Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  144  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46378919--46379580
194
3.4
193
94
2
1122
34
8
27
29
1.86
46379654--46379769
37
3.1
37
94
1
196
24
18
31
26
1.97
46381292--46381361
25
2.8
25
91
6
115
25
24
22
27
2.00
46381291--46381374
25
3.4
24
85
10
109
28
22
22
26
1.99
46381292--46381386
50
1.9
50
82
8
122
27
23
23
26
2.00
46381581--46381664
31
2.7
31
88
1
125
32
15
26
26
1.96
46386186--46386215
14
2.1
14
100
0
60
30
10
33
26
1.89
46387866--46387906
21
1.9
22
85
5
57
31
24
4
39
1.76
46388318--46388390
28
2.6
28
84
0
101
30
23
12
34
1.91
46389368--46390615
624
2.0
622
98
0
2388
37
19
9
33
1.84
46392723--46392950
40
5.7
40
90
3
361
25
27
22
24
2.00
46400844--46401071
40
5.7
40
93
3
379
25
27
21
24
1.99
46405192--46405234
17
2.5
17
81
7
52
51
0
2
46
1.13
46405921--46405945
9
2.8
9
100
0
50
40
0
0
60
0.97
46407876--46408398
26
20.1
26
75
7
319
40
20
15
22
1.90
46408049--46408319
77
3.5
77
79
7
242
42
19
15
22
1.89
46414330--46414426
46
2.2
46
85
7
128
38
23
5
32
1.77
46414405--46414506
16
6.4
16
89
0
150
29
24
3
42
1.73
46414412--46414508
32
3.0
32
93
0
167
28
26
3
41
1.71
46419725--46419755
2
15.5
2
100
0
62
48
0
0
51
1.00
46421468--46421493
5
5.2
5
100
0
52
80
0
0
19
0.71
46424944--46425022
5
15.8
5
100
0
158
59
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46427151--46427179
15
1.9
15
100
0
58
41
0
0
58
0.98
46427779--46427905
62
2.0
62
100
0
254
14
24
36
25
1.93
46429171--46429308
60
2.3
60
83
6
172
28
18
25
27
1.98
46431838--46432022
40
4.6
40
87
1
264
23
23
27
25
2.00
46441263--46441434
46
3.7
46
75
13
181
21
20
29
29
1.98
46441256--46441427
93
1.8
93
92
0
290
22
21
28
27
1.99
46442759--46442881
40
3.1
40
83
2
158
24
24
26
24
2.00
46447641--46447755
46
2.6
45
80
5
126
26
18
15
40
1.90
46451342--46451388
24
2.0
22
84
8
58
44
4
6
44
1.49
46456393--46456494
6
16.7
6
72
20
52
73
1
3
20
1.09
46456380--46456499
16
8.4
13
68
21
55
72
1
3
22
1.08
46456393--46456471
23
3.4
22
77
11
68
73
1
2
22
1.03
46456380--46456436
15
3.5
16
85
7
62
77
1
0
21
0.86
46456374--46456497
10
11.3
10
68
23
56
72
1
3
22
1.08
46456396--46456527
66
2.1
63
84
9
171
68
1
6
24
1.21
46456425--46456807
3
127.7
3
75
8
307
63
1
6
28
1.28
46457468--46457502
18
1.9
18
100
0
70
85
0
14
0
0.59
46457469--46457503
6
5.8
6
87
12
54
85
0
14
0
0.59
46457645--46457956
155
2.0
155
100
0
624
18
15
26
39
1.90
46458281--46458745
44
10.6
44
76
3
416
29
21
17
31
1.96
46458281--46458740
133
3.5
133
79
4
443
30
21
17
31
1.96
46458284--46458740
89
5.2
89
80
2
354
30
21
17
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46458904--46459017
44
2.6
44
87
0
174
28
20
21
29
1.98
46462987--46463121
67
2.0
67
94
0
234
26
15
22
34
1.94
46464136--46464175
20
2.0
20
100
0
80
20
30
20
30
1.97
46466212--46466259
15
3.1
15
84
3
60
77
2
0
20
0.88
46466231--46466282
23
2.3
23
90
6
79
76
3
1
17
1.02
46466284--46466444
3
54.7
3
79
7
152
63
1
4
29
1.25
46466443--46466531
3
29.7
3
100
0
178
33
0
32
33
1.58
46466530--46466588
3
19.3
3
85
3
82
62
1
3
32
1.21
46468330--46468372
22
2.0
22
85
0
59
30
23
34
11
1.90
46470105--46470189
39
2.1
41
84
4
111
31
22
17
28
1.97
46477662--46477724
13
4.8
13
72
0
54
38
17
4
39
1.71
46477662--46477725
26
2.5
26
76
5
76
39
17
4
39
1.70
46478490--46478517
14
2.0
14
100
0
56
35
14
28
21
1.92
46486158--46486266
54
2.0
54
83
3
139
26
3
40
29
1.73
46487519--46487908
158
2.5
157
78
4
372
36
17
12
33
1.88
46491505--46491535
16
1.9
16
93
0
53
41
0
3
54
1.16
