genome.fa.s11.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  135  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43407462--43408083	120	5.2	120	98	0	1201	44	2	5	48	1.39
43407914--43407949	18	2.1	18	89	5	56	38	0	0	61	0.96
43408302--43408370	16	4.2	16	88	3	111	36	36	2	24	1.71
43408302--43408370	33	2.1	32	91	2	111	36	36	2	24	1.71
43413028--43413165	55	2.5	54	77	1	141	38	18	23	20	1.93
43421002--43421185	40	4.6	40	77	10	189	24	27	22	25	2.00
43420979--43421186	79	2.6	79	79	11	203	25	26	22	26	2.00
43425663--43425846	40	4.6	40	87	5	239	23	23	27	25	2.00
43438180--43438545	48	7.7	49	73	12	264	23	28	19	28	1.98
43438176--43438550	94	3.9	95	77	11	333	23	28	19	28	1.98
43445595--43445673	37	2.1	37	88	4	115	25	30	18	25	1.98
43445792--43446349	47	12.1	47	86	8	763	29	29	8	31	1.88
43445976--43446059	25	3.3	25	64	23	66	33	29	4	32	1.78
43445792--43446349	92	6.0	94	87	8	763	29	29	8	31	1.88
43449736--43449970	119	2.0	119	93	1	400	25	26	22	25	2.00
43449736--43449970	40	5.9	40	93	1	393	25	26	22	25	2.00
43449749--43450049	119	2.5	118	86	5	376	24	26	22	25	2.00
43449749--43450049	40	7.6	40	86	5	281	24	26	22	25	2.00
43449736--43449970	79	3.0	80	93	1	393	25	26	22	25	2.00
43450417--43450519	43	2.4	43	100	0	206	26	35	15	22	1.94
43452373--43452451	37	2.1	37	88	4	115	25	30	18	25	1.98
43452570--43453313	47	16.1	47	91	4	1174	28	29	9	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43471361--43471425	22	3.0	22	80	8	78	20	23	23	33	1.97
43471767--43471824	19	3.4	19	65	30	58	18	17	17	46	1.84
43471756--43471873	6	19.3	6	71	19	84	18	17	14	49	1.80
43471756--43471889	31	4.4	31	85	7	159	18	17	14	50	1.79
43473757--43473931	26	6.6	27	86	4	232	39	20	8	32	1.82
43473757--43473979	26	8.5	26	81	8	186	39	20	8	31	1.83
43473757--43473978	79	2.8	79	85	5	270	39	20	9	31	1.83
43473757--43473931	53	3.3	54	87	5	234	39	20	8	32	1.82
43473757--43473979	53	4.2	53	82	7	172	39	20	8	31	1.83
43474091--43474317	24	9.4	24	89	6	334	36	17	21	25	1.94
43474091--43474317	122	1.9	122	89	5	363	36	17	21	25	1.94
43474740--43474804	22	3.0	22	80	8	78	20	23	23	33	1.97
43474962--43475035	27	2.8	27	89	2	105	17	24	21	36	1.95
43475183--43475240	19	3.4	19	65	30	58	18	17	17	46	1.84
43475172--43475291	6	19.3	6	71	19	86	19	17	15	48	1.81
43475172--43475307	31	4.4	31	86	3	168	19	16	14	49	1.80
43477208--43477433	27	8.7	27	77	8	193	40	20	8	30	1.83
43477208--43477450	79	3.1	78	81	7	237	40	20	9	30	1.83
43477208--43477362	52	3.0	52	87	5	208	40	19	9	31	1.83
43477232--43477433	52	3.9	52	79	8	160	41	20	8	29	1.82
43477428--43477573	27	5.5	27	86	5	181	28	21	8	41	1.82
43477208--43477478	131	2.1	132	79	4	280	39	20	8	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43477428--43477577	80	1.9	79	87	1	219	30	22	8	40	1.82
43477414--43477581	53	3.2	53	80	5	169	32	21	7	38	1.82
43477576--43477817	27	9.3	27	85	6	302	35	19	21	23	1.96
43477575--43477817	104	2.3	104	86	5	314	35	19	20	23	1.96
43478245--43478306	21	2.9	22	80	4	72	22	20	22	33	1.97
43478242--43478306	22	3.0	22	79	4	78	21	21	23	33	1.97
43478464--43478535	26	2.7	27	85	4	85	20	25	19	34	1.96
43478694--43478781	6	14.3	6	73	13	72	20	19	13	46	1.83
43478682--43478781	31	3.2	31	89	0	146	20	18	15	47	1.83
43480647--43480878	27	8.6	27	83	6	215	40	20	8	31	1.82
43480647--43480907	81	3.2	80	81	6	278	39	21	8	30	1.83
43480647--43480907	54	4.9	54	81	7	253	39	21	8	30	1.83
43480669--43480905	27	8.8	27	83	4	167	40	20	8	30	1.82
43480915--43481053	27	5.3	25	76	13	136	32	23	4	39	1.74
43480888--43481053	79	2.1	79	84	4	210	34	23	4	37	1.74
