genome.fa.s11.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  152  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48820410--48820439	9	3.3	9	95	0	51	60	16	0	23	1.36
48832594--48832672	20	4.0	20	85	3	97	31	10	8	49	1.67
48832594--48832672	39	2.0	40	82	2	97	31	10	8	49	1.67
48832597--48832685	20	4.5	20	84	2	81	30	12	10	47	1.74
48833544--48833580	18	2.1	18	100	0	74	21	21	10	45	1.82
48838841--48839072	40	5.8	40	89	1	349	27	27	22	22	1.99
48846915--48847157	40	6.1	40	90	1	373	26	27	23	23	2.00
48846901--48847156	79	3.2	80	85	8	346	26	27	22	23	2.00
48852795--48852834	3	14.0	3	89	5	57	27	0	2	70	1.01
48853518--48853657	39	3.6	39	93	0	235	37	22	26	14	1.92
48855578--48855639	27	2.3	27	88	0	88	37	19	24	19	1.94
48866273--48866354	26	3.2	26	92	0	137	32	7	23	36	1.82
48874135--48874319	79	2.3	81	82	9	220	24	23	27	24	2.00
48874136--48874319	40	4.6	40	81	11	200	25	23	27	23	2.00
48874187--48874352	79	2.1	79	81	6	194	26	21	27	24	1.99
48879890--48879962	27	2.8	26	79	6	85	45	5	15	34	1.69
48884641--48884680	19	2.2	19	86	4	55	2	12	5	80	0.98
48900885--48900927	21	2.0	21	100	0	86	23	30	4	41	1.74
48905751--48905957	53	3.8	53	76	3	144	19	22	17	39	1.92
48934162--48934347	47	4.0	47	89	0	273	32	11	29	25	1.92
48934191--48934262	22	3.1	22	64	24	58	33	15	29	22	1.94
48934236--48934311	23	3.2	25	62	24	63	28	13	34	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48934326--48934509	98	1.9	96	89	4	289	36	7	26	30	1.83
48934325--48934509	48	3.8	48	87	5	282	36	7	25	30	1.83
48934655--48934763	37	2.9	37	93	0	173	23	20	29	26	1.99
48936034--48936425	40	9.8	40	96	0	685	23	21	29	25	1.99
48940461--48940655	47	4.1	47	80	8	182	34	9	28	27	1.88
48940490--48940563	23	3.1	25	62	25	59	29	13	33	22	1.93
48940578--48940761	98	1.9	96	91	4	298	36	6	26	30	1.82
48940577--48940761	48	3.8	48	88	5	291	36	6	26	30	1.82
48940907--48941015	37	2.9	37	90	0	164	22	19	30	27	1.98
48942000--48942061	31	2.0	31	96	0	115	20	9	27	41	1.84
48950588--48950888	27	11.1	27	85	4	356	33	19	21	24	1.97
48950588--48950888	54	5.6	55	86	4	398	33	19	21	24	1.97
48951029--48951101	27	2.7	28	80	4	78	21	23	21	32	1.98
48952016--48952135	56	2.1	56	96	0	222	45	10	23	21	1.82
48953266--48953448	79	2.3	81	82	7	214	24	22	27	25	2.00
48953266--48953450	40	4.7	40	84	6	207	24	22	28	25	1.99
48953319--48953483	40	4.2	40	84	6	142	26	20	27	25	1.99
48953319--48953483	79	2.1	79	82	6	192	26	20	27	25	1.99
48959944--48960063	56	2.1	56	98	0	231	45	9	23	22	1.81
48961195--48961419	40	5.7	40	85	5	287	24	21	28	25	1.99
48968061--48968972	455	2.0	455	100	0	1824	30	23	15	31	1.95
48974314--48974409	27	3.5	26	82	12	88	35	18	22	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48974314--48974428	28	4.2	28	80	8	130	34	19	23	22	1.96
48974314--48974429	55	2.1	54	84	4	144	34	19	23	22	1.97
48979036--48979223	40	4.7	40	95	0	322	21	27	21	30	1.98
48982282--48982388	40	2.7	40	84	8	137	31	26	16	25	1.97
48984512--48984642	40	3.3	40	94	2	219	28	27	19	24	1.99
48984512--48984693	80	2.3	81	84	6	237	26	28	20	24	1.99
48991922--48992101	28	6.6	27	93	2	279	31	28	13	26	1.94
48991922--48992101	55	3.3	55	93	1	290	31	28	13	26	1.94
48991922--48992101	83	2.2	82	92	1	297	31	28	13	26	1.94
48995866--48996046	40	4.5	40	86	4	231	26	28	20	24	1.99
49003275--49003454	28	6.6	27	92	2	270	31	28	13	26	1.94
49003275--49003454	55	3.3	55	92	1	281	31	28	13	26	1.94
