genome.fa.s11.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  162  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52440932--52441115	40	4.6	40	83	7	205	27	27	21	23	1.99
52448808--52448985	40	4.5	39	82	8	130	27	27	20	24	1.99
52448853--52449038	80	2.3	80	83	9	229	27	27	20	23	1.99
52448855--52449038	40	4.6	40	83	7	205	27	27	21	23	1.99
52453356--52453428	35	2.1	35	94	0	128	24	23	12	39	1.89
52460314--52460340	9	3.0	9	100	0	54	55	22	0	22	1.44
52462196--52462265	24	3.2	24	62	29	64	31	11	0	57	1.34
52462180--52462265	42	2.0	42	97	0	163	29	11	0	59	1.33
52469416--52469469	27	2.0	27	85	0	72	38	7	14	38	1.75
52469702--52469940	49	4.8	49	76	7	232	25	18	28	28	1.98
52473144--52473203	31	1.9	31	93	0	102	25	21	16	36	1.94
52473401--52473494	23	4.0	24	83	9	122	28	22	19	29	1.98
52473544--52473610	20	3.3	20	89	0	107	32	20	13	32	1.92
52478298--52478352	27	2.0	27	85	0	74	43	7	10	38	1.68
52483459--52483676	40	5.5	40	88	2	289	22	22	28	25	1.99
52487224--52487270	19	2.5	18	80	16	51	38	0	0	61	0.96
52495078--52495102	13	1.9	13	100	0	50	60	0	0	40	0.97
52495237--52495281	17	2.6	17	83	16	58	71	6	0	22	1.09
52495244--52495295	18	2.9	18	80	11	54	69	7	1	21	1.24
52497914--52498592	47	14.4	47	90	0	1070	28	31	8	32	1.86
52498058--52498136	25	3.3	25	69	16	85	32	29	3	34	1.75
52498177--52498252	22	3.3	22	69	16	73	25	30	11	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52501302--52501345	18	2.4	18	88	0	61	27	15	18	38	1.91
52503570--52503856	48	6.0	47	77	4	279	25	28	17	28	1.97
52503574--52503856	96	2.9	95	83	3	325	26	28	16	28	1.97
52503571--52503843	144	1.9	144	83	3	361	24	28	17	28	1.97
52518877--52518908	5	6.4	5	96	0	55	78	0	3	18	0.89
52542284--52542324	11	3.7	11	100	0	82	41	19	9	29	1.83
52559751--52559880	42	3.0	42	78	5	143	24	18	28	28	1.98
52560150--52560423	38	7.2	38	89	1	372	20	22	25	31	1.98
52560416--52560545	45	2.9	45	87	2	181	21	20	28	29	1.98
52572174--52572343	43	4.0	42	73	9	146	35	22	15	27	1.94
52579775--52579920	43	3.4	43	80	8	163	30	27	17	23	1.97
52579783--52579941	43	3.8	41	79	10	153	32	25	16	25	1.97
52579783--52579941	86	1.9	84	83	11	209	32	25	16	25	1.97
52584507--52584557	21	2.5	20	77	20	61	19	17	0	62	1.32
52600139--52600172	17	1.9	18	88	5	52	11	17	0	70	1.16
52605881--52605965	42	2.0	42	97	0	161	35	16	15	32	1.90
52608330--52608365	18	2.1	19	85	15	51	52	25	0	22	1.47
52609200--52609274	32	2.5	30	82	10	91	36	17	2	44	1.63
52609257--52609306	26	2.0	25	84	11	66	38	14	4	44	1.63
52611966--52612007	16	2.6	16	85	10	59	0	9	2	88	0.61
52611966--52612018	23	2.4	22	87	9	72	3	9	1	84	0.81
52613174--52613235	8	7.6	8	77	10	63	70	1	3	24	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52613169--52613230	26	2.4	27	86	8	92	70	1	3	24	1.10
52614621--52614698	33	2.4	33	82	4	95	34	12	16	35	1.87
52636000--52636037	15	2.5	15	84	12	51	10	18	15	55	1.68
52648948--52649063	31	3.7	31	86	2	153	30	18	25	26	1.98
52648945--52649092	62	2.4	60	81	7	183	31	15	25	27	1.96
52649051--52649123	29	2.5	29	93	0	128	28	13	28	28	1.94
52649126--52649324	33	6.0	33	85	0	254	34	8	21	36	1.84
52651468--52651619	27	5.6	27	92	3	232	27	13	28	30	1.94
52651468--52651619	55	2.8	55	92	0	241	27	13	28	30	1.94
52659106--52659131	12	2.2	12	100	0	52	50	7	0	42	1.31
52659585--52659706	27	4.4	28	85	4	149	25	13	29	31	1.93
52659585--52659706	55	2.2	56	86	1	165	25	13	29	31	1.93
52659610--52659719	27	4.0	27	87	4	114	29	12	26	31	1.93
52682608--52682632	13	1.9	13	100	0	50	24	24	32	20	1.98
52697086--52697122	18	2.1	18	100	0	74	40	16	16	27	1.89
52706589--52706704	28	4.2	28	81	2	137	36	21	24	18	1.95
