genome.fa.s11.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  104  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32787565--32787643	37	2.1	37	90	0	122	25	31	18	24	1.98
32787818--32787898	22	3.5	23	66	11	67	30	28	9	30	1.89
32787841--32787923	25	3.5	24	66	11	71	33	27	4	33	1.78
32787761--32787983	47	4.7	47	96	1	392	30	29	8	30	1.88
32791507--32791847	40	8.5	40	84	3	384	24	27	22	24	2.00
32792153--32792231	29	2.7	29	86	5	106	27	32	15	24	1.95
32794128--32794206	37	2.1	37	90	0	122	25	31	18	24	1.98
32794324--32794548	47	4.7	48	95	1	373	30	29	8	31	1.88
32794324--32794547	96	2.3	95	93	3	369	30	29	8	31	1.88
32799505--32800014	48	10.6	47	74	10	228	25	29	18	27	1.98
32799506--32800024	96	5.4	95	80	5	467	25	29	18	26	1.98
32799506--32800024	144	3.6	142	84	4	589	25	29	18	26	1.98
32804881--32804987	43	2.5	42	70	8	108	28	16	25	29	1.97
32824068--32824158	35	2.7	34	88	6	132	63	7	9	18	1.48
32824145--32824231	40	2.2	40	89	2	129	59	10	1	28	1.37
32829522--32829551	15	2.0	15	100	0	60	33	40	6	20	1.78
32829659--32829870	46	4.5	46	77	12	168	25	28	17	28	1.98
32832213--32832247	18	2.0	18	88	5	54	28	14	20	37	1.91
32840371--32840452	30	2.8	30	90	1	130	30	26	12	30	1.92
32844798--32844886	30	3.0	30	90	3	137	28	28	13	30	1.94
32851476--32851626	47	3.2	45	74	10	126	24	27	18	29	1.98
32851464--32851593	47	2.8	48	77	10	135	25	29	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32854815--32854865	25	2.0	25	92	0	84	19	23	13	43	1.87
32858217--32858311	44	2.2	44	83	7	115	24	20	24	31	1.98
32859973--32860025	26	2.0	26	82	7	63	26	13	20	39	1.89
32861500--32861607	26	4.2	26	91	0	171	37	23	6	32	1.80
32861500--32861607	52	2.1	52	94	0	189	37	23	6	32	1.80
32863734--32863782	19	2.6	17	81	12	53	4	8	16	71	1.26
32865206--32865281	37	2.1	37	100	0	152	23	28	18	28	1.98
32865214--32865292	37	2.1	37	92	0	131	26	24	21	27	1.99
32868030--32868093	32	2.0	32	96	0	119	31	20	9	39	1.84
32872064--32872161	19	5.2	19	86	7	137	39	10	15	34	1.81
32872070--32872161	36	2.4	37	89	7	132	40	10	14	34	1.81
32874673--32874820	40	3.7	40	84	0	188	25	21	24	28	1.99
32874673--32874820	80	1.9	80	86	0	215	25	21	24	28	1.99
32875238--32875282	14	3.2	14	80	0	54	26	0	22	51	1.49
32875301--32875353	21	2.5	20	79	8	61	24	0	24	50	1.49
32875341--32875461	21	5.6	22	71	12	83	20	0	38	41	1.53
32875341--32875460	7	16.9	7	72	10	55	20	0	37	41	1.53
32876020--32876073	18	3.0	18	86	0	81	11	31	1	55	1.45
32878925--32878955	15	2.0	16	93	6	55	51	3	6	38	1.44
32883583--32883667	31	2.8	31	78	8	111	22	24	18	34	1.96
32883887--32883955	25	2.8	25	88	2	95	27	23	21	27	1.99
32883874--32883956	25	3.4	24	82	11	89	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32884400--32884439	21	2.0	21	90	5	64	22	35	20	22	1.96
32886215--32886250	17	2.1	17	94	0	63	27	11	13	47	1.77
32889215--32889303	27	3.3	27	84	6	83	41	16	10	31	1.82
32889316--32889498	27	6.6	27	83	7	204	28	22	9	39	1.85
32889323--32889490	87	1.9	87	86	2	239	27	23	9	39	1.85
32889408--32889527	54	2.2	54	81	0	150	32	19	9	39	1.83
32889423--32889702	27	10.3	27	78	6	152	36	18	9	35	1.83
32889491--32889709	27	8.0	27	78	5	190	39	17	9	33	1.82
32889728--32889851	54	2.3	54	78	8	119	35	18	23	22	1.96
32889760--32889851	27	3.4	27	84	3	123	33	19	26	20	1.96
32890652--32890827	26	6.8	26	90	0	273	27	23	22	25	2.00
32890652--32890827	78	2.3	78	94	1	309	27	23	22	25	2.00
32890972--32891063	42	2.2	42	90	0	139	30	14	20	34	1.92
32891087--32891194	31	3.5	31	81	7	125	29	18	24	27	1.98
32895235--32895273	19	2.1	19	100	0	78	56	10	0	33	1.33
32905362--32905411	25	2.0	25	84	7	66	52	10	0	38	1.35
