genome.fa.s11.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  112  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35597102--35597141	11	3.5	11	83	12	53	65	0	2	32	1.06
35597108--35597132	13	1.9	13	100	0	50	56	0	4	40	1.18
35599172--35599355	67	2.8	64	81	8	221	29	17	29	23	1.97
35599148--35599355	67	3.2	64	80	10	197	31	17	28	22	1.96
35606376--35606436	31	2.0	31	87	3	88	32	11	24	31	1.91
35606937--35607337	45	8.8	45	88	1	543	25	17	30	26	1.97
35609072--35609107	19	1.9	18	88	5	54	22	22	41	13	1.89
35609094--35609137	24	1.9	22	81	9	52	11	29	34	25	1.91
35609478--35609528	24	2.1	24	96	0	93	43	5	17	33	1.73
35610937--35611003	34	2.0	34	82	5	82	31	19	20	28	1.97
35622146--35622368	40	5.6	40	86	3	236	24	21	27	26	1.99
35622221--35622403	79	2.3	80	82	1	226	25	20	27	25	1.99
35630417--35630631	119	1.8	119	89	0	340	32	19	17	30	1.95
35633785--35633818	17	2.0	16	88	11	50	76	17	2	2	1.04
35633786--35633819	6	5.7	6	85	0	50	79	14	2	2	0.97
35636551--35636632	42	1.9	42	80	7	94	35	26	14	23	1.93
35643394--35643699	27	11.3	27	83	1	326	38	20	9	30	1.85
35643676--35643928	27	9.4	27	83	0	299	28	21	8	41	1.82
35646630--35646775	44	3.4	42	74	12	102	34	24	18	21	1.96
35650395--35650558	42	3.9	42	79	3	177	29	14	23	32	1.93
35652390--35652458	34	2.0	34	83	5	86	14	26	17	42	1.87
35659465--35659585	64	1.9	64	86	3	172	28	22	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35662408--35662475	29	2.3	29	82	5	84	27	29	13	29	1.94
35662297--35662624	174	1.9	174	98	0	638	31	24	14	30	1.94
35662584--35662655	29	2.5	30	82	13	96	30	29	12	27	1.93
35681033--35681076	20	2.4	18	88	11	63	0	34	0	65	0.93
35681122--35681168	15	3.5	13	82	11	51	29	4	0	65	1.11
35681112--35681154	20	2.2	20	86	0	59	23	4	0	72	1.04
35692046--35692092	25	1.9	24	86	4	67	25	21	21	31	1.98
35694689--35694798	26	4.2	26	92	2	177	34	4	23	37	1.75
35698472--35698581	26	4.2	26	95	2	179	35	3	23	37	1.73
35699756--35699785	16	1.9	15	93	6	51	53	23	20	3	1.60
35700200--35700296	27	3.6	27	95	0	167	18	25	23	31	1.97
35700198--35700339	27	5.3	27	84	5	162	17	22	23	36	1.95
35703236--35703267	14	2.3	14	94	0	55	31	3	0	65	1.08
35704302--35704351	17	3.2	17	75	21	63	38	16	0	46	1.47
35704307--35704334	13	2.2	13	100	0	56	39	21	0	39	1.54
35706766--35707087	43	7.5	43	75	7	253	40	19	16	24	1.91
35706733--35707042	129	2.4	129	90	1	469	39	18	17	24	1.91
35706766--35707087	129	2.5	129	87	2	396	40	19	16	24	1.91
35711698--35711747	26	1.9	26	84	8	66	30	0	2	68	1.01
35712266--35712352	27	3.2	26	80	6	93	27	6	21	43	1.78
35712364--35712565	27	7.5	27	90	0	305	42	9	20	27	1.83
35712364--35712565	81	2.5	81	94	0	341	42	9	20	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35714048--35714127	38	2.1	38	97	0	151	35	13	8	42	1.76
35721597--35721621	13	1.9	13	100	0	50	72	0	16	12	1.13
35722639--35722666	6	4.7	6	100	0	56	17	17	14	50	1.79
35722798--35722857	18	3.3	18	72	9	59	43	11	16	28	1.83
35728723--35728900	27	6.6	27	85	3	214	26	14	28	30	1.95
35728724--35728879	82	1.9	81	89	3	242	26	14	28	30	1.95
35728720--35728900	82	2.2	81	84	2	238	27	14	27	30	1.95
35762387--35762464	39	2.0	39	92	0	129	21	10	30	37	1.87
35764242--35764974	47	15.6	47	90	0	1074	32	11	30	25	1.90
35764256--35764955	188	3.7	188	96	0	1247	32	11	31	25	1.91
35765093--35765172	37	2.2	37	86	4	108	23	17	31	27	1.97
35771538--35771714	27	6.6	27	83	5	196	27	15	27	29	1.96
35771539--35771693	81	1.9	81	88	5	233	27	15	27	29	1.96
35771535--35771714	81	2.2	81	83	3	229	27	15	27	30	1.96
35787207--35787369	39	4.2	39	91	0	236	27	28	20	23	1.99
