Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  321  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103903567--103903608
18
2.4
18
80
11
52
26
14
14
45
1.83
103903677--103904049
139
2.7
138
81
6
410
28
25
10
35
1.90
103907802--103908091
42
6.7
42
84
7
330
27
15
6
50
1.68
103907802--103908091
133
2.2
126
84
5
366
27
15
6
50
1.68
103907802--103908091
84
3.4
84
84
6
364
27
15
6
50
1.68
103913421--103913456
14
2.6
14
91
8
56
58
5
5
30
1.44
103913745--103913822
38
2.0
39
83
11
99
51
1
2
44
1.23
103914163--103914189
7
3.9
7
100
0
54
44
25
14
14
1.84
103924220--103924328
6
18.2
6
98
0
209
48
17
0
33
1.54
103925198--103925265
27
2.5
27
87
0
91
16
30
36
16
1.90
103925550--103926399
152
5.7
150
88
5
1205
29
6
7
56
1.52
103925550--103926399
302
2.9
299
89
4
1237
29
6
7
56
1.52
103926527--103926597
27
2.6
27
88
0
97
21
36
25
16
1.94
103926616--103926656
18
2.4
17
84
8
55
9
4
4
80
1.00
103926623--103926658
18
2.0
18
94
0
63
11
8
5
75
1.19
103936181--103936205
12
2.1
12
100
0
50
8
8
20
64
1.46
103937173--103937241
22
3.0
24
68
23
76
40
10
4
44
1.58
103937576--103937615
21
1.9
21
90
10
64
42
0
0
57
0.98
103937874--103937911
13
2.9
13
92
0
67
39
26
7
26
1.83
103942635--103942680
16
2.8
17
83
3
58
58
2
2
36
1.22
103942669--103942755
40
2.2
40
85
2
111
49
9
8
33
1.64
103946723--103946755
16
2.1
16
100
0
66
39
18
12
30
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103947728--103947766
19
2.1
19
90
9
62
48
17
0
33
1.48
103951450--103951516
35
1.9
35
85
11
93
32
8
20
37
1.84
103953290--103953377
46
1.9
46
90
0
140
27
30
7
34
1.85
103953351--103953448
47
2.1
47
82
3
117
27
29
10
32
1.90
103959664--103959703
10
4.0
10
81
12
55
22
7
2
67
1.28
103961535--103961583
20
2.4
21
80
19
59
36
4
8
51
1.51
103973178--103973247
25
2.8
25
88
0
113
20
18
24
37
1.94
103991615--103991695
31
2.7
30
83
5
110
34
6
13
45
1.69
103991615--103991696
30
2.7
31
83
3
105
34
6
13
46
1.68
104001023--104001068
23
2.0
23
100
0
92
13
17
17
52
1.75
104005534--104005585
4
13.0
4
100
0
104
25
0
25
50
1.50
104010019--104010100
40
2.0
41
90
4
130
42
17
7
32
1.76
104015216--104015253
14
2.6
15
84
16
53
60
7
0
31
1.25
104022880--104022909
13
2.3
13
100
0
60
20
6
13
60
1.55
104023786--104024035
78
3.1
81
62
16
187
46
3
3
46
1.37
104023789--104024098
157
2.0
157
94
0
539
47
4
3
44
1.40
104024228--104024295
16
4.2
16
90
0
109
38
32
0
29
1.58
104027111--104027151
19
2.3
19
87
8
59
39
4
2
53
1.35
104027570--104027619
20
2.5
20
84
9
59
34
4
4
58
1.36
104028207--104028235
3
9.7
3
100
0
58
0
0
31
68
0.89
104035169--104035229
29
2.1
30
84
9
81
47
8
4
39
1.55
104039860--104039966
54
2.0
54
81
7
128
23
21
34
20
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104040165--104040200
15
2.4
15
100
0
72
36
5
33
25
1.79
104041062--104041098
19
2.0
19
89
5
58
37
0
5
56
1.22
104041053--104041138
20
4.2
20
79
10
86
40
2
3
53
1.31
104048966--104049021
6
9.3
6
88
0
85
16
32
46
5
1.69
104050118--104050165
11
4.7
10
82
10
53
60
0
37
2
1.09
104050592--104050626
18
2.0
17
94
5
61
57
0
0
42
0.99
104056760--104056805
21
2.4
18
85
10
56
34
2
26
36
1.69
104057531--104057569
18
2.2
17
86
4
51
33
2
2
61
1.23
104058439--104058518
34
2.4
34
82
4
90
45
6
12
36
1.67
104069920--104070112
63
3.1
61
77
5
197
20
27
21
31
1.98
104075963--104076010
10
4.5
10
77
12
51
12
10
0
77
1.00
104077053--104077084
16
2.0
16
100
0
64
25
12
18
43
1.85
104095324--104095384
31
2.0
31
90
0
95
37
16
8
37
1.78
104100114--104100153
18
2.3
17
95
4
71
15
20
25
40
1.90
104106946--104106978
6
5.5
6
92
0
57
18
27
0
54
1.44
104110595--104110638
23
1.9
