Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  155  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49909948--49910160
94
2.3
93
81
5
232
29
16
30
23
1.96
49921491--49921532
16
2.7
15
85
7
57
45
2
0
52
1.13
49921489--49921537
22
2.3
22
86
13
68
46
2
0
51
1.12
49922261--49922314
25
2.2
24
83
9
65
33
5
3
57
1.40
49938069--49938107
21
1.9
20
89
5
60
33
0
20
46
1.51
49940984--49941583
47
12.6
47
92
2
930
29
29
8
33
1.86
49940984--49941583
96
6.3
94
91
2
930
29
29
8
33
1.86
49940984--49941583
143
4.2
142
94
1
961
29
29
8
33
1.86
49943193--49943217
13
1.9
13
100
0
50
36
16
16
32
1.90
49945611--49945831
40
5.6
40
80
5
252
26
25
22
25
2.00
49945611--49945831
120
1.9
118
86
5
320
26
25
22
25
2.00
49951781--49951823
19
2.4
19
88
7
63
53
4
11
30
1.57
49954726--49956061
671
2.0
671
94
0
2334
30
14
23
31
1.94
49958712--49958880
45
3.9
45
82
9
183
25
20
27
26
1.99
49965974--49966017
20
2.2
20
95
0
79
27
25
15
31
1.96
49970940--49971044
48
2.2
48
89
0
156
27
20
24
26
1.99
49978577--49978618
21
2.0
21
90
0
66
33
19
23
23
1.97
49980353--49980404
27
2.0
26
84
3
68
34
21
26
17
1.95
49982830--49983061
49
4.7
49
81
3
230
30
26
17
25
1.97
49990179--49990354
46
3.8
46
79
12
216
20
21
29
28
1.98
49990176--49990347
93
1.8
93
96
0
317
20
21
29
27
1.98
49996793--49996963
93
1.8
92
91
1
279
22
19
29
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49996797--49996970
46
3.8
46
75
11
176
21
19
29
29
1.98
50000141--50000219
27
2.9
28
79
5
81
34
18
22
24
1.97
50000141--50000223
29
3.0
28
78
3
87
34
19
21
24
1.96
50000879--50000935
27
2.1
27
80
6
62
22
24
22
29
1.99
50002250--50002428
48
3.8
48
73
10
172
28
22
20
27
1.99
50019551--50019659
43
2.6
42
79
5
121
31
15
23
29
1.95
50025174--50025218
11
4.0
11
86
11
56
77
2
4
15
1.02
50025174--50025215
17
2.4
18
88
4
59
76
2
4
16
1.07
50025174--50025215
6
7.2
6
83
5
50
76
2
4
16
1.07
50029581--50029834
39
6.5
40
84
7
317
24
23
27
24
2.00
50037725--50037979
40
6.5
40
86
4
342
25
23
27
24
2.00
50043043--50043135
28
3.3
28
95
3
161
34
27
7
30
1.85
50043235--50043324
28
3.2
26
76
10
90
20
23
24
32
1.98
50043235--50043316
27
3.0
28
78
7
96
20
24
23
31
1.98
50052523--50052637
29
4.0
29
77
5
126
26
30
15
26
1.96
50052525--50052637
58
2.0
57
84
5
147
26
30
15
27
1.96
50052852--50052910
24
2.5
24
88
0
82
11
22
16
49
1.78
50054122--50054157
16
2.2
17
90
5
56
25
0
16
58
1.38
50055239--50055264
13
2.0
13
100
0
52
23
38
7
30
1.83
50056966--50057080
29
4.0
29
81
1
142
26
30
14
28
1.95
50056968--50057080
58
2.0
57
87
1
163
25
30
15
29
1.95
50057298--50057352
24
2.3
24
87
0
74
9
18
21
50
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50058575--50058608
16
2.1
17
94
5
61
5
0
35
58
1.22
50064816--50065085
40
6.8
40
95
0
441
23
27
21
27
1.99
50080868--50081052
40
4.7
40
82
7
200
23
23
27
25
2.00
50080921--50081085
79
2.1
79
84
6
210
25
21
27
25
1.99
50088961--50089145
40
4.6
39
80
7
169
24
22
27
25
2.00
50089014--50089178
79
2.1
79
83
6
201
26
20
27
26
1.99
50091506--50091539
18
1.9
18
88
5
52
41
20
8
29
1.82
50099409--50099498
44
2.0
45
86
2
128
24
13
22
40
1.90
50104302--50104338
19
1.9
19
100
0
74
37
10
10
40
1.75
50125210--50125557
40
8.7
40
97
0
624
28
20
28
22
1.98
50127610--50127736
48
2.6
48
83
2
157
27
31
14
25
1.95
50127644--50127740
48
2.0
48
91
0
158
26
31
14
26
1.95
50133750--50133787
19
2.1
19
90
5
60
18
36
23
21
1.95
50135179--50135263
42
2.0
42
86
0
116
34
28
11
25
1.91
50139253--50139402
41
3.7
41
83
1
203
28
27
22
21
1.99
50147109--50147255
68
2.2
