genome.fa.s11.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  174  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56705093--56705383	50	5.8	50	82	5	347	25	17	26	30	1.97
56705099--56705383	101	2.8	99	82	6	324	25	17	26	30	1.97
56705470--56705521	25	2.0	26	81	11	61	40	1	21	36	1.64
56724343--56724496	28	5.5	28	96	0	265	33	27	11	26	1.91
56729852--56731237	354	3.9	350	81	2	1438	33	20	13	32	1.92
56738613--56738666	26	2.1	25	83	10	65	22	9	1	66	1.30
56740137--56740291	47	3.3	46	70	10	125	25	19	32	23	1.98
56746063--56746427	95	3.9	92	76	9	326	27	20	29	22	1.98
56746063--56746428	47	7.7	47	73	12	241	27	20	30	22	1.98
56752699--56752758	30	2.0	30	87	6	86	36	8	26	28	1.85
56754150--56754427	27	10.3	27	84	1	180	30	23	8	36	1.85
56754150--56754385	54	4.4	54	86	2	321	29	23	8	38	1.85
56754150--56754385	81	2.9	80	85	1	328	29	23	8	38	1.85
56754150--56754414	54	4.9	54	82	3	291	30	23	8	37	1.85
56754130--56754414	81	3.5	81	82	1	302	31	22	8	37	1.85
56754310--56754614	54	5.6	54	73	8	181	38	21	9	29	1.85
56754319--56754502	80	2.3	80	81	0	197	37	22	8	31	1.84
56754310--56754578	27	10.0	27	77	4	186	38	21	10	30	1.86
56754378--56754611	27	8.7	27	78	4	195	42	20	8	28	1.82
56754378--56754610	80	2.9	81	81	3	229	42	20	9	28	1.82
56754540--56754667	28	4.6	27	74	9	87	45	19	4	30	1.71
56755393--56755440	25	1.9	25	95	0	87	29	20	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56755467--56755542	20	3.9	20	86	8	104	36	10	19	32	1.86
56755487--56755542	11	5.5	11	75	16	66	37	12	19	30	1.89
56755592--56755688	26	3.8	26	90	1	153	24	24	24	25	2.00
56755832--56755924	42	2.2	42	92	0	150	26	15	20	37	1.92
56755948--56756059	31	3.8	30	84	9	142	27	19	25	26	1.99
56757246--56757293	25	1.9	25	95	0	87	27	22	20	29	1.99
56757320--56757395	20	3.9	20	86	8	104	36	10	19	32	1.86
56757340--56757395	11	5.5	11	75	16	66	37	12	19	30	1.89
56757445--56757541	26	3.8	26	90	1	153	24	24	24	25	2.00
56757685--56757777	42	2.2	42	92	0	150	26	15	20	37	1.92
56757801--56757912	31	3.8	30	84	9	142	27	19	25	26	1.99
56759099--56759146	25	1.9	25	95	0	87	27	22	20	29	1.99
56759173--56759231	20	3.0	20	86	11	79	35	10	20	33	1.86
56759193--56759231	11	3.7	11	86	13	64	35	12	20	30	1.90
56759436--56759527	42	2.2	42	96	0	166	27	11	21	39	1.89
56759551--56759624	31	2.4	31	95	2	132	25	16	27	31	1.96
56762402--56762570	46	3.7	46	73	13	141	21	19	28	30	1.98
56762398--56762569	93	1.8	93	85	4	240	21	19	29	29	1.98
56784924--56785077	28	5.5	28	93	3	249	26	11	27	34	1.91
56794316--56794362	25	1.9	24	87	12	69	34	21	14	29	1.93
56798547--56798599	26	2.0	26	100	0	106	33	22	0	43	1.54
56798878--56799002	43	2.9	43	89	2	162	33	24	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56809039--56809214	46	3.8	46	78	12	198	30	28	20	20	1.98
56809046--56809217	93	1.8	93	93	0	299	29	29	20	20	1.98
56809088--56809226	47	3.0	46	74	16	135	30	28	18	22	1.97
56811613--56811653	15	2.7	15	78	14	57	60	9	17	12	1.57
56814614--56814785	93	1.8	93	96	2	319	29	29	20	20	1.98
56814607--56814782	46	3.8	47	81	12	229	30	29	19	20	1.97
56817104--56817136	16	2.0	17	88	5	50	36	0	12	51	1.39
56817920--56817944	10	2.5	10	100	0	50	16	12	0	72	1.13
56818929--56818962	14	2.4	14	90	0	50	35	2	20	41	1.68
56819828--56819865	15	2.6	15	79	4	51	10	10	15	63	1.52
56823002--56823087	45	1.9	44	95	2	154	24	9	24	41	1.84
56824125--56824168	22	2.0	22	90	0	70	38	9	22	29	1.85
56825254--56825426	27	6.4	27	89	0	256	34	19	21	24	1.96
56826155--56826214	27	2.3	26	85	2	75	21	23	20	35	1.96
56834440--56834608	45	3.8	45	87	1	223	27	23	22	27	1.99
56842320--56842351	12	2.6	13	90	9	50	50	25	6	18	1.70
