genome.fa.s11.2.7.7.80.10.50.1000.288.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  288  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93709324--93709493	93	1.8	93	92	0	286	21	20	29	29	1.98
93709328--93709499	46	3.7	46	76	16	183	21	20	28	29	1.98
93714684--93714738	6	8.8	6	92	4	83	81	0	0	18	0.68
93720103--93720127	13	1.9	13	100	0	50	48	8	0	44	1.32
93724730--93724782	6	8.7	6	84	12	72	16	1	1	79	0.92
93726587--93726643	30	1.9	30	85	0	78	26	29	29	14	1.95
93730241--93730401	82	2.0	82	97	0	304	44	19	9	26	1.82
93732002--93732092	30	3.0	30	91	0	137	40	6	21	30	1.79
93732822--93733005	67	2.8	64	77	8	203	29	16	30	23	1.96
93747975--93747999	9	2.8	9	100	0	50	48	24	16	12	1.79
93763015--93763245	39	5.9	39	88	0	336	24	29	25	20	1.99
93768631--93768783	39	3.9	39	92	1	227	23	31	24	20	1.98
93771451--93771481	3	10.3	3	100	0	62	35	0	0	64	0.94
93778696--93778736	22	1.9	22	95	5	75	9	41	29	19	1.83
93795060--93795212	39	3.9	39	92	1	227	23	31	24	20	1.98
93797890--93797920	3	10.3	3	100	0	62	35	0	0	64	0.94
93805137--93805177	22	1.9	22	95	5	75	9	41	29	19	1.83
93825937--93826094	44	3.7	44	72	12	139	32	26	17	23	1.97
93825945--93826101	86	1.8	85	83	4	208	33	25	17	23	1.96
93825937--93826108	43	4.0	44	74	10	133	33	26	16	23	1.96
93842285--93842417	67	2.0	67	100	0	266	30	16	15	37	1.89
93842674--93842713	20	2.0	20	85	4	55	30	2	5	62	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93851659--93851692	9	3.9	9	92	3	52	23	2	0	73	0.97
93851653--93851692	4	9.2	4	86	13	53	25	2	2	70	1.13
93851653--93851692	13	3.1	12	86	13	53	25	2	2	70	1.13
93857933--93857985	23	2.3	23	93	3	90	13	1	45	39	1.54
93858006--93858051	10	4.6	10	89	10	76	21	8	0	69	1.15
93860825--93860908	31	2.7	31	92	1	143	27	26	17	28	1.98
93860932--93861023	42	2.2	42	96	0	166	32	19	15	32	1.93
93861144--93861215	25	3.0	23	80	13	65	29	23	19	27	1.98
93861171--93861240	25	2.8	25	81	12	81	27	24	24	24	2.00
93862050--93862111	27	2.3	27	80	5	72	20	22	19	37	1.95
93862169--93862254	27	3.1	27	80	11	102	36	9	15	39	1.79
93862232--93862382	27	5.6	27	84	4	180	27	7	23	41	1.82
93862257--93862415	54	2.9	54	81	3	187	28	11	22	38	1.88
93862233--93862382	81	1.9	81	87	2	221	27	8	22	42	1.81
93862232--93862415	81	2.3	81	82	5	212	27	10	21	40	1.86
93862257--93862422	27	6.1	27	77	10	124	27	11	23	37	1.89
93862414--93862611	27	7.3	27	83	2	209	40	7	22	29	1.81
93862414--93862600	81	2.3	81	87	0	257	41	6	21	30	1.79
93862458--93862631	81	2.1	81	84	0	222	38	8	21	31	1.83
93867572--93867719	43	3.4	43	95	0	269	29	32	26	11	1.91
93867724--93867901	38	4.7	38	91	4	272	29	25	23	21	1.99
93867724--93867901	75	2.3	75	90	3	277	29	25	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93872063--93872100	19	2.1	18	85	9	51	39	0	5	55	1.23
93872097--93872140	20	2.2	20	83	0	52	72	2	9	15	1.19
93872973--93873043	27	2.6	28	82	8	83	38	1	4	56	1.28
93872984--93873043	27	2.2	27	88	5	86	40	1	3	55	1.27
93873641--93873680	21	1.9	21	84	0	53	57	0	2	40	1.12
93875419--93875458	17	2.5	17	88	8	57	70	7	0	22	1.12
93876017--93876097	33	2.6	32	81	14	91	32	3	2	61	1.26
93878522--93878627	53	2.0	53	98	0	203	33	21	9	34	1.86
93889390--93889489	9	11.8	8	78	15	87	14	3	3	80	0.96
93889391--93889489	16	6.4	15	70	19	71	14	3	3	79	0.96
93889401--93889461	24	2.6	24	81	2	61	14	3	3	78	1.00
93889522--93889579	20	3.0	20	78	14	59	44	1	1	51	1.21
93889611--93889679	20	3.3	20	78	15	70	55	4	0	40	1.20
93889622--93889679	20	2.9	19	85	12	73	56	5	0	37	1.21
93889622--93889672	20	2.5	20	90	6	77	56	3	0	39	1.18
