genome.fa.s11.2.7.7.80.10.50.1000.296.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  296  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96394666--96394834	45	3.8	45	91	0	266	21	14	17	46	1.83
96397154--96397196	21	2.0	21	100	0	86	23	11	23	41	1.87
96397406--96397445	20	2.0	20	95	0	71	72	2	5	20	1.15
96397460--96397497	13	2.8	13	88	4	58	44	15	0	39	1.47
96397630--96397665	17	2.0	19	89	10	58	19	25	5	50	1.69
96400880--96400958	37	2.1	37	90	0	122	25	31	18	24	1.98
96401077--96401278	47	4.3	47	91	2	314	28	30	8	32	1.88
96401077--96401278	96	2.1	95	91	1	325	28	30	8	32	1.88
96408391--96408518	28	4.5	28	88	2	175	28	12	25	32	1.92
96408391--96408518	57	2.2	57	88	2	186	28	12	25	32	1.92
96410162--96410230	32	2.2	32	91	0	111	53	17	5	23	1.65
96410298--96410331	7	4.9	7	100	0	68	0	11	0	88	0.52
96410351--96410530	96	1.9	97	86	1	263	30	23	16	29	1.96
96412743--96412995	68	3.9	64	77	9	217	30	16	27	24	1.97
96416358--96416500	75	1.9	75	85	0	196	26	11	31	30	1.92
96422956--96423005	10	5.0	10	83	9	66	70	2	6	22	1.20
96435520--96435585	18	3.7	18	71	17	66	66	6	3	24	1.28
96439282--96439469	40	4.7	40	70	11	116	37	25	18	18	1.93
96439269--96439590	120	2.7	120	80	4	319	36	25	16	21	1.94
96439371--96439594	80	2.8	79	72	5	198	37	25	16	21	1.93
96439366--96439594	40	5.7	39	75	6	156	36	25	15	21	1.93
96446197--96446275	37	2.1	37	86	4	106	26	30	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96446394--96446851	47	9.6	47	90	3	700	28	30	8	31	1.88
96446394--96446851	145	3.2	145	93	1	762	28	30	8	31	1.88
96458149--96458189	21	2.0	21	85	9	57	36	4	7	51	1.51
96459527--96459591	31	2.1	30	83	13	80	58	3	0	38	1.14
96459610--96459663	26	2.1	25	82	3	63	66	1	1	29	1.12
96459609--96459663	25	2.2	25	77	6	58	65	1	1	30	1.13
96459934--96459992	27	2.1	29	81	12	70	28	5	1	64	1.24
96460010--96460059	6	7.7	6	79	16	55	24	0	0	76	0.80
96460013--96460080	28	2.2	32	90	10	108	29	0	0	70	0.87
96460014--96460102	28	3.0	29	87	8	101	32	0	1	66	0.99
96468988--96470216	410	3.0	410	97	0	2356	41	9	16	32	1.80
96470189--96470233	20	2.2	20	88	0	63	48	2	11	37	1.51
96477824--96477882	31	1.9	31	82	6	75	27	22	3	47	1.67
96481022--96481109	27	3.2	27	76	7	88	21	18	18	42	1.90
96481936--96481960	7	3.6	7	100	0	50	72	0	28	0	0.86
96485754--96485793	19	2.0	20	85	4	55	35	15	12	37	1.85
96493917--96494058	43	3.3	43	90	2	214	25	17	27	29	1.97
96514279--96514333	21	2.6	21	76	0	65	30	38	7	23	1.82
96520174--96520209	16	2.2	16	90	9	56	41	25	0	33	1.55
96521448--96521600	51	3.0	51	94	0	261	29	9	26	33	1.89
96524625--96524989	182	2.0	182	98	0	712	29	26	7	37	1.83
96525501--96525545	23	2.0	23	91	4	74	26	13	17	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96525527--96525594	32	2.1	33	78	13	79	26	8	22	42	1.82
96525621--96525655	16	2.2	16	89	0	52	28	0	28	42	1.56
96536152--96536189	18	2.2	18	95	4	69	34	0	31	34	1.58
96537338--96537384	23	2.0	23	95	0	85	36	17	10	36	1.84
96539594--96539714	40	3.0	40	90	0	197	28	28	21	21	1.99
96547438--96547631	96	2.0	96	95	0	352	26	22	20	31	1.98
96554880--96555047	43	4.0	41	75	10	142	34	23	13	28	1.93
96556666--96556747	30	2.6	33	78	11	98	35	21	12	30	1.90
96560770--96560870	50	2.0	50	100	0	202	36	25	11	25	1.90
96563195--96563227	13	2.4	14	90	5	50	63	12	0	24	1.28
96564274--96564511	56	4.2	56	90	1	352	35	23	13	28	1.92
96569994--96570090	43	2.3	43	90	3	151	31	21	25	20	1.98
96573694--96573743	26	1.9	26	95	0	91	42	24	20	14	1.88
96573697--96573753	26	2.2	26	87	0	78	45	22	19	12	1.83
96573767--96573843	27	2.9	27	80	7	86	36	16	22	24	1.94
