genome.fa.s11.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  130  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41460614--41460648	16	2.3	15	90	5	52	25	0	2	71	1.00
41463044--41463200	43	3.7	43	77	12	153	31	22	17	28	1.97
41470293--41470331	20	2.0	20	89	0	60	17	12	28	41	1.87
41492408--41492469	15	4.1	15	83	4	72	58	16	14	11	1.64
41507087--41507161	26	2.9	26	83	13	84	29	20	24	26	1.99
41507100--41507171	26	2.8	26	89	2	101	27	20	25	26	1.99
41509484--41509508	3	8.3	3	100	0	50	64	0	0	36	0.94
41519593--41519700	29	3.8	29	83	1	128	31	28	12	27	1.92
41523505--41523723	40	5.5	40	87	4	275	21	23	28	26	1.99
41531574--41531831	40	6.4	40	85	1	277	24	22	27	25	2.00
41540241--41540278	20	1.9	20	100	0	76	26	10	26	36	1.89
41541485--41541521	12	3.1	12	96	0	65	0	27	62	10	1.28
41561535--41561583	15	3.4	14	80	8	62	71	0	26	2	0.97
41567825--41567878	21	2.5	22	84	9	65	72	3	1	22	1.10
41571465--41571507	20	2.2	20	83	8	52	46	2	16	34	1.60
41571566--41571610	20	2.2	20	88	0	63	51	0	13	35	1.41
41573263--41573429	46	3.7	45	79	13	198	22	20	28	29	1.98
41573256--41573424	92	1.9	90	93	2	293	21	21	28	28	1.98
41580738--41580910	46	3.7	46	77	11	183	21	20	27	30	1.98
41580734--41580905	93	1.8	93	88	2	265	21	20	28	29	1.98
41583087--41583272	41	4.6	41	87	3	243	25	24	25	24	2.00
41583089--41583242	81	1.9	82	87	4	231	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41586983--41587063	23	3.5	23	89	0	126	20	20	17	40	1.91
41587191--41587268	33	2.6	29	80	10	77	25	25	25	23	2.00
41587209--41587303	33	2.9	33	85	3	111	28	20	23	28	1.98
41589220--41589281	25	2.5	25	78	0	70	25	30	12	30	1.93
41598109--41598303	49	3.9	49	76	6	205	28	17	25	28	1.98
41598111--41598298	100	1.9	100	89	2	297	27	18	24	29	1.98
41600949--41601279	59	5.6	59	88	2	513	46	5	2	45	1.40
41600949--41601271	118	2.7	118	93	1	569	46	5	2	45	1.40
41604871--41605027	43	3.7	43	76	5	147	36	21	17	25	1.94
41604911--41605069	43	3.7	42	77	3	147	38	19	16	25	1.93
41604871--41605073	86	2.4	86	82	3	239	34	20	18	25	1.96
41604954--41605108	43	3.6	43	79	2	134	34	18	20	27	1.96
41606108--41606166	30	2.0	30	83	6	75	55	3	6	33	1.43
41608561--41608592	16	2.0	16	93	0	55	46	6	6	40	1.54
41614511--41614754	48	5.1	48	75	11	232	26	19	26	27	1.99
41617305--41617358	17	3.1	17	78	10	56	50	7	18	24	1.72
41618162--41618201	16	2.4	16	87	4	53	0	20	5	75	0.99
41620841--41620870	14	2.1	14	93	0	51	20	16	30	33	1.94
41629283--41629361	37	2.1	37	90	0	122	25	29	18	26	1.98
41629480--41630077	47	12.7	47	95	0	1038	29	29	8	32	1.86
41633390--41633572	40	4.6	40	81	6	194	24	26	22	26	2.00
41633879--41633957	29	2.7	29	86	5	106	27	32	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41633939--41634084	43	3.4	43	98	0	283	26	34	15	23	1.94
41635603--41636404	47	16.7	47	85	6	1047	29	29	9	31	1.88
41635603--41636404	141	5.6	141	89	4	1201	29	29	9	31	1.88
41635822--41635944	62	2.0	62	93	0	210	30	28	11	29	1.92
41635775--41635991	109	2.0	109	97	0	407	30	29	10	29	1.90
41638784--41638826	19	2.3	19	100	0	86	48	16	4	30	1.66
41641917--41642054	57	2.4	58	83	6	165	33	21	15	29	1.94
41649619--41649791	45	3.8	45	80	3	168	41	18	18	21	1.90
41649754--41649902	46	3.3	46	85	2	194	47	16	18	17	1.83
41651276--41651314	18	2.2	18	100	0	78	10	0	28	61	1.28
41651282--41651323	18	2.3	18	87	0	57	16	2	26	54	1.54
41654406--41654473	28	2.4	27	81	11	84	30	2	8	57	1.44
41655823--41655847	6	4.2	6	100	0	50	0	52	16	32	1.44
41655866--41655907	6	6.8	6	84	12	50	78	0	21	0	0.75
41655871--41655906	14	2.6	13	91	8	54	80	0	19	0	0.71
41655866--41655906	20	2.1	19	95	4	73	80	0	19	0	0.71