23
90
0
70
27
6
4
61
1.41
104110618--104110688
16
4.7
15
71
16
58
30
1
4
63
1.22
104110798--104110834
18
2.0
19
89
5
58
56
0
0
43
0.99
104116068--104116151
33
2.5
33
80
3
89
22
8
48
20
1.76
104118033--104118075
16
2.7
16
92
0
68
53
4
0
41
1.21
104118066--104118316
96
2.5
102
82
11
306
52
15
1
29
1.53
104118076--104118349
106
2.7
96
82
9
311
52
16
1
29
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104118392--104118504
34
3.2
34
70
14
111
53
13
0
32
1.39
104118399--104118521
41
3.2
41
62
25
97
53
14
0
31
1.41
104118365--104118513
72
2.0
74
93
2
257
55
14
0
30
1.40
104118527--104118644
59
2.0
60
91
1
193
53
11
0
33
1.44
104119143--104119195
24
2.2
24
86
6
72
64
1
1
32
1.15
104119504--104119537
7
4.9
7
100
0
68
44
29
0
26
1.55
104121840--104121885
23
2.0
23
100
0
92
43
4
21
30
1.72
104126637--104126669
5
6.6
5
100
0
66
39
0
0
60
0.97
104130800--104130824
5
5.0
5
100
0
50
20
0
20
60
1.37
104131541--104131585
24
2.0
22
82
8
54
62
6
2
28
1.33
104136455--104136500
23
1.9
24
86
8
67
28
0
4
67
1.10
104144116--104144152
18
2.1
18
100
0
74
43
0
35
21
1.53
104145156--104145341
73
2.5
73
98
0
354
27
6
24
40
1.80
104148302--104148341
21
1.9
21
84
0
53
27
15
27
30
1.96
104149882--104149906
13
1.9
13
100
0
50
4
32
56
8
1.47
104150637--104150722
3
28.7
3
70
9
50
30
2
5
61
1.32
104150629--104150691
24
2.6
23
85
9
74
28
3
3
65
1.24
104150689--104150730
21
2.0
21
85
0
57
33
4
7
54
1.49
104150891--104150961
25
2.8
25
82
14
76
35
5
1
57
1.31
104150896--104151035
50
2.8
49
77
5
140
34
10
2
52
1.51
104151552--104151605
22
2.5
22
75
0
54
29
7
3
59
1.42
104151820--104151850
15
2.1
15
93
0
53
32
3
0
64
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104151888--104151914
14
1.9
14
100
0
54
25
0
0
74
0.83
104153565--104153619
18
2.9
18
78
7
65
67
3
0
29
1.08
104153573--104153617
20
2.4
19
79
13
58
68
4
0
26
1.08
104153564--104153625
19
3.2
20
76
15
67
67
3
0
29
1.06
104154103--104154167
32
2.0
32
90
0
103
36
13
12
36
1.83
104155050--104155102
9
6.0
9
80
10
65
32
0
1
66
1.03
104155153--104155219
24
2.7
26
79
11
68
34
0
5
59
1.22
104155681--104155709
12
2.3
13
94
5
51
17
3
0
79
0.87
104155761--104155816
21
2.6
21
86
8
69
32
7
3
57
1.43
104155991--104156026
16
2.3
15
86
9
54
33
0
11
55
1.35
104161492--104161537
20
2.3
20
85
7
58
39
19
8
32
1.82
104163267--104163300
5
6.8
5
89
0
50
82
2
14
0
0.79
104163964--104164260
3
99.3
3
66
9
79
29
8
2
59
1.41
104163943--104163999
26
2.2
27
78
9
64
29
7
0
63
1.21
104163964--104164000
14
2.6
14
91
4
56
29
2
0
67
1.04
104164473--104164509
6
6.5
6
84
12
51
29
13
0
56
1.37
104164491--104164548
30
1.9
30
86
6
82
27
10
0
62
1.28
104182109--104182145
14
2.6
15
83
12
51
72
0
0
27
0.84
104186592--104186712
58
2.1
58
95
0
215
45
10
13
30
1.77
104187495--104187541
25
1.9
25
86
4
69
55
2
0
42
1.12
104187998--104188062
32
2.0
32
87
0
94
40
12
9
38
1.75
104193625--104193656
16
2.0
16
93
0
55
25
15
18
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104199986--104200020
13
2.8
13
86
4
54
28
5
2
62
1.32
104199988--104200024
19
1.9
19
94
0
65
27
5
5
62
1.39
104200256--104200307
3
16.7
3
77
15
52
34
0
1
63
1.06
104201852--104201904
26
2.0
27
85
7
74
24
15
22
37
1.92
104203391--104203442
26
2.0
26
96
0
95
32
26
9
30
1.89
104210706--104210774
34
2.0
34
97
0
129
31
23
13
31
1.92
104215064--104215147
43
1.9
44
97
2
161
42
14
26
16
1.86
104215064--104215182
43
2.7
43
87
8
145
45
15
24
15
1.84
104216018--104216052
18
1.9
18
100
0
70
11
11
5
71
1.30
104216034--104216066
15
2.3
15
89
5
50
18
9
6
66
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356