Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  102  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32196391--32196428
19
2.0
19
100
0
76
21
26
26
26
1.99
32200735--32200766
14
2.3
14
94
0
55
34
34
9
21
1.86
32208755--32208798
19
2.3
19
88
0
61
61
27
0
11
1.30
32208872--32209267
212
1.9
212
91
1
650
55
20
5
18
1.62
32211652--32211718
30
2.2
30
94
0
116
55
5
5
32
1.49
32213876--32213912
9
4.1
9
89
0
56
27
10
13
48
1.75
32213876--32213912
18
2.1
18
94
0
65
27
10
13
48
1.75
32213953--32213998
9
5.0
9
89
2
56
30
15
15
39
1.88
32218393--32218418
13
2.0
13
100
0
52
15
38
30
15
1.88
32225563--32225632
27
2.5
30
84
9
85
30
22
17
30
1.97
32226171--32226275
38
2.8
38
80
2
122
21
21
21
34
1.97
32228778--32228812
18
1.9
18
88
0
52
40
17
25
17
1.90
32228796--32228902
45
2.4
45
85
6
146
41
17
18
22
1.91
32230499--32230538
20
2.0
20
90
9
64
55
5
0
40
1.22
32230514--32230547
17
2.0
17
88
11
52
55
2
0
41
1.15
32231246--32231409
46
3.5
46
80
9
158
23
29
19
26
1.98
32234905--32234942
20
1.9
19
89
5
58
44
5
10
39
1.61
32242515--32242546
13
2.3
15
89
10
50
40
0
12
46
1.42
32242913--32242966
19
2.6
21
77
17
58
31
0
12
55
1.38
32243074--32243119
24
1.9
24
81
0
56
28
21
26
23
1.99
32243813--32243864
21
2.5
20
75
6
50
30
13
25
30
1.94
32259452--32259498
19
2.4
20
82
13
62
63
4
6
25
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32259595--32259635
21
2.0
21
85
9
57
26
4
0
68
1.10
32259748--32259789
21
2.0
20
86
13
59
23
2
4
69
1.20
32259749--32259789
22
1.9
22
90
5
66
24
2
4
68
1.22
32260203--32260248
22
2.1
22
84
8
58
52
0
0
47
1.00
32260201--32260250
21
2.3
21
77
12
57
52
0
0
48
1.00
32260205--32260289
8
11.8
8
67
18
53
54
0
0
45
1.00
32260208--32260283
15
4.9
15
74
13
64
55
0
0
44
0.99
32267358--32267382
7
3.6
7
100
0
50
16
12
0
72
1.13
32268346--32268385
14
2.9
14
92
7
64
55
0
2
42
1.13
32268678--32268734
28
2.0
28
81
18
66
49
7
3
40
1.47
32277893--32277929
16
2.3
16
85
0
56
40
5
29
24
1.77
32277910--32277999
44
2.0
46
91
4
148
27
4
28
38
1.76
32277910--32278015
46
2.5
44
83
11
132
30
3
29
36
1.75
32278158--32278313
17
10.5
15
65
30
61
54
2
1
41
1.22
32278163--32278196
17
2.0
17
100
0
68
58
0
0
41
0.98
32278280--32278313
17
2.0
17
100
0
68
58
0
0
41
0.98
32278254--32278443
43
4.7
43
67
22
151
53
2
2
42
1.27
32278143--32278546
117
3.5
117
94
0
702
51
3
1
42
1.31
32278392--32278430
17
2.5
15
84
15
60
61
0
0
38
0.96
32278397--32278430
17
2.0
17
100
0
68
58
0
0
41
0.98
32278463--32278502
20
2.0
21
85
5
55
60
5
0
35
1.19
32278474--32278591
38
3.1
39
67
21
104
52
4
0
43
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32278522--32278611
23
3.9
22
72
18
67
53
5
0
41
1.24
32278562--32278625
32
2.0
32
81
0
74
48
3
0
48
1.17
32281022--32281067
20
2.2
20
88
3
65
21
2
13
63
1.40
32281034--32281067
10
3.4
10
100
0
68
20
0
17
61
1.34
32281053--32281111
29
2.0
29
100
0
118
27
10
10
52
1.67
32289273--32289320
6
7.5
6
88
11
69
79
0
2
18
0.84
32289269--32289320
7
7.9
7
89
4
56
78
0
1
19
0.84
32301308--32301335
14
2.0
14
100
0
56
35
0
0
64
0.94
32308197--32308235
17
2.3
17
86
0
51
74
10
5
10
1.21
32309437--32309479
13
3.4
12
83
6
50
51
0
0
48
1.00
32310151--32310264
57
2.0
57
100
0
228
19
7
29
43
1.77
32313697--32313731
17
2.1
17
94
0
61
14
11
45
28
1.79
32330567--32330608
16
2.6
16
85
11
50
38
4
2
54
1.34
32331481--32331509
3
9.7
3
100
0
58
31
0
0
68
0.89
32342466--32342504
20
2.1
18
85
9
51
43
15
2
38
1.60
32343422--32343451
12
2.5
12
94
0
51
6
43
26
23
1.78
32346231--32346292