46491615--46491645
12
2.6
12
94
0
53
74
0
25
0
0.82
46492153--46492203
22
2.3
22
96
0
93
45
11
33
9
1.74
46494025--46494184
82
2.0
82
92
0
266
27
6
16
50
1.69
46500608--46500664
20
3.0
20
84
5
73
40
0
1
57
1.09
46520422--46520489
29
2.3
29
85
5
93
27
30
13
27
1.94
46520598--46520669
29
2.5
30
82
13
96
30
29
12
27
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46527935--46528013
29
2.7
30
82
13
110
29
30
15
25
1.96
46530112--46530286
43
4.1
43
77
7
158
25
14
26
32
1.95
46534288--46534508
38
5.8
38
89
3
313
29
24
22
22
1.99
46534292--46534508
75
2.9
76
88
4
314
30
23
22
23
1.99
46534288--46534508
113
1.9
114
87
4
322
29
24
22
22
1.99
46538764--46538935
93
1.8
93
94
0
308
27
29
21
21
1.99
46538757--46538932
46
3.8
46
79
12
207
28
28
21
21
1.98
46538806--46538944
47
3.0
46
75
16
144
29
28
19
22
1.98
46541437--46541478
17
2.3
19
80
12
52
66
9
4
19
1.38
46542243--46542723
244
2.0
243
94
0
845
24
22
13
40
1.90
46542706--46542746
17
2.4
18
80
12
50
34
9
21
34
1.87
46543084--46543153
29
2.4
28
84
11
88
30
22
14
32
1.94
46543084--46543185
29
3.4
29
79
16
86
27
24
12
35
1.92
46543240--46543368
62
2.1
61
82
1
150
27
24
14
33
1.94
46543967--46544038
30
2.4
30
88
4
110
25
25
6
43
1.79
46546329--46546397
20
3.5
20
73
0
57
23
21
18
36
1.95
46553270--46553326
19
2.8
22
67
22
52
35
1
0
63
1.05
46553361--46553419
21
2.8
22
80
7
61
22
0
8
69
1.15
46553390--46553438
25
2.0
24
88
4
71
30
0
6
63
1.19
46553552--46553582
5
6.0
5
92
7
53
0
41
58
0
0.98
46555055--46555098
12
3.7
12
87
0
61
25
31
29
13
1.94
46555059--46555093
18
1.9
18
94
0
61
25
34
28
11
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46555056--46555098
6
7.2
6
86
0
50
25
32
27
13
1.94
46560069--46560112
18
2.4
18
82
17
56
2
18
2
77
0.98
46563135--46563180
20
2.3
20
81
3
58
28
19
26
26
1.99
46568170--46568201
16
2.0
16
93
0
55
34
18
0
46
1.49
46568412--46568789
50
7.5
50
74
9
304
30
24
17
28
1.97
46568406--46568796
151
2.6
151
89
0
613
30
24
17
27
1.97
46568605--46568790
101
1.8
100
83
4
248
31
24
16
27
1.97
46569143--46569189
19
2.3
20
82
10
60
48
14
0
36
1.44
46576196--46576335
57
2.4
56
82
8
158
27
17
21
32
1.96
46578587--46578748
43
3.8
43
78
9
163
33
25
17
24
1.96
46582084--46582123
18
2.2
18
86
8
55
30
12
22
35
1.91
46586851--46586979
49
2.6
48
81
6
152
26
20
28
24
1.99
46595116--46595210
47
2.0
47
95
0
172
30
22
16
30
1.96
46595252--46595361
43
2.6
43
85
5
152
31
21
18
28
1.97
46598038--46598114
33
2.3
33
93
0
136
28
24
22
24
1.99
46598750--46598795
17
2.5
19
86
6
60
19
36
23
19
1.95
46598752--46598795
19
2.5
17
85
7
52
20
38
22
18
1.93
46616157--46616194
19
1.9
20
84
10
51
2
36
0
60
1.11
46623859--46623908
20
2.5
20
86
0
64
20
10
18
52
1.73
46625820--46625871
7
7.4
7
86
0
59
21
46
1
30
1.62
46625818--46625872
28
2.0
28
89
7
85
21
43
3
30
1.70
46628328--46628638
126
2.5
126
93
0
516
37
16
17
28
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46636872--46639190
773
3.0
773
99
0
4548
32
14
21
31
1.93
46641249--46641301
11
4.9
11
79
4
54
33
0
1
64
1.05
46646730--46646763
17
2.0
17
100
0
68
64
0
0
35
0.94
46646870--46646931
21
3.0
21
81
9
81
6
19
45
29
1.75
46647067--46647108
18
2.3
18
91
0
66
42
7
28
21
1.79
46647165--46647231
30
2.2
30
86
5
91
5
25
43
25
1.77
46649897--46649936
20
1.9
22
85
10
57
37
2
0
60
1.11
46652234--46652267
8
4.0
9
88
11
54
79
0
20
0
0.73
46652234--46652267
17
2.0
17
94
0
59
79
0
20
0
0.73
46653547--46653818
143
1.9
142
91
1
445
33
15
23
26
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356