genome.fa.s11.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  214  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69787356--69787443	40	2.2	40	79	2	97	26	28	22	22	1.99
69787379--69787523	40	3.6	40	83	4	175	22	26	24	26	2.00
69787876--69787951	38	2.0	38	97	0	143	31	25	13	30	1.93
69793933--69794110	28	6.4	28	89	2	234	25	13	28	32	1.94
69801373--69801550	28	6.4	28	89	2	234	25	13	28	32	1.94
69805651--69805795	40	3.6	40	83	4	175	24	26	24	24	2.00
69806148--69806223	38	2.0	38	97	0	143	31	25	13	30	1.93
69807038--69807299	45	5.9	45	88	2	370	22	20	30	26	1.98
69812697--69812775	34	2.3	34	91	2	122	25	18	24	31	1.98
69816076--69816241	40	4.2	40	87	6	223	25	20	27	26	1.99
69817533--69817562	7	4.3	7	100	0	60	86	0	0	13	0.57
69824831--69825046	50	4.3	50	78	6	222	30	9	19	40	1.84
69824831--69825046	100	2.2	100	83	4	265	30	9	19	40	1.84
69828106--69828289	67	2.9	63	79	7	208	29	17	29	22	1.97
69844306--69844476	93	1.8	93	93	2	299	30	28	19	21	1.98
69844301--69844473	46	3.7	46	78	14	203	31	27	19	21	1.97
69844895--69844954	30	2.0	30	87	6	86	31	25	6	36	1.82
69858057--69858272	50	4.3	51	75	9	185	30	11	18	39	1.86
69858061--69858272	100	2.1	100	81	1	237	31	10	18	39	1.86
69859265--69859298	17	2.0	17	88	0	50	29	0	14	55	1.40
69860193--69860240	22	2.2	22	100	0	96	27	20	0	52	1.47
69862439--69862521	41	2.0	41	95	0	148	44	26	4	24	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69862458--69862525	21	3.3	21	65	19	61	47	25	2	25	1.66
69863797--69863863	25	2.7	24	79	4	71	37	14	26	20	1.92
69871495--69871599	27	3.9	28	79	9	110	18	23	20	37	1.94
69891113--69891141	13	2.2	13	100	0	58	31	0	13	55	1.39
69901710--69901800	42	2.2	42	82	7	105	28	25	18	27	1.98
69901753--69902125	48	7.6	48	87	3	548	28	25	20	26	1.99
69901753--69902131	150	2.6	144	90	3	553	28	25	20	26	1.99
69906325--69906419	33	2.9	33	83	0	109	27	26	20	26	1.99
69906608--69906688	27	3.0	28	82	8	89	35	22	20	20	1.96
69906829--69906945	27	4.3	27	86	2	137	23	17	20	38	1.93
69906924--69907064	27	5.3	27	79	4	106	33	11	19	36	1.87
69906856--69906960	54	1.9	54	82	3	131	26	13	20	39	1.90
69906923--69907058	54	2.5	53	77	3	155	35	11	16	36	1.86
69907269--69907304	17	2.1	18	89	5	56	19	41	25	13	1.88
69910406--69910491	43	2.0	43	86	4	120	27	30	19	22	1.98
69928002--69928096	27	3.5	26	80	8	93	41	20	8	30	1.81
69928099--69928423	27	12.0	27	88	0	470	28	20	8	41	1.82
69928420--69928628	27	7.8	26	82	8	161	42	17	7	32	1.78
69928425--69928628	107	1.9	107	83	6	261	42	17	7	31	1.78
69928452--69928640	27	7.0	26	81	8	175	41	17	8	32	1.80
69928414--69928640	54	4.2	53	80	7	235	40	18	8	33	1.81
69928425--69928659	80	2.9	79	79	9	224	40	18	8	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69928425--69928656	107	2.2	107	80	7	258	41	18	8	32	1.80
69928647--69928941	27	11.0	27	92	1	461	33	20	21	24	1.97
69929343--69929430	6	14.3	6	71	17	56	20	18	12	48	1.80
69929343--69929446	31	3.4	31	77	4	104	20	17	12	50	1.78
69941522--69941697	46	3.8	46	78	12	207	20	20	29	29	1.98
69941519--69941690	93	1.8	93	94	0	308	20	20	29	28	1.98
69944279--69944403	63	2.0	63	98	0	241	39	18	21	20	1.93
69955457--69955507	25	2.1	23	80	16	59	37	1	1	58	1.20
69956390--69956429	21	1.9	21	85	10	55	50	17	27	5	1.67
69960228--69960393	83	2.0	83	92	4	282	47	10	19	22	1.79
69960504--69960711	55	3.8	54	75	2	184	21	23	16	38	1.92
69970487--69970648	40	4.1	39	76	12	141	25	20	27	25	1.99
69970854--69971166	47	6.6	47	94	1	509	32	7	30	29	1.86
69970854--69971166	96	3.3	94	91	3	509	32	7	30	29	1.86
69974614--69974702	43	2.0	44	93	2	153	34	26	19	19	1.95