56849569--56849691	22	5.3	22	62	27	58	32	13	29	25	1.93
56849553--56849737	47	3.9	47	91	0	289	33	11	28	26	1.92
56849942--56850054	37	3.1	37	92	0	181	23	18	30	28	1.98
56856097--56856218	22	5.3	22	62	21	61	25	29	11	33	1.91
56856069--56856502	47	9.1	47	88	4	581	26	29	9	33	1.88
56856090--56856502	142	2.9	142	89	6	640	26	29	10	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56857870--56858813	40	23.6	40	95	0	1613	25	27	18	28	1.98
56870902--56870933	12	2.6	13	90	9	50	50	25	6	18	1.70
56872689--56872861	93	1.9	93	96	0	319	38	21	5	34	1.76
56874818--56875078	46	5.6	45	73	13	181	29	16	29	24	1.97
56876801--56876900	43	2.3	43	87	3	139	32	24	17	27	1.96
56879078--56879287	79	2.7	79	84	1	260	31	12	10	45	1.75
56879078--56879320	79	3.1	79	82	2	240	30	11	9	47	1.73
56883157--56883329	46	3.7	46	75	7	179	29	28	20	20	1.98
56883162--56883332	93	1.8	93	91	0	279	28	29	21	20	1.98
56890280--56890450	93	1.8	93	89	2	272	29	27	19	22	1.98
56890275--56890447	46	3.8	45	75	14	165	30	26	19	23	1.98
56898036--56898140	51	2.1	51	98	0	201	33	4	7	54	1.50
56900302--56900341	21	1.9	21	84	0	53	52	10	17	20	1.72
56903076--56903100	13	1.9	13	100	0	50	72	20	0	8	1.10
56905778--56905806	6	4.8	6	100	0	58	31	17	17	34	1.93
56909473--56909573	33	3.1	33	82	1	123	28	7	24	38	1.84
56917013--56917124	33	3.4	32	78	9	100	33	11	21	33	1.89
56917013--56917077	32	2.0	33	87	3	96	27	10	24	36	1.89
56922982--56923204	47	4.8	48	75	12	171	22	28	20	28	1.98
56923031--56923204	94	1.9	94	87	2	260	21	29	20	28	1.98
56930619--56930791	46	3.7	46	79	9	190	21	28	20	28	1.98
56934535--56934647	43	2.7	42	80	2	127	30	24	15	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56949972--56950206	28	8.4	28	94	1	375	25	11	28	34	1.91
56952597--56952634	20	2.0	18	90	10	58	55	0	39	5	1.23
56955100--56955213	43	2.7	44	81	8	128	33	25	15	25	1.95
56974633--56974667	11	3.2	11	87	0	52	0	14	2	82	0.77
56975934--56975980	3	15.7	3	100	0	94	0	34	0	65	0.93
56979254--56979666	27	15.7	26	73	12	152	38	22	7	31	1.82
56979374--56979611	54	4.4	54	81	2	210	39	23	6	30	1.79
56979401--56979641	107	2.2	108	82	2	297	39	22	7	30	1.82
56979458--56979668	54	3.9	54	85	1	282	39	21	8	30	1.83
56979650--56979979	27	12.3	27	85	2	423	34	20	19	26	1.96
56979459--56979939	81	6.0	78	81	7	357	36	20	14	28	1.92
56979596--56979979	81	4.8	81	85	4	427	34	20	18	26	1.95
56980406--56980470	22	3.0	22	75	8	60	20	23	23	33	1.97
56980629--56980730	27	3.8	27	85	5	116	18	22	21	37	1.94
56980866--56980976	31	3.5	31	85	1	123	18	18	13	50	1.78
56982929--56983319	27	14.7	27	70	15	133	39	20	8	31	1.83
56982929--56983319	54	7.3	53	76	9	244	39	20	8	31	1.83
56983041--56983307	54	4.9	54	83	3	275	39	20	8	31	1.83
56983303--56983685	27	14.3	27	88	0	545	34	20	20	24	1.96
56984335--56984436	27	3.8	27	85	5	116	19	23	20	36	1.95
56984327--56984436	54	2.1	52	82	3	130	19	22	20	38	1.94
56984572--56984652	31	2.6	31	78	2	90	18	17	13	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56989105--56989201	28	3.5	28	91	2	142	31	26	13	27	1.94
56997755--56997789	6	5.8	6	100	0	70	65	0	0	34	0.93
56997999--56998054	27	2.1	27	93	0	94	44	3	3	48	1.37
57005883--57005921	19	2.1	19	95	4	71	28	10	0	61	1.28
57008336--57008415	28	2.9	28	86	1	99	28	21	22	27	1.99
57017502--57017569	2	34.0	2	100	0	136	0	0	50	50	1.00
57029777--57029845	33	2.1	33	91	0	111	53	4	1	40	1.30
57029782--57029835	23	2.2	24	84	15	67	55	3	1	38	1.28
57034851--57034901	19	2.6	19	75	9	50	37	7	9	45	1.67
57034934--57035025	5	18.4	5	100	0	184	59	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356