41675138--41675514	38	9.7	39	88	6	561	21	27	21	30	1.98
41675138--41675515	78	4.9	78	91	4	568	21	27	21	30	1.98
41675138--41675512	116	3.2	114	89	5	556	21	27	21	30	1.98
41677755--41677819	22	3.0	22	82	8	87	32	23	24	20	1.98
41678208--41678348	27	5.2	27	79	0	147	27	19	17	35	1.94
41678208--41678341	54	2.5	54	83	0	169	26	20	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41686551--41686695	40	3.6	40	85	4	193	25	24	26	23	2.00
41689469--41689509	17	2.5	17	88	4	57	56	14	4	24	1.58
41689477--41689511	17	2.1	17	94	0	61	57	11	5	25	1.56
41696328--41696477	67	2.2	67	81	8	171	32	17	28	21	1.96
41696352--41696535	67	2.8	64	76	8	185	30	17	29	22	1.97
41700898--41701012	43	2.7	42	76	11	117	34	24	15	25	1.95
41712022--41712093	29	2.5	30	77	13	78	31	27	13	26	1.94
41718622--41718963	40	8.6	40	90	2	458	24	20	27	27	1.99
41726025--41726367	40	8.6	40	91	2	476	24	20	27	27	1.99
41730001--41730068	29	2.3	29	80	5	84	26	30	14	27	1.95
41730177--41730248	29	2.5	30	82	13	96	30	29	12	27	1.93
41729929--41730242	174	1.8	173	88	2	486	31	24	13	30	1.94
41732932--41733020	27	3.3	27	77	3	99	40	19	15	24	1.90
41733926--41734020	27	3.6	27	94	2	158	40	16	16	26	1.90
41735615--41735799	79	2.3	81	83	7	227	24	22	27	25	2.00
41735615--41735799	40	4.7	40	84	6	225	24	22	27	25	2.00
41735668--41735832	79	2.1	79	83	6	201	26	20	27	26	1.99
41738118--41738221	27	3.9	27	81	5	122	43	20	12	24	1.86
41738161--41738208	25	1.9	25	91	0	78	45	18	14	20	1.85
41738317--41738342	10	2.6	10	100	0	52	11	34	46	7	1.69
41738743--41738796	27	2.0	27	96	0	99	35	25	14	24	1.94
41741645--41741780	27	5.1	27	81	1	157	39	16	14	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41741645--41741779	54	2.5	54	84	3	175	40	17	14	28	1.88
41741888--41741921	17	1.9	17	88	5	50	17	35	29	17	1.93
41744599--41744769	50	3.4	50	88	0	243	26	21	15	37	1.92
41751989--41752027	20	2.0	20	100	0	78	20	10	20	48	1.78
41751993--41752038	20	2.3	20	84	0	56	28	10	15	45	1.79
41752993--41753151	43	3.7	43	72	10	128	25	16	25	32	1.96
41754448--41754558	34	3.3	34	82	5	143	36	20	7	36	1.81
41757203--41757343	27	5.2	27	78	0	129	26	17	17	37	1.93
41757231--41757343	54	2.1	54	85	3	147	26	17	17	38	1.92
41757327--41757560	27	8.7	27	81	4	143	30	8	21	39	1.82
41757383--41757560	27	6.6	27	86	1	189	29	7	21	41	1.81
41759515--41759562	6	7.8	6	82	13	62	52	14	16	16	1.76
41759957--41760089	27	5.0	27	85	0	178	23	18	21	36	1.95
41760025--41760368	27	12.7	27	80	5	293	30	9	20	39	1.85
41764832--41764879	25	1.9	25	86	0	69	35	25	12	27	1.92
41768036--41768175	53	2.6	53	80	4	147	38	19	22	19	1.93
41769611--41769683	25	2.9	25	89	0	110	24	21	24	28	1.99
41769729--41769787	21	2.8	20	84	2	64	30	22	8	38	1.83
41769749--41769795	10	4.7	10	94	5	78	34	19	8	38	1.82
41771667--41771698	9	3.4	10	87	12	50	46	15	9	28	1.77
41777658--41777730	25	2.9	25	83	0	101	23	23	24	28	1.99
41777796--41777832	10	3.7	10	92	7	58	32	18	10	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41777762--41777826	21	3.0	21	81	2	67	32	16	12	38	1.86
41786066--41786168	53	1.9	53	92	0	170	36	11	19	32	1.88
41786700--41786804	53	2.0	53	81	3	122	36	18	25	20	1.95
41800851--41800883	17	1.9	17	88	11	50	36	0	27	36	1.57
41804922--41805047	62	2.0	62	98	0	243	35	15	16	31	1.91
41809739--41809781	20	2.1	20	86	4	59	55	9	25	9	1.61
41811094--41811288	52	3.6	53	80	2	167	21	24	18	36	1.95
41811374--41811420	23	2.0	23	95	0	85	31	17	6	44	1.73
41813170--41813335	45	3.7	44	84	4	181	24	19	17	38	1.93
41813170--41813335	90	1.8	90	83	5	219	24	19	17	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356