genome.fa.s11.2.7.7.80.10.50.1000.339.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  339  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108482863--108482920	14	4.3	14	77	16	68	58	5	5	31	1.42
108482856--108482925	20	3.5	20	82	1	79	57	4	7	31	1.45
108482965--108483006	17	2.3	18	84	15	52	52	4	2	40	1.35
108483024--108483054	3	10.3	3	92	0	53	64	0	3	32	1.09
108483207--108483248	12	3.3	12	86	6	57	59	2	9	28	1.41
108483224--108483281	16	3.9	15	75	14	50	55	0	10	34	1.34
108483416--108483465	23	2.2	23	85	0	64	62	2	4	32	1.25
108483342--108483469	3	41.3	3	68	14	64	59	3	7	30	1.39
108485100--108485414	44	7.3	42	67	12	181	20	23	22	33	1.97
108485089--108485588	259	1.9	261	91	1	817	19	23	22	34	1.96
108485100--108485588	87	5.6	87	88	1	662	19	23	22	34	1.96
108485525--108485608	43	2.0	43	80	4	98	23	19	23	33	1.97
108490343--108490395	26	2.0	26	82	7	63	26	15	20	37	1.92
108491881--108491988	26	4.2	26	93	0	189	36	24	7	32	1.83
108496134--108496186	26	2.0	26	82	7	63	26	13	20	39	1.89
108497665--108497823	26	6.2	26	91	0	248	35	23	8	33	1.84
108497665--108497823	52	3.1	52	96	0	284	35	23	8	33	1.84
108511152--108511204	26	2.0	26	82	7	63	26	13	20	39	1.89
108512689--108512848	26	6.2	26	91	0	266	35	23	8	33	1.84
108512689--108512848	52	3.1	52	97	0	293	35	23	8	33	1.84
108520477--108520676	3	66.0	3	67	15	58	57	5	5	32	1.45
108520483--108520540	14	4.3	14	77	16	68	58	5	5	31	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108520476--108520545	20	3.5	20	82	1	79	57	4	7	31	1.45
108520829--108520869	12	3.2	12	86	6	55	58	2	9	29	1.43
108520961--108521165	3	67.0	3	67	15	57	58	2	8	30	1.42
108520961--108521010	18	2.6	18	87	9	64	58	0	8	34	1.28
108521032--108521081	23	2.2	23	85	0	64	62	2	4	32	1.25
108525179--108525717	3	182.3	3	66	13	133	27	8	3	60	1.40
108525889--108525921	14	2.3	15	89	5	50	21	6	6	66	1.35
108530904--108530942	17	2.3	17	81	0	51	35	2	5	56	1.35
108535594--108535652	23	2.6	22	79	10	66	55	0	1	42	1.09
108535594--108535638	21	2.0	21	87	8	63	53	0	2	44	1.13
108535872--108535913	19	2.2	19	83	8	50	57	0	7	35	1.26
108535990--108536049	29	2.1	28	81	9	68	58	6	6	28	1.49
108543206--108543370	72	2.3	72	88	2	251	35	16	12	35	1.86
108552525--108552571	22	2.2	21	88	3	67	25	17	12	44	1.84
108554131--108554168	18	2.1	18	90	0	58	71	7	21	0	1.11
108555361--108555395	12	2.9	12	91	0	52	74	5	17	2	1.14
108556470--108556504	12	2.9	12	91	0	52	74	5	17	2	1.14
108557425--108557470	16	2.8	16	83	6	56	71	8	19	0	1.11
108557582--108557616	12	2.9	12	91	0	52	74	5	17	2	1.14
108558501--108558554	25	2.2	24	83	3	63	27	1	5	64	1.26
108558598--108558664	29	2.2	32	79	12	79	25	5	4	64	1.36
108558679--108558726	25	1.9	25	87	8	71	37	6	0	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108570864--108570911	24	2.0	24	83	0	60	47	12	6	33	1.66
108579374--108579437	29	2.1	29	83	11	76	53	3	3	40	1.33
108579636--108579667	15	2.1	15	94	0	55	75	0	9	15	1.05
108579773--108579933	4	39.5	4	65	13	60	63	1	10	24	1.34
108579821--108579923	53	1.9	53	86	7	147	61	0	12	25	1.38
108579806--108579919	16	7.4	15	67	21	67	61	0	12	25	1.37
108580672--108580723	16	3.2	16	91	0	77	28	0	34	36	1.58
108580704--108580798	45	2.1	44	86	1	127	34	5	26	33	1.79
108580960--108580994	18	2.0	17	88	5	52	54	0	0	45	0.99
108580918--108580990	27	2.7	27	76	8	76	52	2	0	45	1.15
108581107--108581141	18	2.0	17	88	5	52	54	0	0	45	0.99
108580879--108581153	147	1.9	149	96	1	509	46	3	2	47	1.33
108581122--108581309	61	3.1	61	68	19	185	49	5	2	42	1.41
108581085--108581382	120	2.5	120	91	3	483	50	4	3	42	1.39
108581206--108581251	15	3.0	16	78	9	60	58	0	0	41	0.98
108582098--108582134	16	2.3	16	95	0	65	24	37	16	21	1.93