52706589--52706704	56	2.1	55	85	3	153	36	21	24	18	1.95
52707933--52707983	18	2.8	18	82	8	68	62	0	33	3	1.13
52712558--52712853	50	5.9	50	75	5	229	26	14	27	32	1.95
52712608--52712801	101	1.9	99	83	5	246	27	15	26	29	1.96
52712617--52712839	101	2.2	98	80	7	236	26	15	26	31	1.96
52723070--52723245	46	3.8	45	76	7	174	31	28	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52729135--52729557	40	10.6	40	92	1	627	27	28	20	24	1.99
52737207--52737314	39	2.9	37	82	9	114	27	27	19	25	1.99
52737326--52737578	40	6.9	39	77	16	231	25	27	20	25	1.99
52737314--52737513	69	2.8	73	84	15	251	25	28	20	26	1.99
52749446--52749478	17	1.9	17	88	11	50	21	6	0	72	1.05
52751019--52751195	27	6.5	27	81	3	176	25	15	29	28	1.96
52751019--52751174	82	1.9	81	85	3	215	26	16	29	28	1.96
52751015--52751195	82	2.2	81	81	2	211	26	16	28	28	1.97
52758611--52758787	27	6.5	27	81	3	176	25	15	29	28	1.96
52758611--52758766	82	1.9	81	85	3	215	26	16	29	28	1.96
52758607--52758787	82	2.2	81	81	2	211	26	16	28	28	1.97
52764027--52764089	30	2.1	30	93	0	108	28	3	11	57	1.49
52764171--52764210	18	2.2	18	86	8	55	20	0	12	67	1.22
52764211--52764244	12	2.8	12	90	0	50	67	0	0	32	0.91
52764644--52764685	20	2.0	21	86	4	59	52	0	0	47	1.00
52767401--52767430	15	1.9	16	93	6	53	26	0	0	73	0.84
52773897--52774120	40	5.6	40	83	6	240	25	27	21	25	1.99
52774052--52774129	40	1.9	41	82	10	97	26	28	20	24	1.99
52776918--52776998	26	3.2	26	65	16	71	32	28	14	24	1.95
52776911--52777155	49	4.9	49	84	3	301	30	26	17	25	1.97
52782189--52782289	39	2.6	39	95	0	175	12	24	22	39	1.89
52788498--52788615	36	3.3	35	82	4	128	35	12	16	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52788516--52788597	18	4.6	18	78	0	83	37	13	14	34	1.85
52788498--52788609	18	6.2	18	72	8	75	33	13	16	35	1.88
52790738--52790762	12	2.1	12	100	0	50	44	24	8	24	1.80
52806306--52806480	27	6.4	27	82	3	181	27	14	28	29	1.96
52806307--52806457	55	2.8	55	84	3	198	27	15	29	27	1.96
52806307--52806462	82	1.9	81	85	3	215	26	15	29	28	1.96
52806303--52806480	82	2.2	81	80	3	205	27	15	28	29	1.96
52814875--52814912	19	2.0	20	85	15	53	39	23	0	36	1.55
52815141--52815311	93	1.8	93	91	2	281	28	29	20	22	1.98
52815133--52815304	46	3.7	45	75	14	163	29	29	19	22	1.98
52832259--52832364	45	2.3	46	91	1	178	42	15	21	20	1.89
52840628--52840890	47	5.6	45	76	11	201	22	29	19	28	1.98
52861846--52862152	40	7.7	40	96	0	560	21	28	20	29	1.98
52869769--52869806	19	2.0	19	100	0	76	26	26	15	31	1.96
52869823--52869916	40	2.3	40	100	0	188	27	25	19	27	1.99
52876862--52877229	27	13.6	27	86	1	504	39	20	8	31	1.83
52876862--52877283	81	5.2	80	87	2	499	38	20	9	31	1.84
52876862--52877338	27	17.7	27	81	5	423	38	20	8	31	1.83
52877330--52877471	27	5.2	28	87	6	143	34	21	20	23	1.97
52877322--52877471	54	2.8	54	85	6	189	35	20	19	24	1.96
52877322--52877471	81	1.9	81	84	5	205	35	20	19	24	1.96
52877917--52877980	22	2.9	22	75	9	67	21	21	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52878139--52878240	27	3.8	27	84	5	125	19	23	20	36	1.95
52878400--52878496	6	15.8	6	72	16	74	19	17	15	47	1.83
52878377--52878487	31	3.5	31	90	1	159	19	17	12	50	1.77
52878390--52878512	31	4.0	31	82	3	142	20	17	13	48	1.80
52885962--52886006	19	2.4	18	80	16	56	44	8	4	42	1.56
52886447--52886479	11	3.1	11	86	8	50	21	0	0	78	0.75
52886605--52886638	13	2.6	13	90	0	50	55	0	2	41	1.15
52886605--52886654	15	3.5	15	81	5	59	54	0	6	40	1.25
52888106--52888134	14	2.0	15	93	6	51	48	0	13	37	1.43
52888410--52888454	19	2.4	19	82	14	58	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356