genome.fa.s11.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  132  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42237291--42237422	7	18.6	7	74	9	61	39	39	0	20	1.58
42237298--42237372	21	3.5	21	87	1	105	36	44	1	18	1.59
42237360--42237454	43	2.2	42	81	5	111	47	32	0	20	1.50
42237354--42237454	14	7.1	14	81	3	112	46	33	0	19	1.50
42237360--42237454	7	13.4	7	77	2	91	47	32	0	20	1.50
42237944--42238025	39	2.1	39	90	0	128	24	21	18	35	1.96
42245884--42245924	20	2.1	19	90	4	64	43	12	2	41	1.55
42246306--42246367	27	2.2	28	91	5	108	30	19	3	46	1.65
42248142--42248232	29	3.2	29	87	1	130	21	13	34	30	1.92
42250795--42250868	37	2.0	37	100	0	148	43	18	18	18	1.89
42250846--42250906	28	2.2	28	79	5	70	32	22	16	27	1.96
42251248--42251331	33	2.9	27	76	20	80	21	22	29	26	1.99
42251262--42251366	33	3.2	33	91	1	156	21	20	27	29	1.98
42260114--42260381	40	6.7	40	89	0	403	18	20	29	31	1.96
42267384--42267605	47	4.7	45	73	13	171	22	28	20	28	1.98
42272684--42272754	35	2.0	35	91	5	117	26	25	11	36	1.90
42275955--42276005	23	2.2	24	92	3	86	41	19	21	17	1.91
42279507--42279689	40	4.6	40	93	1	280	23	20	28	27	1.99
42279509--42279724	79	2.7	80	84	3	215	24	20	29	25	1.99
42287379--42287637	77	3.3	79	85	4	303	24	18	28	28	1.98
42287417--42287637	40	5.6	40	91	3	308	24	19	28	28	1.98
42287417--42287672	79	3.3	80	82	4	229	25	19	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42298357--42298464	3	35.0	3	77	10	103	60	2	4	32	1.32
42298490--42298522	16	2.1	16	88	5	50	66	0	0	33	0.92
42301918--42301999	25	3.3	25	87	0	110	25	25	13	35	1.93
42301939--42302034	25	3.8	25	84	0	102	25	23	14	36	1.93
42301970--42302043	25	3.0	25	87	0	85	22	25	14	36	1.93
42308426--42308504	37	2.1	37	86	4	106	26	30	17	25	1.97
42308623--42309055	47	9.1	47	92	2	659	28	29	9	32	1.88
42308623--42309055	143	3.0	143	92	2	699	28	29	9	32	1.88
42308623--42309055	96	4.5	96	91	2	676	28	29	9	32	1.88
42313669--42313741	25	3.0	25	84	9	96	17	26	23	32	1.97
42321287--42321412	39	3.2	39	89	0	189	22	19	30	27	1.98
42321290--42321439	39	3.8	39	85	1	131	21	22	31	25	1.98
42321290--42321444	78	2.0	78	81	5	179	21	21	30	26	1.98
42324963--42325030	24	3.1	24	66	24	67	38	7	8	45	1.63
42324966--42325052	42	2.1	42	95	0	156	36	9	6	47	1.62
42324973--42325039	21	3.2	21	67	23	59	38	5	7	47	1.56
42325505--42325535	16	1.9	16	100	0	62	32	6	25	35	1.82
42326819--42326863	23	1.9	24	90	4	74	46	13	6	33	1.69
42329314--42329509	102	1.9	102	88	0	293	22	10	24	42	1.84
42332789--42332833	5	9.0	5	95	0	81	77	0	2	20	0.87
42333091--42333177	9	9.7	9	80	5	95	44	21	8	25	1.79
42333202--42333250	6	7.8	6	86	8	71	18	0	4	77	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42338626--42338698	30	2.4	30	83	0	92	12	34	31	21	1.91
42338934--42339014	42	1.9	42	82	5	101	22	34	25	17	1.95
42343815--42343895	30	2.5	31	84	9	110	16	6	22	55	1.62
42343965--42344034	15	4.7	15	70	7	52	21	11	22	44	1.84
42346934--42346970	16	2.3	16	95	0	65	10	18	40	29	1.85
42350270--42350532	47	5.6	47	90	3	384	33	8	29	29	1.87
42352665--42352739	38	2.0	38	86	5	107	30	18	26	24	1.98
42352793--42352969	40	4.4	40	87	0	257	25	20	26	27	1.99
42352975--42353063	40	2.2	40	87	0	133	25	22	25	25	2.00
42352879--42353262	96	4.0	96	98	0	732	25	22	25	25	2.00
42353055--42353086	16	2.0	16	100	0	64	25	31	25	18	1.98
42353071--42353159	40	2.2	40	87	0	133	25	22	25	25	2.00
42353151--42353182	16	2.0	16	100	0	64	25	31	25	18	1.98
42353167--42353348	40	4.6	40	85	0	238	25	21	26	25	1.99
42356928--42357286	47	7.6	47	93	2	549	32	8	29	29	1.87
42360287--42360396	43	2.6	42	78	9	125	30	24	13	30	1.94