108586421--108586463	3	14.0	3	90	4	68	65	0	2	32	1.06
108586490--108586530	15	2.5	18	74	25	54	70	0	0	29	0.87
108587034--108587116	32	2.6	32	80	5	87	61	6	7	25	1.45
108588841--108588992	76	2.0	76	98	0	295	38	9	13	38	1.77
108605841--108606462	132	4.7	133	85	3	875	28	16	26	29	1.97
108605841--108606449	262	2.3	264	89	2	913	27	16	26	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108605843--108606445	44	13.8	45	77	5	563	27	16	26	29	1.97
108608020--108608076	22	2.5	22	78	18	64	22	7	5	64	1.38
108608025--108608075	21	2.5	20	78	9	57	25	7	3	62	1.40
108613056--108613083	14	2.0	14	100	0	56	35	7	0	57	1.26
108615863--108616010	72	2.1	72	84	2	190	36	18	15	29	1.92
108622614--108622652	20	2.0	20	100	0	78	20	12	15	51	1.76
108624899--108624999	39	2.6	38	89	6	148	38	23	24	12	1.90
108624918--108624981	21	3.2	21	73	13	80	40	21	25	12	1.88
108632416--108632458	14	3.1	14	96	3	79	53	11	0	34	1.37
108634248--108634305	27	2.1	27	87	0	80	39	0	12	48	1.40
108634254--108634308	27	2.0	27	92	0	92	38	0	14	47	1.45
108635000--108635036	15	2.7	14	84	15	51	43	0	2	54	1.14
108636368--108636393	13	2.0	13	100	0	52	69	0	23	7	1.14
108637901--108638042	40	3.5	40	78	4	135	26	18	19	36	1.94
108638394--108638440	22	2.2	21	88	3	67	53	27	2	17	1.55
108638515--108638562	14	3.4	14	76	2	51	50	25	0	25	1.50
108638523--108638578	21	2.6	22	88	2	78	48	26	0	25	1.52
108638952--108639069	41	2.9	41	82	2	130	23	14	24	37	1.92
108639382--108639620	72	3.3	72	90	4	385	39	17	11	31	1.85
108647501--108647593	18	5.2	18	80	0	78	35	12	20	31	1.90
108649728--108649762	9	3.8	9	85	7	52	71	0	2	25	1.00
108649829--108649872	19	2.2	20	84	11	56	65	0	4	29	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108657590--108657615	6	4.3	6	100	0	52	0	0	84	15	0.62
108664825--108664858	9	3.7	9	96	4	59	79	0	2	17	0.86
108666202--108666255	27	2.0	27	100	0	108	37	25	14	22	1.93
108670507--108670553	16	2.9	16	78	6	51	61	12	21	4	1.48
108675069--108675115	16	2.9	16	78	6	51	61	12	21	4	1.48
108679373--108679453	35	2.3	35	78	4	101	23	19	22	34	1.96
108683193--108683228	17	2.1	18	89	5	56	38	0	5	55	1.23
108686242--108686274	17	1.9	17	88	11	50	48	0	0	51	1.00
108694697--108694745	21	2.3	21	85	3	62	26	4	4	65	1.29
108695090--108695130	14	2.9	14	77	0	55	24	7	29	39	1.82
108697798--108697838	14	2.9	14	77	0	55	21	9	31	36	1.86
108698074--108698642	281	2.0	281	97	0	1075	27	19	15	37	1.92
108702446--108702732	132	2.2	132	88	3	418	31	17	17	33	1.93
108702461--108702821	132	2.7	131	82	6	390	28	18	19	33	1.95
108704694--108704804	36	3.3	36	69	19	121	19	3	29	46	1.67
108704715--108704838	28	4.1	28	68	18	79	22	2	29	45	1.65
108704698--108704837	64	2.2	64	94	0	244	22	2	29	45	1.67
108706931--108706960	13	2.3	13	94	0	51	33	0	16	50	1.46
108709391--108709415	13	1.9	13	100	0	50	40	4	0	56	1.18
108713411--108713463	18	2.9	18	85	0	70	32	15	15	37	1.88
108713432--108713486	18	3.1	18	81	0	65	30	16	16	36	1.91
108717318--108717348	12	2.6	12	100	0	62	35	29	19	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108719920--108719963	23	1.9	23	85	0	61	43	13	18	25	1.86
108747807--108747900	47	2.0	47	100	0	188	27	10	17	44	1.81
108761882--108761959	39	2.0	39	100	0	156	25	10	17	46	1.80
108765526--108765550	9	2.8	9	100	0	50	12	24	12	52	1.72
108771976--108772021	20	2.2	21	84	3	58	34	13	8	43	1.74
108790591--108790631	21	2.0	21	90	0	64	19	29	21	29	1.98
108807140--108807215	9	8.1	9	77	8	71	31	0	19	48	1.49
108810584--108810778	84	2.3	84	89	1	293	28	21	16	33	1.95
108811110--108811154	15	3.1	15	80	6	56	42	40	2	15	1.59
108811118--108811210	7	13.1	7	72	8	64	44	37	2	16	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356