69976132--69976296	46	3.6	46	85	6	176	30	18	27	23	1.98
69976230--69976392	48	3.4	49	78	12	164	30	17	27	23	1.97
69979009--69979179	80	2.1	80	95	0	315	39	9	19	31	1.83
69983883--69984267	40	9.6	40	93	1	628	24	27	20	27	1.99
69985665--69985842	27	6.6	27	84	3	205	29	28	15	26	1.96
69985686--69985841	82	1.9	81	88	3	233	29	28	15	26	1.96
69993730--69993907	27	6.6	27	83	3	178	30	27	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69993751--69993906	82	1.9	81	88	3	233	29	28	15	26	1.96
70005759--70006063	40	7.6	40	91	1	477	24	28	20	27	1.99
70011659--70011717	29	2.0	29	86	0	82	42	5	27	25	1.76
70013234--70013336	27	3.8	27	89	0	116	32	25	5	36	1.80
70013261--70013679	27	15.4	27	76	8	145	37	21	8	33	1.83
70013216--70013500	54	5.2	54	73	5	151	35	22	6	35	1.80
70013329--70013401	28	2.6	28	89	2	103	43	20	5	30	1.74
70013568--70013699	55	2.4	54	83	1	147	40	21	8	29	1.82
70014504--70014590	20	4.3	20	89	2	131	40	9	18	32	1.82
70014640--70014827	26	7.3	26	87	2	240	28	22	21	27	1.99
70014640--70014827	52	3.7	52	87	3	267	28	22	21	27	1.99
70014640--70014814	78	2.3	77	91	2	280	26	23	21	28	1.99
70014960--70015051	42	2.2	42	88	0	130	30	15	20	33	1.93
70015075--70015155	31	2.6	31	96	3	146	32	18	24	24	1.97
70018175--70018227	26	2.0	26	100	0	106	35	11	11	41	1.77
70023973--70024011	20	2.0	20	94	0	69	28	7	17	46	1.76
70030695--70030877	27	6.7	27	86	5	208	26	15	28	28	1.96
70030696--70030898	27	7.5	27	84	5	171	26	15	28	29	1.96
70033803--70034009	53	3.8	53	78	3	216	37	17	24	20	1.94
70042039--70042262	40	5.6	41	84	4	278	28	27	20	23	1.99
70042039--70042263	81	2.8	80	85	5	303	28	28	20	23	1.99
70049570--70049793	40	5.6	40	90	2	306	27	27	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70049570--70049794	81	2.8	80	86	4	310	27	28	21	22	1.99
70052106--70052309	53	3.8	53	73	5	131	37	17	23	21	1.94
70056882--70056989	26	4.2	26	88	4	164	36	22	7	34	1.82
70058657--70058699	17	2.6	17	81	3	52	41	20	4	32	1.73
70063205--70063245	19	2.2	19	90	0	64	36	12	17	34	1.87
70064072--70064144	20	3.7	20	66	14	53	31	8	0	60	1.26
70064673--70064731	28	2.1	28	100	0	118	42	13	20	23	1.88
70065281--70065318	14	2.5	16	83	12	53	26	0	2	71	1.00
70065668--70065723	17	3.3	17	78	9	69	62	3	1	32	1.23
70065933--70066063	69	1.9	67	84	9	176	41	9	9	38	1.72
70065933--70066086	67	2.2	67	78	15	163	43	8	10	37	1.69
70067988--70068028	6	6.7	6	88	5	64	39	14	14	31	1.87
70067988--70068028	19	2.2	18	91	4	64	39	14	14	31	1.87
70067975--70068035	25	2.5	24	86	2	77	37	14	16	31	1.89
70067988--70068035	19	2.5	19	86	6	53	39	14	16	29	1.88
70080022--70080063	17	2.5	17	96	0	75	21	23	35	19	1.96
70082914--70082973	26	2.2	28	88	8	88	60	0	1	38	1.07
70083076--70083111	18	2.0	18	88	0	54	50	0	5	44	1.25
70085784--70085827	22	1.9	24	86	9	65	38	4	2	54	1.33
70087278--70087360	37	2.2	38	77	14	93	62	2	1	33	1.16
70087736--70087797	10	6.3	10	77	9	56	33	0	3	62	1.11
70087888--70087948	9	6.7	9	70	10	52	31	3	3	62	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70087927--70087965	16	2.4	16	95	0	69	35	0	2	61	1.10
70088047--70088158	9	11.8	9	70	17	75	32	0	2	64	1.14
70088079--70088164	28	3.1	26	80	11	91	33	1	2	62	1.15
70088070--70088158	37	2.4	36	80	12	101	31	1	2	65	1.12
70089853--70089892	19	2.1	19	86	9	55	55	5	5	35	1.44
70090262--70090335	17	4.5	17	68	21	50	40	2	1	55	1.22
70096769--70097030	39	6.7	40	87	7	337	25	22	27	24	2.00
70104784--70105045	39	6.7	40	87	7	337	25	22	27	24	2.00
70109716--70109762	21	2.1	21	81	14	51	42	0	25	31	1.55
70125774--70125919	43	3.4	43	91	0	229	22	32	23	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356