genome.fa.s11.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  128  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40864848--40865024	55	3.2	55	89	0	246	31	29	12	26	1.93
40864848--40864999	27	5.6	27	92	3	232	30	28	13	27	1.94
40872392--40872424	14	2.4	14	90	10	50	39	0	0	60	0.97
40875711--40875998	96	3.0	96	87	2	382	26	17	27	28	1.97
40875725--40875990	48	5.6	47	79	5	275	26	16	27	28	1.97
40875725--40875990	144	1.8	144	84	4	367	26	16	27	28	1.97
40878720--40878839	3	38.7	3	71	17	77	35	2	0	61	1.09
40878705--40878837	25	5.2	25	71	13	103	35	3	0	61	1.11
40878783--40878842	29	2.1	29	90	6	95	35	3	0	61	1.12
40878868--40878942	11	6.1	12	73	23	59	34	2	1	61	1.18
40878983--40879035	26	2.0	28	85	7	74	32	1	1	64	1.15
40879285--40879331	18	2.5	19	75	3	51	31	2	0	65	1.04
40881770--40881983	46	4.6	45	77	12	152	24	28	19	28	1.98
40881770--40881986	94	2.3	92	81	9	237	24	28	19	28	1.98
40883382--40883437	28	2.0	28	82	0	67	28	26	26	17	1.98
40891401--40891574	46	3.7	47	79	8	187	27	21	29	21	1.99
40901860--40901929	25	2.8	25	95	0	122	24	24	25	25	2.00
40902132--40902373	27	9.0	27	81	5	274	25	21	17	35	1.95
40902133--40902373	54	4.5	53	84	3	302	25	21	17	35	1.95
40902134--40902378	81	3.0	81	82	4	305	26	20	17	35	1.94
40902366--40902544	27	6.7	26	75	8	137	28	7	21	42	1.80
40902394--40902544	81	1.9	81	82	8	191	28	7	21	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40902316--40902558	54	4.5	54	74	9	174	28	10	20	40	1.85
40902537--40902809	27	9.7	27	84	7	321	41	8	22	28	1.82
40902509--40902775	81	3.2	81	80	11	275	40	7	22	29	1.82
40902633--40902706	37	2.0	37	97	0	139	44	5	25	24	1.75
40902579--40902760	91	2.0	91	95	0	328	42	7	23	26	1.80
40902552--40902787	118	2.0	118	94	0	409	42	8	22	26	1.81
40904990--40905165	46	3.8	44	79	15	171	26	21	30	21	1.98
40905180--40905306	50	2.6	49	86	6	159	28	19	29	22	1.98
40915903--40916068	47	3.6	47	74	11	178	24	18	27	30	1.98
40915853--40916122	46	5.8	46	71	15	180	23	18	26	31	1.97
40915856--40916115	93	2.8	93	85	2	353	23	18	26	30	1.98
40919060--40919119	15	4.0	15	75	0	66	11	11	16	60	1.60
40919061--40919120	30	2.0	30	90	0	93	11	13	16	58	1.63
40921836--40922102	46	5.8	46	72	11	213	23	19	26	29	1.98
40921831--40922095	93	2.8	93	89	1	379	23	19	26	29	1.98
40921880--40922049	47	3.6	47	72	7	166	23	19	27	30	1.98
40924098--40924160	3	21.0	3	74	6	56	61	6	4	26	1.40
40924098--40924158	21	2.9	21	80	4	70	62	6	4	26	1.40
40925546--40925584	19	2.1	19	85	9	53	7	0	15	76	0.99
40926510--40926595	23	3.8	22	80	7	84	26	22	19	31	1.98
40926519--40926598	23	3.5	22	85	8	90	26	21	18	33	1.96
40931535--40931572	19	2.0	19	94	0	67	31	10	23	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40933794--40934014	40	5.7	40	85	9	271	25	21	27	25	1.99
40933832--40934047	80	2.8	79	82	7	219	27	20	26	25	1.99
40954917--40954991	38	2.0	38	86	5	107	30	18	26	24	1.98
40955045--40955266	40	5.6	40	92	0	365	24	22	27	25	1.99
40955251--40955282	16	2.0	16	100	0	64	25	31	25	18	1.98
40955267--40955368	40	2.5	40	88	0	150	23	22	28	25	1.99
40955171--40955350	96	1.9	96	94	0	315	23	22	26	27	2.00
40955267--40955381	40	2.9	40	86	0	149	23	21	28	26	1.99
40958057--40958115	25	2.4	25	97	0	109	22	6	28	42	1.79
40960061--40960135	38	2.0	38	86	5	107	30	18	26	24	1.98
40960189--40960409	40	5.6	40	90	1	347	24	21	28	26	1.99
40960395--40960425	16	1.9	16	100	0	62	25	25	25	22	2.00
40960415--40960511	40	2.4	40	87	0	140	23	20	27	27	1.99
40960315--40960493	96	1.9	96	91	0	295	24	20	26	29	1.99
40960415--40960524	40	2.8	40	85	0	139	23	20	28	28	1.99
40971870--40971909	19	2.0	20	86	13	57	77	2	5	15	1.04