35795328--35795475	39	3.8	39	90	1	217	29	29	20	20	1.98
35795328--35795475	77	1.9	78	87	1	217	29	29	20	20	1.98
35801986--35802175	40	4.8	40	91	2	294	24	28	23	23	2.00
35807485--35807511	13	2.1	13	100	0	54	37	14	7	40	1.74
35810106--35810189	15	5.7	15	81	6	91	8	16	17	57	1.63
35810099--35810188	30	3.0	30	79	7	103	8	17	16	56	1.65
35810738--35810935	94	2.1	94	98	0	378	32	12	23	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35817047--35817258	45	4.7	45	79	2	210	36	17	22	23	1.95
35817230--35817340	46	2.4	46	90	3	179	45	13	21	18	1.84
35817440--35817504	26	2.5	26	80	12	71	41	1	16	40	1.58
35817533--35817593	27	2.2	28	80	8	72	50	4	13	31	1.62
35819108--35819148	20	2.0	21	90	4	66	9	24	0	65	1.22
35819108--35819148	21	2.0	20	86	13	57	9	24	0	65	1.22
35820061--35820121	20	3.0	21	77	15	65	52	1	0	45	1.10
35823743--35823789	22	2.1	22	88	0	67	14	40	23	21	1.90
35826846--35826881	18	2.0	18	100	0	72	33	11	16	38	1.84
35835677--35835793	43	2.6	43	85	5	144	32	9	14	43	1.77
35836792--35836882	41	2.2	41	82	3	112	23	20	26	29	1.99
35840831--35840906	38	2.0	38	94	0	134	26	6	27	39	1.81
35841242--35841279	20	1.9	20	88	0	58	23	10	28	36	1.88
35848494--35848518	12	2.1	12	100	0	50	44	16	8	32	1.76
35856543--35856613	36	2.0	36	91	0	115	23	22	14	39	1.91
35861235--35861261	12	2.2	12	100	0	54	51	7	0	40	1.30
35861743--35861920	27	6.6	27	82	3	196	27	14	28	29	1.95
35861744--35861899	82	1.9	81	86	3	224	27	14	28	29	1.95
35861740--35861920	82	2.2	81	82	2	220	27	14	27	29	1.96
35869860--35870037	27	6.6	27	84	3	214	26	14	28	30	1.95
35869861--35870016	82	1.9	81	88	3	233	26	14	28	30	1.95
35869860--35870037	82	2.2	81	84	3	232	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35889079--35889115	18	2.1	18	100	0	74	45	27	5	21	1.73
35891016--35891239	39	5.6	39	84	6	238	25	28	21	25	1.99
35891016--35891239	79	2.8	79	82	6	247	25	28	21	25	1.99
35891016--35891239	40	5.7	40	85	7	246	25	28	21	25	1.99
35898939--35899142	40	5.1	40	78	8	139	25	26	21	26	1.99
35898986--35899089	39	2.6	40	86	4	140	25	26	19	27	1.99
35898925--35899142	79	2.8	80	76	11	191	25	26	21	27	1.99
35904318--35904360	19	2.3	19	95	0	77	20	27	18	32	1.96
35906314--35906356	8	5.4	8	88	0	50	46	23	16	13	1.83
35906598--35906729	29	4.6	29	88	0	194	25	15	30	28	1.96
35910252--35910277	11	2.4	11	100	0	52	26	0	19	53	1.45
35917726--35917771	19	2.5	19	82	6	60	73	8	0	17	1.07
35919300--35919340	16	2.6	16	88	0	55	51	0	0	48	1.00
35924775--35924820	20	2.3	20	88	7	67	41	0	0	58	0.98
35924777--35924820	19	2.2	20	88	4	63	40	0	0	59	0.98
35924786--35924829	19	2.2	19	88	8	61	47	0	2	50	1.13
35927415--35927475	17	3.4	17	70	12	59	50	14	3	31	1.59
35927406--35927497	37	2.5	36	89	3	139	47	14	5	32	1.66
35933024--35933102	28	2.7	30	80	9	83	62	5	2	30	1.30
35933063--35933114	15	3.4	15	76	10	52	65	7	0	26	1.20
35935830--35935912	33	2.5	33	92	0	139	24	45	4	25	1.72
35939374--35939432	30	2.0	30	86	6	84	1	25	0	72	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35939375--35939447	30	2.5	29	77	16	71	1	27	0	71	0.95
35939433--35939490	26	2.3	26	83	13	77	5	31	1	62	1.27
35939369--35939470	33	2.9	35	77	11	86	1	27	0	69	1.05
35940546--35940684	40	3.5	39	75	10	140	30	22	17	30	1.96
35942019--35942073	16	3.5	16	69	14	51	43	3	7	45	1.49
35949042--35949091	26	2.0	25	84	11	66	34	0	8	58	1.28
35957100--35957198	41	2.4	41	91	1	155	16	24	9	50	1.73
35959613--35959724	55	2.0	55	96	0	206	33	14	10	41	1.80
35965093--35965123	15	2.1	15	100	0	62	22	19	12	45	1.84
35968200--35968231	15	2.1	15	100	0	64	43	21	18	15	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356