genome.fa.s11.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  141  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45445726--45445850	45	2.6	45	81	10	128	33	16	22	27	1.96
45448613--45448858	18	13.3	18	66	13	106	36	14	11	37	1.82
45449032--45449175	45	3.2	45	89	0	207	38	21	19	20	1.93
45449584--45449630	5	9.2	5	90	4	67	38	23	0	38	1.55
45450934--45450964	4	7.5	4	92	7	53	0	29	0	70	0.87
45451055--45451107	22	2.3	23	83	3	63	33	5	7	52	1.53
45465339--45465394	27	2.0	29	82	6	71	16	10	12	60	1.58
45465804--45465856	27	1.9	28	84	3	72	58	15	7	18	1.60
45481717--45481747	12	2.6	12	100	0	62	0	32	6	61	1.21
45482229--45482274	18	2.6	18	86	3	67	15	34	36	13	1.86
45485103--45485136	17	2.0	17	88	11	52	41	5	11	41	1.66
45486451--45486486	19	1.9	19	88	5	56	36	8	2	52	1.46
45487127--45487261	48	2.8	48	91	0	225	32	14	23	28	1.95
45487313--45487422	34	3.3	34	76	1	123	40	15	14	29	1.87
45489674--45489817	54	2.6	55	85	6	186	54	9	0	36	1.37
45506372--45506425	12	4.3	12	73	17	56	53	1	0	44	1.11
45506354--45506401	20	2.4	19	76	10	51	56	2	0	41	1.11
45508618--45508677	26	2.3	26	88	2	86	30	8	11	50	1.68
45515188--45515405	46	4.7	46	75	13	144	22	29	18	28	1.98
45515188--45515405	94	2.4	90	81	7	233	22	29	18	28	1.98
45519224--45519384	46	3.5	44	80	8	119	29	19	28	22	1.98
45528387--45528609	119	1.9	120	81	6	274	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45528366--45528609	40	6.1	40	81	6	264	25	27	21	25	1.99
45536271--45536495	40	5.7	40	85	5	269	25	28	21	24	1.99
45536273--45536495	119	1.9	120	83	6	292	25	27	21	24	1.99
45541167--45541217	16	3.2	16	97	0	93	27	5	19	47	1.73
45548786--45548954	90	1.9	90	81	0	203	28	19	23	28	1.98
45552633--45553335	47	14.3	47	82	11	747	32	8	29	29	1.87
45552628--45553033	96	4.2	95	94	2	663	33	8	28	30	1.86
45552633--45553033	145	2.8	145	95	0	716	33	8	28	29	1.86
45552972--45553101	66	1.9	67	90	3	208	32	11	27	28	1.92
45552876--45553197	162	2.0	163	95	1	574	32	9	28	29	1.88
45552731--45553335	307	2.0	305	95	0	1075	32	8	29	29	1.87
45552925--45553150	115	2.0	114	92	3	382	32	10	28	29	1.90
45552829--45553244	211	2.0	209	95	0	742	32	9	28	29	1.88
45555556--45555863	40	7.7	40	90	1	415	25	22	26	25	2.00
45559156--45559711	47	11.3	47	84	10	702	33	8	29	28	1.87
45559156--45559711	96	5.7	96	85	10	748	33	8	29	28	1.87
45559319--45559711	143	2.8	143	93	1	657	32	8	30	28	1.88
45563253--45563311	28	2.1	28	96	0	109	49	16	0	33	1.47
45563749--45564531	398	2.0	385	89	5	1187	29	22	16	31	1.96
45565487--45565790	40	7.7	40	89	4	422	25	26	21	25	1.99
45566868--45566894	14	1.9	14	100	0	54	0	7	3	88	0.61
45567286--45567329	21	2.0	22	82	4	54	34	6	0	59	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45567523--45567605	20	4.2	20	66	18	59	33	4	2	59	1.32
45567633--45567665	13	2.5	13	95	0	57	33	3	0	63	1.10
45568284--45568340	29	2.0	29	92	0	96	24	8	8	57	1.57
45568389--45568413	2	12.5	2	100	0	50	48	0	0	52	1.00
45576554--45576702	19	7.9	19	83	11	184	37	14	9	38	1.79
45576577--45576702	35	3.5	36	83	7	166	37	14	10	38	1.80
45576577--45576702	54	2.3	54	94	0	225	37	14	10	38	1.80
45576609--45576700	17	5.5	15	83	8	60	36	15	9	38	1.80
45579524--45580308	416	1.9	417	95	0	1437	32	17	18	30	1.95
45581242--45581340	30	3.3	30	88	0	153	18	4	49	28	1.65
45581616--45581732	44	2.7	44	81	15	111	58	2	4	34	1.31
45581616--45581748	25	6.0	24	70	22	87	57	2	4	35	1.31
45581656--45581750	9	9.6	10	70	17	65	61	1	3	34	1.19
45581808--45581853	23	2.0	23	83	8	58	56	4	2	36	1.31
45583741--45583839	30	3.3	30	88	0	153	18	4	49	28	1.65
45584114--45584215	44	2.3	43	80	16	109	57	2	4	34	1.35
