
1.44
31326099--31326150
15
3.6
15
80
12
56
44
0
1
53
1.11
31325855--31326263
120
3.4
120
94
1
714
43
2
4
49
1.37
31326215--31326265
18
3.0
18
78
18
56
47
0
0
52
1.00
31326395--31326504
45
2.6
44
84
11
142
32
28
4
34
1.77
31326485--31326534
16
3.1
16
91
0
73
34
34
0
32
1.58
31327363--31327422
31
1.9
31
86
6
86
41
6
13
38
1.70
31330327--31330363
11
3.1
12
92
7
58
0
51
0
48
1.00
31330828--31330901
3
24.3
3
71
8
51
31
4
5
59
1.38
31330867--31330912
23
2.0
23
83
8
58
30
2
10
56
1.46
31330931--31330978
24
2.0
24
84
12
62
29
4
0
66
1.10
31333418--31333461
19
2.3
20
84
7
56
27
20
11
40
1.86
31337542--31337805
86
3.1
86
89
0
402
26
22
23
27
2.00
31337988--31338124
44
3.1
43
65
16
118
30
21
21
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31337887--31338212
175
1.9
173
88
2
501
29
21
23
26
1.99
31337887--31338212
88
3.7
87
92
2
503
29
21
23
26
1.99
31337887--31338315
87
5.0
88
87
3
489
27
20
24
27
1.99
31338666--31338981
46
6.8
46
71
14
139
31
19
21
27
1.97
31338574--31339015
221
2.0
226
86
7
630
31
18
21
28
1.97
31338720--31338834
46
2.5
46
80
8
146
28
20
22
28
1.98
31338713--31339103
188
2.1
187
87
4
556
32
19
19
27
1.96
31338949--31339052
44
2.4
44
77
3
111
31
16
20
31
1.94
31340162--31340198
11
3.1
12
92
7
58
0
51
0
48
1.00
31340661--31340734
3
24.3
3
71
8
51
31
4
5
59
1.38
31340700--31340745
23
2.0
23
83
8
58
30
2
10
56
1.46
31340764--31340811
24
2.0
24
84
12
62
29
4
0
66
1.10
31346337--31346445
37
2.9
37
95
0
191
26
31
19
22
1.98
31346607--31346790
47
4.0
47
92
1
282
25
29
13
32
1.93
31346690--31346765
22
3.3
22
67
22
66
25
30
13
31
1.93
31351647--31351696
20
2.5
20
83
0
64
44
16
22
18
1.87
31353411--31353475
16
4.4
16
71
26
63
24
4
3
67
1.24
31353422--31353477
27
2.2
25
87
6
76
23
3
3
69
1.20
31358193--31358410
79
2.7
79
82
8
239
25
26
22
26
2.00
31358207--31358410
40
5.1
40
81
8
229
25
26
22
25
2.00
31364755--31364794
21
2.0
21
95
5
73
25
30
35
10
1.88
31366061--31366184
50
2.5
49
80
5
142
25
27
17
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31366247--31366365
46
2.6
45
83
10
136
24
26
15
33
1.95
31368931--31368955
11
2.3
11
100
0
50
36
40
0
24
1.55
31371480--31371537
26
2.2
26
78
0
62
48
0
12
39
1.40
31375937--31375997
27
2.3
27
94
2
106
50
19
8
21
1.73
31377790--31377864
31
2.4
31
84
2
87
30
12
6
50
1.65
31399446--31399529
43
2.0
43
83
4
107
26
14
25
34
1.94
31403576--31403751
46
3.8
45
81
10
212
21
21
29
28
1.98
31403573--31403743
93
1.8
93
94
0
306
21
21
29
27
1.98
31425385--31426328
475
2.0
475
93
0
1602
29
18
16
35
1.93
31433796--31434056
40
6.6
40
87
3
312
26
28
20
24
1.99
31433988--31434065
40
1.9
41
82
10
97
26
28
21
23
1.99
31451511--31452573
178
6.0
178
86
1
1339
28
17
27
26
1.98
31451605--31452595
44
22.3
44
66
11
297
27
17
27
26
1.98
31454264--31454302
10
3.5
11
86
10
53
20
2
0
76
0.90
31454360--31454399
3
13.3
3
89
0
53
30
7
0
62
1.23
31455537--31455572
10
3.5
10
85
7
54
16
0
30
52
1.44
31462072--31462286
39
5.5
39
91
1
342
27
27
24
20
1.99
31462300--31462410
39
2.8
39
95
0
195
26
24
20
28
1.99
31465038--31465083
22
2.1
22
95
0
83
23
17
15
43
1.87
31467426--31467648
39
5.7
40
85
8
257
24
26
22
26
2.00
31467426--31467648
79
2.8
80
83
9
255
24
26
22
26
2.00
31470982--31471022