40972151--40972195	8	5.5	8	82	15	56	8	6	0	84	0.78
40977387--40977589	43	4.7	43	92	1	309	34	26	15	23	1.94
40977329--40977589	86	3.0	86	85	4	301	34	25	14	25	1.94
40979798--40979846	21	2.3	21	96	0	89	32	16	4	46	1.65
40980526--40980559	13	2.5	13	90	9	50	35	2	14	47	1.60
40981862--40982107	40	6.2	40	92	2	406	22	23	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40985547--40985938	40	9.8	40	86	3	520	27	28	20	23	1.99
40985531--40985934	120	3.4	120	94	0	655	27	28	20	23	1.99
40992626--40992704	37	2.1	37	90	0	122	25	31	18	24	1.98
40992823--40993562	47	15.4	47	89	4	1039	29	27	8	33	1.87
40992882--40993562	147	4.7	145	94	1	1118	30	27	8	33	1.87
40996571--40996604	13	2.5	13	90	9	50	35	2	14	47	1.60
40997908--40998193	40	7.2	40	93	2	468	23	22	27	26	1.99
41000411--41000551	57	2.4	58	83	3	169	31	23	15	29	1.95
41002247--41002403	37	4.3	37	82	4	174	42	13	14	29	1.84
41005003--41005054	27	1.9	27	88	0	77	34	19	21	25	1.96
41005171--41005574	201	2.0	201	86	5	568	27	22	13	35	1.92
41010734--41010865	47	2.8	48	89	1	194	34	26	15	23	1.95
41027083--41027129	21	2.2	21	85	7	60	51	2	0	46	1.13
41040304--41040345	14	2.8	16	82	10	52	23	0	4	71	1.05
41043313--41043574	48	5.6	46	82	11	282	27	20	28	23	1.99
41043313--41043678	94	3.9	94	83	8	413	29	19	27	24	1.98
41049386--41049449	31	2.1	31	82	2	76	34	10	23	31	1.89
41052159--41052335	49	3.7	49	81	8	193	28	20	27	23	1.99
41058133--41058172	13	3.1	13	92	0	62	72	0	27	0	0.85
41062343--41062410	30	2.3	30	92	0	109	26	22	27	23	1.99
41063517--41063563	24	2.0	24	100	0	94	21	8	40	29	1.83
41068279--41068500	67	3.4	65	74	12	202	23	28	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41068402--41068528	68	1.9	68	81	6	159	24	29	14	31	1.95
41070820--41070992	45	3.9	45	83	6	201	25	28	22	23	1.99
41070985--41071232	38	6.5	38	89	0	370	32	26	21	19	1.97
41071529--41071663	43	3.1	44	83	6	184	28	29	17	24	1.97
41076210--41076433	39	5.7	39	93	0	367	21	21	26	30	1.98
41081620--41081697	40	2.0	40	84	5	104	20	15	33	30	1.94
41085688--41085865	27	6.6	27	84	3	205	29	28	15	26	1.96
41085709--41085864	82	1.9	81	88	3	233	29	28	15	26	1.96
41101538--41101587	11	4.7	11	82	9	68	30	32	0	38	1.58
41101530--41101587	20	2.7	21	84	10	73	31	29	0	39	1.57
41103388--41103430	18	2.4	18	88	7	61	16	25	11	46	1.80
41103815--41104428	116	5.3	116	95	1	1070	40	3	8	47	1.52
41107450--41107987	126	4.3	126	91	1	837	26	21	18	33	1.96
41107450--41107995	251	2.2	252	89	1	835	27	21	18	33	1.96
41108104--41108278	95	1.8	98	83	6	241	40	14	1	44	1.55
41108275--41108316	16	2.6	17	85	11	61	54	26	0	19	1.44
41116541--41116709	48	3.6	48	75	3	146	28	21	26	23	1.99
41116633--41116805	49	3.5	48	75	9	138	31	20	26	21	1.98
41124347--41124519	94	1.8	94	90	2	276	30	16	30	23	1.96
41124354--41124520	48	3.5	46	76	11	169	30	16	29	23	1.96
41125619--41125693	21	3.5	21	75	3	69	38	25	20	16	1.92
41125619--41125705	23	4.0	23	72	17	67	37	24	20	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41127634--41127810	49	3.6	49	79	8	157	27	18	28	25	1.98
41129044--41129379	169	2.0	169	98	0	654	28	14	18	38	1.90
41135048--41135131	26	3.3	26	70	9	75	33	7	29	29	1.84
41136526--41136555	16	1.9	16	93	6	53	30	6	10	53	1.60
41136822--41136846	13	1.9	13	100	0	50	48	4	0	48	1.20
41137592--41137619	3	9.3	3	100	0	56	67	0	32	0	0.91
41140934--41140981	23	2.1	23	100	0	96	54	25	0	20	1.45
41142485--41142575	24	3.8	24	89	0	128	34	28	14	23	1.93
41142921--41142946	10	2.6	10	100	0	52	7	0	0	92	0.39
41143035--41143061	10	2.7	10	100	0	54	40	0	7	51	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356