31
2.0
31
100
0
124
32
25
12
29
1.93
32346877--32346951
33
2.3
32
80
10
82
42
9
6
41
1.63
32347279--32347304
2
13.0
2
100
0
52
50
0
0
50
1.00
32348297--32348340
21
2.1
21
86
0
61
25
15
9
50
1.74
32349173--32349236
31
2.1
31
93
0
110
25
32
10
31
1.90
32351082--32351110
5
6.0
5
92
8
51
79
0
0
20
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32353380--32353411
5
6.6
5
92
7
57
81
0
0
18
0.70
32353381--32353411
9
3.3
9
95
4
53
80
0
0
19
0.71
32357736--32357767
5
6.6
5
92
7
57
81
0
0
18
0.70
32357737--32357767
9
3.3
9
95
4
53
80
0
0
19
0.71
32359638--32359676
16
2.5
15
84
8
51
56
0
0
43
0.99
32361527--32361751
40
5.6
40
82
2
263
24
26
24
25
2.00
32361491--32361751
80
3.3
80
81
3
285
24
26
24
25
2.00
32361527--32361751
120
1.9
121
83
4
294
24
26
24
25
2.00
32366079--32366136
28
2.1
28
96
0
107
32
24
8
34
1.86
32382754--32382926
46
3.7
46
78
13
210
21
21
27
28
1.99
32382751--32382921
93
1.8
93
96
0
315
21
21
28
28
1.99
32384777--32384925
57
2.6
57
77
10
160
28
20
20
29
1.98
32386926--32387065
39
3.6
39
90
0
208
12
23
25
39
1.89
32392113--32392385
130
2.1
130
80
4
300
23
23
13
38
1.91
32400483--32400537
25
2.2
26
78
21
64
54
0
5
40
1.23
32405239--32405307
35
2.0
35
97
0
129
28
37
5
27
1.80
32414333--32414440
22
4.9
22
80
4
119
28
22
24
25
1.99
32414347--32414440
45
2.1
44
84
2
116
30
20
24
24
1.98
32417130--32417273
50
2.9
50
87
0
198
26
26
21
25
2.00
32420505--32420807
47
6.5
46
74
9
217
24
29
19
26
1.99
32420499--32420807
95
3.3
94
81
9
316
23
29
20
26
1.99
32420505--32420807
142
2.2
142
79
6
314
24
29
19
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32423440--32423581
50
2.9
50
86
2
189
28
23
20
27
1.99
32428836--32428870
18
2.1
17
89
10
54
34
0
5
60
1.21
32428907--32428945
19
2.1
19
85
9
53
23
5
5
66
1.32
32429018--32429056
18
2.2
17
90
4
60
58
0
2
38
1.12
32429018--32429068
18
2.9
17
82
5
57
50
0
3
45
1.20
32439344--32439429
31
2.8
32
81
10
97
67
2
2
27
1.15
32443268--32443334
34
1.9
35
87
3
100
32
5
11
49
1.64
32444199--32445322
495
2.3
493
96
0
2045
43
14
6
35
1.72
32445576--32445718
41
3.5
41
84
0
189
27
27
19
25
1.99
32445708--32445786
41
1.9
41
89
0
122
20
24
22
32
1.97
32453536--32453854
172
1.8
173
85
2
453
36
10
10
42
1.74
32453498--32453904
172
2.4
173
80
5
452
36
10
10
42
1.73
32457240--32457277
11
3.5
11
89
7
60
47
0
0
52
1.00
32457243--32457279
10
3.7
10
96
0
65
48
0
0
51
1.00
32465233--32465272
21
2.0
20
85
5
53
42
20
0
37
1.52
32471190--32471456
40
6.7
40
97
0
480
22
27
20
29
1.98
32486880--32487089
98
2.1
99
88
1
314
41
21
10
25
1.86
32486880--32487089
50
4.2
50
90
2
316
41
21
10
25
1.86
32491768--32491854
40
2.2
40
85
4
113
32
27
17
22
1.96
32492263--32492301
8
4.9
8
100
0
78
38
10
0
51
1.36
32493181--32493218
14
2.9
13
81
11
51
57
10
13
18
1.63
32495703--32495736
6
5.5
6
86
6
50
82
0
2
14
0.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32495703--32495736
13
2.7
13
90
4
52
82
0
2
14
0.79
32502331--32502360
15
1.9
16
93
6
53
53
6
20
20
1.67
32505825--32505883
31
1.9
31
83
13
77
33
18
1
45
1.60
32506763--32506802
21
2.0
20
90
5
62
42
17
0
40
1.49
32508405--32508452
24
2.0
24
100
0
96
50
25
0
25
1.50
32511306--32511336
16
1.9
16
93
0
53
41
19
29
9
1.83
32511556--32511639
30
2.9
29
87
3
123
28
13
28
29
1.94
32511552--32511671
29
4.2
29
80
4
127
29
11
27
31
1.92
32515270--32515426
55
2.9
54
81
11
178
14
28
30
26
1.95
32518751--32518918
84
2.0
84
100
0
336
34
22
5
36
1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356