21
2.0
21
95
0
73
41
7
9
41
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31476249--31476291
22
2.0
22
90
9
70
37
27
13
20
1.91
31478330--31478383
27
2.0
27
85
0
72
42
7
11
38
1.68
31478630--31478852
50
4.6
48
81
7
261
26
18
26
29
1.98
31486112--31486204
24
3.9
24
83
5
118
21
22
19
36
1.95
31487962--31488074
56
2.0
56
100
0
226
46
8
12
31
1.72
31488112--31488176
22
3.1
21
75
24
66
32
0
3
64
1.09
31488128--31488193
18
3.3
20
77
12
66
31
1
3
63
1.19
31503130--31503449
96
3.3
95
83
1
363
26
19
30
23
1.98
31503120--31503435
48
6.6
48
79
2
321
26
18
30
24
1.98
31503124--31503437
144
2.2
144
84
3
409
26
18
30
24
1.98
31504230--31504334
55
1.9
55
92
0
174
13
31
29
25
1.94
31508248--31508287
19
2.1
19
85
0
53
42
12
10
35
1.76
31511212--31511242
12
2.6
12
94
0
53
22
35
22
19
1.96
31512110--31512193
43
2.0
43
100
0
168
33
11
25
29
1.91
31520094--31520356
40
6.6
40
88
3
325
24
20
27
26
1.99
31520133--31520391
80
3.3
80
85
3
256
25
20
27
25
1.99
31526021--31526151
40
3.3
40
87
0
163
24
21
26
27
1.99
31525968--31526188
40
5.6
40
78
7
130
24
21
26
27
1.99
31529545--31529607
15
4.2
15
82
8
83
60
14
12
12
1.60
31532537--31532706
93
1.8
93
93
0
295
30
28
19
21
1.98
31532528--31532703
46
3.8
46
80
15
209
30
28
19
21
1.97
31544806--31544914
58
1.9
57
86
5
157
25
15
22
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31544806--31544931
57
2.2
59
84
4
159
26
15
23
34
1.94
31551874--31551992
42
2.8
42
78
2
132
30
15
22
31
1.95
31558461--31558573
43
2.6
43
84
4
129
32
26
15
25
1.95
31563051--31563102
2
26.0
2
100
0
104
0
50
0
50
1.00
31566002--31566058
20
2.8
20
84
10
64
45
3
0
50
1.18
31572475--31572525
2
25.5
2
83
0
66
47
47
3
1
1.32
31573704--31573743
21
1.9
21
100
0
80
27
17
30
25
1.97
31574191--31574242
6
8.7
6
82
0
50
21
7
11
59
1.56
31574261--31574326
6
11.0
6
78
0
60
22
6
15
56
1.61
31574399--31574595
47
4.2
47
93
0
331
27
13
17
41
1.87
31574900--31574928
15
1.9
15
100
0
58
13
6
37
41
1.72
31576510--31576642
41
3.2
42
84
5
148
27
10
19
42
1.84
31576510--31576642
42
3.2
42
85
5
166
27
10
19
42
1.84
31577785--31577923
59
2.4
59
92
0
224
30
19
14
35
1.91
31583411--31583583
85
2.0
85
98
0
337
24
22
23
29
1.99
31584143--31584187
23
2.0
23
91
4
74
71
13
2
13
1.25
31587432--31587585
71
2.2
71
90
2
256
20
20
16
42
1.90
31588313--31588637
90
3.6
90
89
2
474
26
5
15
52
1.64
31594713--31595502
177
4.5
176
84
3
899
27
23
16
32
1.96
31596647--31596801
54
2.8
54
82
6
170
15
21
19
43
1.88
31604935--31605061
42
3.0
42
85
6
170
29
26
13
29
1.94
31605020--31605143
47
2.7
46
85
5
160
29
27
15
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31605148--31605176
7
4.1
7
100
0
58
13
27
13
44
1.82
31605175--31605323
31
4.8
31
87
3
210
26
26
19
27
1.99
31605305--31605427
50
2.4
51
90
2
194
26
21
15
36
1.93
31612808--31612889
26
3.3
26
68
23
68
23
20
0
56
1.43
31612815--31612894
21
3.5
21
72
20
61
25
18
0
56
1.42
31612955--31613068
22
5.2
22
64
16
74
38
3
9
48
1.53
31612943--31613134
44
4.4
44
91
0
276
38
4
9
47
1.56
31613065--31613134
22
3.2
22
67
15
54
38
4
8
48
1.53
31613201--31613238
19
2.1
19
85
5
51
28
2
7
60
1.38
31615699--31615800
52
2.0
51
84
11
136
34
16
14
34
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356