42366675--42366721	24	1.9	25	91	4	78	27	4	21	46	1.69
42373775--42373882	26	4.2	26	89	0	171	33	6	23	37	1.80
42388791--42389008	27	8.1	27	81	4	224	29	21	7	42	1.79
42388798--42389008	54	3.9	54	87	3	300	29	20	7	42	1.80
42388791--42389013	81	2.7	81	85	0	302	28	21	7	42	1.80
42389235--42389384	67	2.2	67	91	0	237	20	28	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42389563--42389687	6	20.3	6	70	16	78	20	17	13	48	1.80
42389563--42389673	31	3.6	31	86	0	150	19	18	13	48	1.80
42391520--42391589	27	2.6	27	88	0	95	32	15	22	28	1.95
42391598--42391815	27	8.1	27	83	2	258	30	23	5	39	1.79
42392033--42392207	67	2.6	67	93	0	287	17	28	22	31	1.97
42392118--42392168	27	1.9	26	84	4	66	17	27	19	35	1.94
42392398--42392506	6	17.8	6	67	14	53	19	18	13	48	1.81
42392398--42392485	37	2.4	37	88	0	131	19	19	13	47	1.82
42395068--42395246	40	4.5	40	92	2	281	26	27	24	21	1.99
42402357--42402535	40	4.5	40	84	4	227	26	27	24	21	1.99
42402368--42402535	80	2.1	80	88	0	255	27	26	23	22	1.99
42405974--42406115	29	4.9	29	80	3	169	36	14	27	21	1.92
42405950--42406116	87	1.9	88	91	1	273	35	14	28	22	1.93
42406771--42406828	24	2.4	24	97	0	107	18	3	29	48	1.65
42409914--42409962	20	2.5	20	93	0	80	34	2	24	38	1.67
42424210--42424473	79	3.3	80	90	4	385	25	27	22	25	2.00
42424210--42424473	40	6.7	40	82	9	326	25	27	22	25	2.00
42431267--42431321	27	2.0	27	100	0	110	36	0	7	56	1.27
42442086--42442263	27	6.6	27	82	3	178	29	28	14	26	1.95
42445004--42445043	19	2.0	20	85	4	55	15	22	0	62	1.32
42450737--42450914	27	6.6	27	82	3	178	29	28	14	26	1.95
42475984--42476133	27	5.5	27	80	3	131	28	29	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42475984--42476160	55	3.3	54	77	7	155	30	27	15	25	1.96
42476005--42476159	27	5.7	27	78	6	111	30	27	16	25	1.96
42478912--42479063	75	2.0	75	100	0	304	42	17	22	17	1.89
42480078--42480117	21	1.9	21	85	10	55	12	20	0	67	1.22
42485604--42485691	44	2.0	44	93	4	151	18	21	32	27	1.96
42489680--42489864	67	2.9	63	73	8	174	25	30	15	29	1.95
42499393--42499433	21	2.0	21	95	0	73	0	60	0	39	0.96
42503896--42503933	19	2.1	19	95	5	69	50	10	10	28	1.70
42508626--42508664	19	2.1	19	95	0	69	17	41	28	12	1.87
42519859--42519894	17	2.1	18	89	5	56	52	0	8	38	1.32
42520727--42520759	15	2.1	16	94	5	59	78	3	0	18	0.87
42523048--42523403	47	7.6	47	69	14	184	28	19	28	23	1.98
42523048--42523401	94	3.8	92	76	10	326	28	19	28	23	1.98
42530693--42531044	47	7.5	46	72	10	225	28	20	29	21	1.98
42530692--42531048	94	3.8	91	78	8	371	28	20	29	22	1.98
42539008--42539169	40	4.1	40	87	3	211	20	25	28	25	1.99
42541239--42541361	57	2.1	58	82	4	151	32	20	17	30	1.95
42548398--42548459	31	2.0	31	93	0	106	33	27	16	22	1.95
42560075--42560103	11	2.6	11	100	0	58	37	10	10	41	1.73
42575861--42575944	26	3.2	26	96	0	150	33	4	25	36	1.77
42577378--42577441	26	2.4	26	86	5	83	31	25	14	29	1.94
42577545--42577657	27	4.2	27	81	3	120	17	24	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42577543--42577657	54	2.1	54	85	3	151	17	24	22	35	1.95
42582778--42582999	40	5.6	39	81	8	216	26	21	27	25	1.99
42594079--42594183	50	2.1	50	91	3	167	21	21	11	44	1.84
42594153--42594202	19	2.6	19	93	0	82	20	24	12	44	1.85
42594079--42594207	25	5.4	25	75	14	128	21	22	10	44	1.83
42596714--42596806	40	2.3	40	83	3	116	26	16	25	31	1.96
42598558--42598601	20	2.3	20	88	7	65	18	31	36	13	1.90
42599614--42599835	42	5.1	42	71	8	149	25	15	28	29	1.96
42601877--42601968	45	2.0	45	100	0	184	39	16	15	29	1.89
42602540--42602921	207	1.8	207	97	0	728	42	18	8	30	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356