genome.fa.s11.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  137  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43895342--43895368	13	2.1	13	100	0	54	14	37	33	14	1.88
43904219--43904251	17	1.9	17	88	11	50	45	30	0	24	1.53
43914053--43914082	14	2.1	15	93	6	53	50	20	0	30	1.49
43919137--43919198	25	2.5	25	87	10	83	33	14	6	45	1.71
43919680--43919759	32	2.5	32	87	0	115	10	25	32	32	1.89
43922320--43922417	28	3.5	28	87	2	126	32	27	13	26	1.93
43924900--43925023	43	2.9	43	78	11	119	33	24	16	26	1.96
43930550--43930618	23	3.0	21	68	31	61	34	17	1	46	1.57
43930543--43930636	47	2.0	47	87	4	136	38	17	2	42	1.61
43931687--43931743	20	2.8	20	79	15	62	52	1	3	42	1.28
43931858--43931928	34	2.1	34	82	10	83	45	1	0	53	1.09
43931898--43931938	20	2.0	21	85	4	57	46	0	0	53	1.00
43935977--43936153	46	3.9	44	74	11	158	21	19	29	29	1.98
43935974--43936146	93	1.9	93	91	0	283	21	20	30	28	1.98
43939098--43939133	15	2.4	15	90	0	54	13	19	11	55	1.68
43939105--43939172	15	4.6	15	75	8	59	10	17	16	55	1.67
43941561--43941736	46	3.8	45	76	11	178	20	19	30	30	1.97
43941557--43941729	93	1.9	93	91	2	285	20	19	30	28	1.97
43944922--43945379	47	9.6	47	89	3	691	28	29	8	33	1.86
43944922--43945379	96	4.8	96	96	0	830	28	29	8	33	1.86
43955651--43955676	13	2.0	13	100	0	52	53	7	15	23	1.67
43956743--43956918	89	2.0	89	91	0	289	54	6	28	9	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43965420--43965471	26	2.0	26	88	3	79	50	3	7	38	1.50
43965422--43965479	16	3.4	17	78	9	64	46	3	6	43	1.47
43965594--43965650	7	7.7	7	81	11	60	28	50	1	19	1.57
43965594--43965680	15	5.9	14	68	11	57	27	48	2	21	1.62
43965611--43965681	7	9.6	7	75	11	52	26	46	2	23	1.66
43965621--43965716	37	2.6	36	79	14	97	33	41	2	22	1.66
43965718--43965757	21	1.9	21	84	0	53	45	22	0	32	1.53
43965836--43965911	29	2.7	28	82	8	91	47	27	0	25	1.52
43965740--43965908	7	23.9	7	75	8	92	45	31	0	23	1.53
43965740--43965908	14	11.9	14	76	5	106	45	31	0	23	1.53
43965845--43965919	14	5.3	14	75	3	60	49	24	1	25	1.58
43966339--43966446	40	2.7	39	80	11	137	26	25	19	28	1.99
43966244--43966883	154	4.1	154	82	3	714	31	21	19	28	1.97
43966492--43966597	40	2.7	40	82	4	108	26	20	25	27	1.99
43966522--43966597	40	1.9	40	86	5	109	26	21	26	26	1.99
43966658--43966751	40	2.4	39	87	1	125	38	25	13	22	1.91
43966244--43966883	308	2.1	310	84	3	835	31	21	19	28	1.97
43975986--43976027	22	2.0	22	85	4	59	50	0	4	45	1.23
43976134--43976194	26	2.3	26	88	5	88	36	4	18	40	1.72
43979242--43979327	35	2.5	35	83	5	95	26	20	27	24	1.99
43986366--43986426	26	2.3	26	80	0	68	34	16	18	31	1.93
43989452--43989499	23	2.1	23	84	0	60	22	16	18	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43989643--43989738	33	2.9	33	82	0	111	23	23	22	29	1.99
43996061--43996090	10	3.0	10	95	0	51	13	26	40	20	1.89
43998454--43998559	33	3.2	33	91	0	167	23	20	26	29	1.99
44002251--44002293	21	2.0	22	86	4	61	44	2	0	53	1.13
44006097--44006274	27	6.6	27	84	3	205	29	28	15	26	1.96
44006118--44006273	82	1.9	81	88	3	233	29	28	15	26	1.96
44014651--44014768	27	4.4	28	78	6	91	40	19	8	31	1.81
44014646--44014768	54	2.3	54	78	7	133	39	19	8	32	1.81
44014746--44014956	27	7.8	27	88	0	278	28	23	7	39	1.82
44014692--44014993	81	3.7	82	77	6	256	32	22	7	37	1.83
44014935--44015074	54	2.6	54	84	4	183	39	23	7	30	1.81
44014935--44015187	81	3.1	79	73	10	215	38	21	8	31	1.84
44014881--44015160	27	10.3	27	79	6	156	37	20	8	33	1.82
44015218--44015309	27	3.4	27	87	3	123	34	20	25	19	1.96
44016112--44016260	26	5.8	26	91	2	248	26	24	23	26	2.00
44016112--44016260	51	2.9	51	98	1	289	26	24	23	26	2.00