96579609--96579636	13	2.2	13	100	0	56	39	14	14	32	1.86
96584835--96584917	21	3.9	21	77	3	67	36	26	22	14	1.93
96584833--96584907	21	3.4	23	78	12	86	37	26	22	13	1.91
96585284--96585340	15	3.9	15	90	2	89	50	10	0	38	1.37
96586612--96586648	5	7.4	5	100	0	74	59	0	0	40	0.97
96586671--96586699	8	3.6	8	100	0	58	62	0	0	37	0.96
96589210--96589249	19	2.1	19	100	0	80	35	15	10	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96595260--96595394	20	7.2	18	70	15	78	63	2	2	31	1.21
96595260--96595350	8	9.9	9	71	20	55	67	1	2	29	1.10
96595265--96595394	47	2.8	46	78	13	131	62	2	3	32	1.23
96602787--96602828	21	2.1	21	82	8	52	52	30	2	14	1.54
96604165--96604259	42	2.2	42	83	5	120	32	21	16	29	1.95
96604161--96604266	43	2.5	43	78	9	119	34	20	15	29	1.93
96606494--96606551	28	2.1	28	83	6	73	43	0	18	37	1.51
96606743--96606795	15	3.5	15	72	10	54	39	7	9	43	1.65
96606738--96606800	30	2.1	30	93	0	108	39	6	9	44	1.62
96607360--96607405	23	2.0	23	95	0	83	41	13	6	39	1.70
96610096--96610172	13	5.9	13	75	6	66	37	7	19	35	1.81
96610098--96610174	39	2.0	39	84	5	102	38	7	18	35	1.79
96619787--96619835	23	2.2	21	85	7	62	71	2	0	26	0.97
96621314--96621361	23	2.1	23	100	0	96	27	16	12	43	1.84
96621739--96621799	31	2.0	31	87	6	88	34	13	13	39	1.83
96622848--96623019	92	1.8	95	82	5	224	28	18	9	43	1.81
96623100--96623140	21	2.0	21	90	0	64	26	29	19	24	1.98
96623174--96623242	31	2.3	31	85	7	88	21	8	20	49	1.76
96624340--96624418	23	3.3	22	67	23	61	40	16	12	30	1.86
96624335--96624432	49	2.0	49	97	0	187	38	19	10	31	1.85
96624736--96624787	23	2.3	21	81	18	61	65	0	5	28	1.16
96624742--96624824	19	4.6	18	71	24	59	63	1	6	28	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96624791--96624848	27	2.2	25	85	11	73	65	3	6	24	1.33
96624795--96624848	25	2.2	24	81	15	65	64	3	7	24	1.35
96624758--96624832	33	2.2	35	81	11	93	66	2	4	26	1.22
96671078--96671138	18	3.3	19	78	15	65	40	3	1	54	1.27
96671078--96671133	20	2.9	20	82	15	57	44	3	1	50	1.29
96675631--96675659	14	2.1	14	93	6	51	48	24	0	27	1.51
96676612--96676652	20	2.0	21	85	4	57	29	2	7	60	1.36
96686000--96686027	11	2.5	11	100	0	56	78	7	0	14	0.95
96691499--96691546	22	2.2	22	96	3	89	41	10	8	39	1.69
96692907--96692954	17	2.7	18	84	12	64	27	10	0	62	1.27
96692907--96693021	19	6.0	18	74	17	76	33	7	0	58	1.33
96692945--96693000	21	2.7	21	80	5	69	37	5	0	57	1.22
96692990--96693052	29	2.2	29	83	13	78	30	4	3	61	1.32
96695822--96695875	26	2.1	25	83	10	65	48	1	3	46	1.30
96696157--96696207	23	2.2	23	83	13	61	37	3	1	56	1.29
96697645--96697707	27	2.3	27	76	10	67	52	1	3	42	1.27
96699615--96699673	29	2.0	30	83	12	77	37	0	40	22	1.54
96699810--96699849	20	1.9	21	85	10	55	47	0	27	25	1.52
96699887--96699914	9	3.1	9	100	0	56	32	10	10	46	1.73
96700577--96700602	11	2.4	11	100	0	52	50	7	15	26	1.71
96704825--96705020	69	2.6	76	86	12	300	23	22	27	25	2.00
96704825--96705056	39	6.2	40	84	13	314	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96712873--96713153	40	7.1	40	90	4	421	23	22	27	25	2.00
96721932--96721965	18	1.9	17	94	5	59	26	8	0	64	1.22
96723399--96723462	27	2.4	26	82	7	74	21	21	18	37	1.94
96725501--96725560	31	1.9	31	96	0	111	23	16	21	38	1.93
96725683--96725716	13	2.6	13	90	0	50	47	0	20	32	1.51
96727905--96728011	42	2.5	42	74	5	101	27	15	25	31	1.96
96730896--96730938	21	2.0	22	86	13	63	44	0	13	41	1.44
96730896--96730939	20	2.1	21	84	12	56	45	0	13	40	1.44
96730933--96731089	63	2.5	62	83	11	194	31	10	16	41	1.82
96731272--96731473	41	4.9	41	94	0	332	29	20	27	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356