68
94
0
258
46
20
9
23
1.79
50148130--50148266
39
3.5
40
91
4
215
29
31
21
17
1.96
50150251--50150291
19
2.2
19
90
0
64
39
9
0
51
1.35
50150685--50150710
6
4.3
6
100
0
52
84
0
0
15
0.62
50153371--50153517
68
2.2
68
97
0
276
46
19
9
24
1.80
50154365--50154526
39
4.1
39
83
5
130
30
29
21
18
1.97
50154392--50154526
39
3.5
39
86
4
191
29
28
22
19
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50156516--50156556
19
2.2
19
90
0
64
39
9
0
51
1.35
50157161--50157212
25
2.1
25
85
3
70
46
3
0
50
1.20
50166339--50166423
38
2.2
40
85
4
111
51
5
2
40
1.39
50172297--50172846
46
12.0
46
92
1
863
22
24
15
37
1.93
50174988--50175036
20
2.5
20
86
6
64
57
6
0
36
1.24
50174988--50175047
21
2.8
21
80
10
68
56
8
0
35
1.29
50178849--50178985
40
3.4
40
83
2
150
24
14
25
35
1.94
50178973--50179042
28
2.5
28
92
0
113
25
14
31
28
1.95
50185583--50185761
46
3.9
46
77
5
173
31
26
18
22
1.98
50192336--50192513
28
6.5
28
93
2
281
26
12
28
32
1.93
50192336--50192513
55
3.2
55
93
1
286
26
12
28
32
1.93
50192336--50192513
83
2.2
82
92
1
293
26
12
28
32
1.93
50198198--50198259
24
2.6
24
85
7
81
33
25
16
24
1.95
50202989--50203117
46
2.8
46
95
0
222
19
21
29
29
1.98
50205995--50206065
15
4.7
15
76
11
65
15
18
9
56
1.66
50208464--50208592
46
2.8
46
89
0
195
20
22
27
28
1.99
50215779--50215860
39
2.1
39
95
0
146
23
31
24
20
1.98
50220806--50220845
19
2.1
19
100
0
80
37
25
5
32
1.77
50223462--50223500
17
2.2
17
86
9
51
10
28
12
48
1.74
50225968--50226048
24
3.3
23
77
8
72
37
17
24
20
1.94
50233779--50233950
40
4.3
40
86
5
224
26
26
22
25
2.00
50233779--50234003
80
2.8
81
80
9
266
25
26
22
24
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50233781--50234003
119
1.9
120
81
6
274
25
26
22
25
2.00
50235128--50235247
56
2.1
56
96
0
222
22
22
9
45
1.80
50237023--50237177
40
3.9
40
82
8
190
22
29
24
23
1.99
50245274--50245321
22
2.3
21
80
16
55
37
0
8
54
1.31
50245277--50245316
21
1.9
22
85
10
57
32
0
7
60
1.25
50251133--50251170
19
2.0
20
89
5
60
39
0
5
55
1.23
50259423--50259477
22
2.5
22
80
19
62
47
1
1
49
1.23
50259422--50259477
23
2.4
23
77
22
64
48
1
1
48
1.22
50263494--50263526
11
3.1
11
86
8
50
87
0
12
0
0.53
50263497--50263532
16
2.2
17
90
5
56
83
0
16
0
0.65
50266304--50266337
18
1.9
17
88
5
50
26
17
11
44
1.83
50270067--50270150
25
3.4
25
81
8
118
61
0
0
38
0.96
50270055--50270153
23
4.3
23
77
7
103
61
1
0
37
1.03
50270282--50270323
21
2.0
22
85
4
59
59
0
33
7
1.25
50270428--50270479
25
2.1
25
82
3
61
34
30
5
28
1.81
50270444--50270497
26
2.1
26
96
3
101
27
33
3
35
1.75
50270452--50270523
26
2.9
24
85
10
83
30
29
5
34
1.80
50273723--50274161
47
9.4
47
91
6
682
33
7
31
28
1.84
50273725--50274144
134
3.1
134
90
7
673
33
7
30
28
1.85
50275215--50275242
10
2.8
10
100
0
56
92
0
7
0
0.37
50279724--50279765
21
2.0
22
85
4
59
59
0
33
7
1.25
50279870--50279921
25
2.1
25
82
3
61
32
28
7
30
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50279886--50279963
26
3.1
26
83
8
92
28
29
5
37
1.79
50280425--50280466
14
3.0
14
83
13
59
52
0
2
45
1.13
50281206--50281253
17
2.7
18
80
3
53
25
2
2
70
1.09
50282814--50282991
46
3.8
46
77
7
207
28
28
21
21
1.99
50282821--50282992
93
1.8
93
93
0
299
27
28
22
22
1.99
50283413--50283472
30
2.0
30
90
0
93
30
25
8
36
1.85
50290411--50290583
46
3.7
46
77
11
183
30
26
19
23
1.98
50292442--50292502
6
9.5
6
81
13
68
0
24
0
75
0.80
50292451--50292503
28
1.9
28
96
3
99
0
28
0
71
0.86
50294696--50294766
27
2.7
27
93
2
117
25
2
7
64
1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356