44016112--44016260	77	1.9	77	91	2	246	26	24	23	26	2.00
44016514--44016592	31	2.5	31	89	0	131	27	17	26	27	1.98
44022658--44022792	40	3.4	40	89	3	202	23	28	23	24	2.00
44051106--44051251	48	3.0	48	83	0	166	23	18	27	30	1.98
44058645--44058772	43	3.0	43	82	4	143	32	24	14	28	1.94
44060204--44060267	32	2.0	32	96	0	119	51	15	12	20	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44064200--44064228	15	1.9	15	100	0	58	41	0	20	37	1.53
44066191--44066330	57	2.4	58	84	3	176	30	17	19	32	1.95
44074302--44074367	32	2.1	32	100	0	132	33	15	10	40	1.81
44076266--44076501	101	2.4	97	80	8	228	35	16	23	24	1.94
44076309--44076469	47	3.3	47	67	14	126	38	11	22	26	1.89
44076309--44076539	101	2.3	101	90	0	345	37	13	22	26	1.91
44076371--44076659	54	5.5	53	72	11	202	36	16	22	24	1.94
44076474--44076659	55	3.5	53	78	6	162	36	18	22	23	1.95
44076528--44076671	53	2.7	53	76	6	139	36	18	22	22	1.95
44078046--44078086	13	3.2	13	82	0	55	19	31	34	14	1.92
44079546--44079730	79	2.3	81	82	7	218	25	27	22	24	2.00
44079546--44079730	40	4.7	40	80	7	216	25	27	22	24	2.00
44088613--44088711	28	3.5	29	86	9	109	29	28	14	28	1.95
44089161--44089186	12	2.2	12	100	0	52	42	0	7	50	1.31
44100160--44100335	47	3.6	47	75	13	192	36	11	23	27	1.90
44100210--44100521	54	5.9	55	74	12	267	35	16	24	24	1.95
44100163--44100386	101	2.2	102	92	1	371	36	13	23	26	1.92
44100314--44100510	55	3.6	54	81	7	238	35	18	24	21	1.95
44103836--44104011	84	2.1	84	93	0	298	28	7	15	48	1.72
44108167--44108298	63	2.1	65	97	2	250	20	18	6	54	1.65
44123373--44123423	5	10.0	5	95	4	93	39	0	0	60	0.97
44125020--44125121	48	2.1	48	98	0	195	42	0	17	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44129793--44129831	20	2.0	20	89	0	60	30	5	5	58	1.41
44137182--44137239	25	2.3	24	82	11	64	31	18	25	24	1.98
44143026--44143210	40	4.6	40	79	6	212	22	27	24	24	2.00
44145144--44145183	20	2.0	20	90	0	62	50	2	17	30	1.59
44151416--44151442	3	9.0	3	100	0	54	0	33	0	66	0.92
44153088--44153263	46	3.8	46	75	10	169	21	21	28	28	1.98
44153084--44153256	93	1.9	93	88	0	265	21	21	28	27	1.99
44159278--44159317	21	2.0	21	90	5	64	12	40	27	20	1.88
44166140--44166268	43	2.9	44	71	13	127	27	20	23	29	1.99
44176423--44176745	48	6.7	48	88	3	429	22	16	32	27	1.96
44181155--44181289	39	3.4	39	74	10	114	28	26	20	25	1.99
44182852--44182882	5	6.0	5	92	7	53	61	0	0	38	0.96
44191459--44191497	16	2.5	15	84	12	51	38	0	0	61	0.96
44191469--44191514	23	2.0	22	87	4	65	45	0	2	52	1.13
44193005--44193077	37	1.9	39	83	5	96	58	0	6	34	1.24
44194370--44194453	42	2.0	42	88	0	123	50	5	2	41	1.40
44197925--44197963	19	2.1	19	100	0	78	25	20	5	48	1.70
44201561--44201606	24	1.9	24	86	0	65	50	2	4	43	1.34
44202451--44202576	60	2.1	60	85	1	164	40	12	8	38	1.74
44210361--44210458	27	3.5	28	90	2	135	26	13	28	31	1.94
44210389--44210471	27	3.0	27	87	5	96	30	12	25	32	1.92
44210361--44210472	28	4.0	27	83	6	98	28	12	25	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44215416--44215576	46	3.5	44	78	9	117	26	18	29	26	1.98
44222096--44222141	20	2.5	17	78	18	56	32	19	8	39	1.82
44222101--44222145	20	2.2	20	100	0	90	35	17	11	35	1.86
44224697--44224766	32	2.2	32	97	0	131	45	24	5	24	1.74
44225199--44225352	42	3.6	42	82	8	188	31	24	14	29	1.94
44238795--44238826	13	2.3	15	89	10	50	68	0	9	21	1.17
44240103--44240148	20	2.5	17	78	18	56	32	19	8	39	1.82
44240108--44240152	20	2.2	20	100	0	90	35	17	11	35	1.86
44243308--44243530	40	5.6	40	91	1	349	22	28	20	28	1.99
44251321--44251543	40	5.6	40	91	0	356	22	28	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356