45584305--45584349	22	2.0	22	83	8	56	55	4	2	37	1.32
45584717--45584787	35	2.0	35	81	5	81	29	2	26	40	1.70
45585291--45585316	11	2.4	11	100	0	52	30	0	0	69	0.89
45608359--45608401	19	2.3	19	91	0	68	39	2	11	46	1.53
45612599--45612659	28	2.2	28	96	0	113	27	11	13	47	1.77
45615536--45615831	161	1.8	161	97	0	565	31	22	7	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45616136--45616181	18	2.6	18	92	0	74	45	4	0	50	1.21
45620006--45620948	178	5.2	180	79	8	927	29	17	24	28	1.97
45620364--45620893	184	2.9	181	76	9	456	29	17	25	28	1.97
45630141--45630230	37	2.4	37	88	0	144	52	10	18	18	1.73
45630675--45630714	3	13.3	3	100	0	80	32	0	0	67	0.91
45631157--45631194	14	2.7	14	87	0	58	44	13	13	28	1.81
45641223--45641293	37	1.9	37	97	0	133	29	50	0	19	1.48
45641276--45641311	18	2.0	18	88	0	54	25	55	0	19	1.43
45641596--45641720	59	2.1	60	82	11	150	27	5	4	62	1.38
45641694--45641731	19	2.1	18	95	5	67	31	0	0	68	0.90
45641586--45641722	60	2.2	60	80	11	152	26	5	5	63	1.36
45641694--45641733	11	3.6	12	80	12	50	32	0	0	67	0.91
45641703--45641733	14	2.2	14	94	0	53	32	0	0	67	0.91
45641934--45641975	21	2.0	21	85	0	57	23	11	7	57	1.59
45642007--45642059	21	2.6	21	81	3	63	28	5	3	62	1.35
45642191--45642432	126	1.9	126	95	0	439	29	18	14	37	1.91
45648624--45648816	50	3.8	50	90	0	296	20	30	23	26	1.98
45648911--45648941	13	2.4	13	94	0	53	54	12	0	32	1.38
45649154--45649209	30	1.9	29	82	7	69	32	23	1	42	1.64
45656161--45656353	50	3.8	50	90	0	296	20	30	23	26	1.98
45656448--45656478	13	2.4	13	94	0	53	54	12	0	32	1.38
45662030--45662084	28	2.0	28	81	0	65	47	1	3	47	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45662807--45662839	15	2.3	15	89	5	50	39	3	3	54	1.31
45663816--45663846	16	2.0	16	93	6	55	38	0	0	61	0.96
45663939--45663995	26	2.1	27	81	12	64	50	1	3	43	1.29
45672060--45672235	46	3.8	46	76	5	194	22	20	27	29	1.98
45672056--45672227	93	1.8	93	90	2	274	22	20	28	28	1.99
45679905--45680032	64	2.0	64	93	0	220	31	17	14	37	1.89
45680094--45680660	177	3.2	177	92	0	929	29	19	22	28	1.98
45680547--45680641	43	2.2	45	80	14	110	33	20	18	27	1.96
45680502--45680796	131	2.2	132	87	0	439	30	18	22	28	1.97
45680325--45680948	308	2.0	310	86	1	869	31	18	21	28	1.97
45682687--45682745	31	1.9	31	89	6	93	37	8	0	54	1.31
45682687--45682749	27	2.2	29	81	18	71	36	7	0	55	1.29
45687595--45687653	22	2.7	21	86	5	73	32	0	3	64	1.10
45687762--45687819	29	2.0	29	100	0	116	31	17	20	31	1.96
45692344--45692377	17	2.1	15	89	10	50	41	0	0	58	0.98
45693021--45693081	9	6.8	9	96	0	95	39	27	9	22	1.86
45694087--45694119	17	1.9	17	93	0	57	12	39	6	42	1.67
45696118--45696163	19	2.3	20	88	7	76	50	15	8	26	1.73
45697343--45697389	15	3.2	15	72	6	51	31	2	6	59	1.34
45701902--45701949	21	2.3	21	82	13	55	58	2	0	39	1.10
45704825--45704859	6	5.8	6	100	0	70	68	0	0	31	0.90
45709817--45709849	13	2.4	14	90	5	50	69	0	9	21	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45717310--45717348	19	2.1	19	95	0	69	25	10	12	51	1.71
45718744--45718833	29	3.2	29	82	3	103	31	26	12	30	1.92
45739265--45739331	28	2.4	28	94	0	116	17	43	19	19	1.89
45740294--45740513	46	4.8	45	72	13	137	22	29	20	27	1.98
45748073--45748297	40	5.6	40	83	2	281	22	27	24	25	2.00
45748037--45748297	80	3.3	80	82	3	294	22	26	24	25	2.00
45756210--45756434	40	5.6	40	81	2	254	23	27	23	25	2.00
45758451--45758636	44	4.2	45	81	4	193	34	20	21	23	1.97
45759788--45759834	14	3.5	13	82	8	58	2	29	0	68	1.02
45766989--45767095	28	3.8	28	92	0	160	34	10	25	29	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356