93889658--93889717	12	5.0	12	72	22	54	55	5	1	38	1.32
93889775--93889800	7	3.7	7	100	0	52	53	0	0	46	1.00
93889845--93889889	21	2.1	21	88	8	65	62	4	0	33	1.15
93889843--93889911	32	2.1	33	89	5	104	60	2	0	36	1.11
93890726--93890784	25	2.3	26	82	5	68	8	11	1	77	1.05
93891782--93891869	43	2.0	43	100	0	176	34	6	19	39	1.78
93891910--93892095	43	4.4	42	72	7	133	32	24	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93892061--93892257	98	2.0	98	98	0	385	43	12	6	38	1.68
93896273--93896297	7	3.6	7	100	0	50	60	0	0	40	0.97
93896297--93896336	16	2.4	17	95	4	73	25	0	0	75	0.81
93896297--93896358	9	7.1	9	80	10	51	29	0	1	69	0.98
93896292--93896358	8	7.9	8	79	9	62	31	0	1	67	1.00
93896606--93896692	21	4.0	21	69	21	63	20	0	35	43	1.52
93896619--93896731	22	5.1	22	71	15	81	23	1	31	43	1.64
93896621--93896811	65	2.9	65	77	8	183	25	1	30	43	1.61
93897480--93897602	41	3.0	41	89	8	173	26	25	19	29	1.99
93900320--93900363	21	2.1	21	100	0	88	56	4	6	31	1.46
93901203--93901235	17	2.0	17	88	5	50	39	6	15	39	1.72
93902924--93903127	40	5.1	40	81	7	220	25	27	21	25	1.99
93902945--93903125	79	2.3	80	81	7	208	25	28	20	24	1.99
93906291--93906342	26	2.0	26	96	0	95	46	9	17	26	1.79
93919203--93919360	40	4.0	40	96	0	280	22	20	29	28	1.98
93919218--93919386	80	2.1	80	86	0	230	22	21	28	27	1.99
93932109--93932266	40	4.0	40	94	0	262	23	18	29	28	1.98
93932121--93932292	80	2.1	79	85	4	227	23	20	29	26	1.99
93939338--93939515	27	6.6	26	80	6	169	26	16	28	28	1.97
93939339--93939494	82	1.9	81	86	1	222	26	17	28	27	1.97
93939335--93939515	82	2.2	81	82	1	218	26	17	28	28	1.97
93944705--93944927	94	2.4	95	84	2	281	28	17	29	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93944719--93944928	47	4.5	46	72	8	154	26	17	30	25	1.97
93951146--93951212	15	4.8	14	71	17	50	50	23	1	23	1.57
93951146--93951198	26	2.0	27	85	3	72	50	22	1	24	1.59
93952611--93952793	96	1.9	94	79	8	199	42	8	6	42	1.60
93955976--93956029	11	5.0	11	86	4	74	18	46	5	29	1.72
93956568--93956623	18	3.1	18	89	0	85	35	17	8	37	1.82
93963301--93963386	43	2.0	43	100	0	172	41	11	9	37	1.74
93965700--93965751	24	2.2	24	89	0	77	55	9	1	32	1.43
93967670--93967721	24	2.2	24	89	0	77	55	9	1	32	1.43
93972213--93972258	23	2.0	23	100	0	92	47	17	4	30	1.67
93987546--93987587	19	2.3	19	95	4	77	38	14	9	38	1.78
93997357--93997391	15	2.3	16	85	14	56	80	0	0	20	0.72
94001296--94001488	40	4.8	40	93	3	307	25	26	23	23	2.00
94008532--94008755	40	5.6	40	89	5	312	25	27	23	24	2.00
94011179--94011208	12	2.4	13	88	11	53	63	0	0	36	0.95
94012164--94012201	17	2.2	17	86	9	51	31	7	0	60	1.25
94012465--94012515	26	2.0	26	88	0	75	43	5	7	43	1.57
94012517--94012559	17	2.5	18	85	7	54	46	4	4	44	1.45
94016918--94016950	15	2.2	15	89	10	50	87	0	0	12	0.53
94019961--94020012	26	2.1	24	82	7	59	30	5	3	59	1.39
94028553--94028592	19	2.0	20	90	4	64	45	15	10	30	1.78
94032540--94032565	4	6.5	4	100	0	52	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94036222--94036366	37	3.9	37	94	0	227	27	31	17	24	1.97
94036577--94036965	47	8.1	47	86	5	517	26	30	12	30	1.93
94036689--94036766	25	3.2	25	63	17	65	29	33	10	26	1.89
94036577--94036965	94	4.0	98	89	5	578	26	30	12	30	1.93
94039154--94039332	85	2.1	85	98	0	349	26	27	8	37	1.85
94051259--94051323	33	2.0	33	100	0	130	40	15	3	41	1.63
94051715--94051943	45	5.1	44	80	3	172	34	22	18	24	1.96
94051805--94051943	46	3.1	45	81	4	154	32	23	19	24	1.98
94057217--94057514	40	7.5	40	85	4	356	25	27	22	24	2.00
94059396--94059575	28	6.5	28	93	2	276	26	14	28	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356