43481049--43481277	27	8.5	27	84	0	244	37	20	19	22	1.94
43481721--43481776	22	2.5	22	75	11	60	21	23	19	35	1.96
43481721--43481785	22	3.0	22	69	13	53	21	23	20	35	1.96
43481943--43482017	27	2.8	27	87	2	98	20	24	20	36	1.95
43482167--43482210	19	2.3	19	100	0	88	20	20	15	43	1.88
43482177--43482277	31	3.3	31	81	4	116	19	18	14	46	1.84
43482177--43482261	6	13.8	6	73	18	68	20	20	15	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43484152--43484330	27	6.6	26	83	7	198	39	18	8	32	1.82
43484152--43484330	81	2.2	81	83	4	218	39	18	8	32	1.82
43484314--43484386	27	2.7	27	89	0	110	41	21	6	30	1.79
43484314--43484399	27	3.2	27	88	0	109	41	19	6	31	1.78
43484407--43484581	27	6.5	27	88	0	233	30	22	6	40	1.79
43484593--43484752	27	5.9	27	88	0	221	35	19	20	25	1.95
43484594--43484780	81	2.3	81	85	4	254	35	18	20	25	1.95
43485205--43485269	22	3.0	22	82	8	87	20	24	23	32	1.98
43485401--43485475	26	2.8	25	80	13	71	20	22	18	38	1.93
43485429--43485501	27	2.7	27	87	2	94	19	24	19	36	1.94
43485661--43485757	6	15.8	6	72	16	74	19	17	15	47	1.83
43485638--43485773	31	4.4	31	84	3	150	19	16	15	49	1.80
43490983--43491088	54	2.1	48	76	19	108	33	16	25	23	1.96
43491010--43491159	53	2.8	52	76	13	144	36	16	22	24	1.94
43504957--43505101	40	3.6	40	82	7	161	25	24	27	22	2.00
43504956--43505120	80	2.1	80	80	8	185	26	23	27	23	2.00
43509354--43509560	53	3.9	53	78	6	206	32	14	25	27	1.94
43515648--43515853	55	3.8	53	80	9	224	35	16	24	22	1.94
43519625--43519705	40	2.0	40	97	0	153	25	7	17	49	1.72
43523215--43523425	55	3.9	53	74	12	187	34	17	25	23	1.95
43523223--43523423	108	1.8	110	87	4	300	34	17	25	22	1.96
43526847--43527000	48	3.2	48	96	0	281	32	27	5	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43526847--43527171	96	3.5	96	85	10	505	31	28	6	33	1.83
43526955--43527035	35	2.3	35	93	4	135	33	29	6	30	1.82
43526907--43527083	83	2.1	83	93	2	300	31	28	7	32	1.85
43526859--43527131	131	2.1	131	94	1	474	31	28	6	33	1.84
43526992--43527171	48	3.8	48	95	1	319	31	28	7	33	1.84
43526847--43527171	179	1.8	179	97	0	614	31	28	6	33	1.83
43543751--43543994	127	1.9	128	88	1	373	21	38	3	37	1.70
43549730--43549852	29	4.3	29	83	6	162	25	15	29	30	1.96
43552459--43552489	4	7.8	4	100	0	62	22	0	0	77	0.77
43553517--43553639	29	4.3	29	78	2	133	26	12	29	31	1.92
43561164--43561225	32	1.9	32	96	0	115	22	24	6	46	1.75
43561331--43561377	23	2.0	23	87	0	67	19	23	14	42	1.88
43565497--43565537	5	8.0	5	91	2	64	0	21	2	75	0.92
43566143--43566210	12	5.6	12	71	22	61	25	1	5	67	1.21
43566856--43566920	31	2.1	31	85	0	85	61	18	4	15	1.50
43567148--43567187	21	1.9	21	84	0	53	5	45	20	30	1.72
43567610--43567641	13	2.4	14	94	5	57	53	9	0	37	1.34
43570091--43570133	18	2.3	19	80	15	54	44	0	13	41	1.44
43570860--43570906	19	2.5	19	76	10	51	72	4	2	21	1.12
43571330--43571581	23	11.0	22	71	13	66	40	24	5	29	1.79
43571478--43571534	22	2.5	23	77	2	62	50	21	0	28	1.48
43571412--43571641	91	2.5	92	79	9	263	41	22	3	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43571383--43571641	23	11.3	23	78	8	233	41	22	3	32	1.72
43575246--43575304	28	2.1	27	93	3	100	27	0	11	61	1.31
43576190--43576247	21	2.8	21	74	7	55	56	0	5	37	1.21
43576207--43576276	30	2.2	31	80	12	79	48	1	8	41	1.42
43576914--43576962	26	2.0	24	84	11	64	57	8	6	28	1.52
43579447--43579491	11	3.9	11	80	11	54	35	0	2	62	1.08
43581253--43581567	46	6.8	45	86	7	411	42	14	23	19	1.88
43581263--43581567	92	3.3	92	90	0	468	41	15	23	19	1.89
43581263--43581567	138	2.2	138	92	0	502	41	15	23	19	1.89
43583959--43584134	47	3.7	47	88	1	237	32	9	31	27	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356