32911648--32911739	48	1.9	48	90	0	148	18	18	26	36	1.94
32911650--32911778	48	2.7	48	82	7	138	19	19	27	33	1.96
32921802--32921835	9	3.8	9	96	0	59	20	0	20	58	1.39
32922232--32922432	43	4.7	43	83	3	226	26	14	24	33	1.94
32923768--32923853	42	2.0	42	95	0	154	39	6	18	34	1.78
32924817--32925053	48	5.0	47	78	4	224	24	28	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32924819--32925050	96	2.4	95	82	7	265	24	28	19	28	1.98
32925438--32925705	70	3.8	70	90	0	430	38	17	13	31	1.88
32928993--32929069	38	2.0	38	100	0	154	36	18	24	20	1.95
32931063--32931175	48	2.4	48	84	0	154	19	15	25	39	1.90
32933853--32934056	44	4.7	44	79	14	235	28	26	20	24	1.99
32933853--32934069	43	5.0	43	76	16	216	29	26	19	23	1.98
32933853--32934054	87	2.3	87	95	0	359	29	26	20	24	1.99
32936510--32936542	17	2.1	16	88	11	50	30	0	0	69	0.88
32936554--32936618	35	1.9	33	84	12	87	29	0	7	63	1.22
32936621--32936678	25	2.4	25	85	8	75	24	0	5	70	1.07
32944735--32944807	36	2.0	36	86	0	101	21	24	13	39	1.90
32944763--32944820	27	2.2	26	84	3	71	20	20	15	43	1.88
32944771--32944825	26	2.1	27	89	3	85	20	20	20	40	1.92
32945216--32945306	27	3.4	27	90	0	146	37	16	19	26	1.93
32947423--32947476	24	2.2	25	77	9	58	31	1	48	18	1.59
32948728--32948822	27	3.5	27	85	0	136	35	15	22	26	1.94
32948966--32949036	36	2.0	36	91	0	115	22	25	32	19	1.98
32951329--32951492	43	3.8	42	77	11	154	34	25	15	25	1.94
32951348--32951491	44	3.4	42	77	13	143	34	24	15	25	1.95
32952489--32952591	37	2.8	37	95	0	179	25	32	19	23	1.98
32952732--32953062	48	6.9	48	96	0	581	30	28	6	34	1.82
32961934--32961988	27	2.0	27	96	0	101	50	7	12	29	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32962953--32963558	147	4.1	147	88	1	870	44	9	5	41	1.58
32963957--32963989	6	5.7	6	92	7	50	75	0	24	0	0.80
32964391--32964491	42	2.4	42	83	3	123	41	18	15	23	1.89
32964953--32964995	21	2.1	21	83	12	54	0	9	9	81	0.88
32970535--32970648	39	2.9	39	94	1	192	26	25	28	19	1.98
32986368--32986423	26	2.2	26	93	0	94	37	23	7	32	1.82
33001585--33001692	26	4.2	26	93	0	189	36	24	7	32	1.83
33004159--33004208	26	1.9	26	84	15	68	46	16	8	30	1.75
33005824--33005902	31	2.5	31	87	0	122	27	27	16	27	1.97
33005926--33006017	42	2.2	42	92	0	148	34	21	14	29	1.93
33006162--33006311	26	5.8	26	90	0	230	28	22	22	27	1.99
33006162--33006311	52	2.9	52	93	1	257	28	22	22	27	1.99
33006162--33006311	78	1.9	77	93	1	255	28	22	22	27	1.99
33007114--33007196	27	3.1	27	91	5	125	24	26	18	31	1.97
33007255--33007391	56	2.5	54	80	8	143	32	6	18	43	1.76
33007236--33007473	27	8.7	27	77	4	183	31	7	19	41	1.80
33007466--33007649	27	6.8	27	89	0	233	40	6	23	29	1.80
33007439--33007598	81	2.0	81	79	0	176	41	7	20	30	1.79
33007656--33007744	27	3.3	27	84	3	108	33	10	15	40	1.81
33009952--33010030	31	2.5	31	89	0	122	27	27	15	29	1.96
33010054--33010145	42	2.2	42	92	0	148	34	21	14	29	1.93
33010289--33010441	26	5.8	26	87	5	200	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33010289--33010441	55	2.9	51	87	8	218	28	22	20	28	1.99
33011244--33011324	27	3.0	26	90	3	108	23	25	19	30	1.98
33011367--33011604	27	8.7	27	76	3	172	32	8	19	39	1.82
33011596--33011801	27	7.6	27	88	0	250	39	8	23	28	1.84
33017697--33017727	2	15.5	2	93	0	53	48	3	0	48	1.17
33018485--33018662	27	6.6	27	83	3	205	26	15	28	29	1.96
33018486--33018641	82	1.9	81	88	3	233	26	15	28	29	1.96
33018482--33018662	82	2.2	81	83	2	229	27	15	27	29	1.96
33026496--33026673	27	6.6	27	82	3	196	27	15	27	29	1.96
33026497--33026652	82	1.9	81	86	3	224	27	15	27	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356