49003275--49003454	83	2.2	82	90	4	290	31	28	13	26	1.94
49011451--49011574	27	4.6	26	92	4	158	29	29	14	26	1.95
49011451--49011574	55	2.3	54	92	1	203	29	29	14	26	1.95
49015328--49015511	40	4.6	40	87	4	237	26	27	21	23	1.99
49022296--49022374	37	2.1	37	88	0	113	25	17	31	25	1.97
49035536--49035712	23	7.8	22	72	9	124	28	21	20	29	1.98
49035536--49035713	46	3.9	46	88	3	245	28	21	20	29	1.98
49043887--49044045	53	3.0	52	77	5	149	35	16	23	24	1.94
49044166--49044210	23	1.9	24	90	4	74	42	11	24	22	1.86
49046145--49046315	40	4.3	40	96	1	308	24	19	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49046090--49046315	80	2.8	80	88	4	314	24	21	26	26	1.99
49054401--49054507	40	2.7	40	85	8	139	26	21	26	26	2.00
49054415--49054507	40	2.3	40	90	3	143	24	21	26	26	1.99
49055970--49056000	16	1.9	16	93	0	53	41	0	22	35	1.54
49058774--49058909	23	5.8	23	78	6	121	26	24	16	32	1.96
49058783--49058912	46	2.7	48	86	9	169	27	23	16	31	1.96
49064139--49064182	22	2.0	22	82	8	54	47	2	0	50	1.13
49064149--49064192	22	2.0	22	90	0	70	43	2	2	52	1.26
49069798--49069842	23	2.0	23	81	0	54	51	15	2	31	1.56
49075495--49075720	40	5.7	40	87	4	253	26	26	21	25	1.99
49083502--49083727	40	5.7	40	87	4	253	26	26	21	26	2.00
49085899--49085938	10	3.9	10	87	6	62	32	20	15	32	1.93
49095721--49095787	31	2.2	31	89	5	100	16	22	19	41	1.90
49106873--49106950	39	2.0	39	97	0	147	33	34	2	29	1.71
49118639--49118934	39	7.6	39	86	3	373	30	26	20	22	1.99
49124480--49124772	115	2.5	116	85	4	378	31	27	19	22	1.97
49124480--49124772	39	7.6	39	87	3	371	31	27	19	22	1.97
49135718--49135916	27	7.4	27	83	3	222	29	22	8	40	1.83
49135718--49135916	80	2.5	81	85	4	285	29	22	8	40	1.83
49135920--49136044	27	4.6	27	82	5	112	43	21	7	28	1.79
49135906--49136044	54	2.6	53	82	5	154	41	21	8	28	1.83
49135948--49136073	27	4.6	28	86	6	145	43	22	4	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49136735--49136781	20	2.3	20	92	7	78	36	10	19	34	1.86
49136854--49136936	25	3.4	25	86	6	125	27	20	20	31	1.97
49141470--49141527	27	2.1	27	87	6	82	37	15	17	29	1.90
49150606--49150759	40	3.9	39	83	6	134	26	27	20	25	1.99
49150630--49150812	79	2.3	80	82	7	212	25	27	22	24	2.00
49150628--49150812	40	4.7	40	82	7	216	25	28	22	24	1.99
49158714--49158896	79	2.3	81	83	5	221	24	28	22	24	2.00
49158693--49158896	40	5.1	40	80	8	220	24	28	22	25	1.99
49161158--49161209	27	2.0	26	84	3	68	17	30	21	30	1.96
49168059--49168089	10	3.1	10	100	0	62	32	29	9	29	1.89
49171136--49171235	27	3.7	27	90	2	148	41	27	7	25	1.81
49171136--49171260	54	2.3	54	86	5	164	40	24	8	26	1.83
49171127--49171260	27	5.0	27	81	8	139	39	24	8	27	1.84
49171127--49171287	54	3.0	54	80	5	148	39	24	8	27	1.83
49171136--49171332	27	7.3	26	81	6	105	40	24	8	27	1.83
49171212--49171368	81	1.9	81	81	2	190	38	22	7	30	1.82
49171244--49171368	27	4.6	27	79	4	117	39	24	7	29	1.82
49171353--49171422	27	2.6	27	86	0	104	38	18	17	25	1.92
49172782--49173083	40	7.6	40	89	4	418	25	26	21	25	2.00
49181781--49181882	28	3.6	28	90	0	159	27	34	13	24	1.93
49182093--49182129	16	2.3	16	90	0	56	13	24	16	45	1.83
49199109--49199286	27	6.6	26	80	6	169	26	16	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49199110--49199265	82	1.9	81	86	3	224	26	16	28	28	1.97
49199106--49199286	82	2.2	81	82	2	220	26	16	28	28	1.97
49207143--49207320	27	6.6	26	80	6	169	26	16	28	28	1.97
49207144--49207299	82	1.9	81	86	3	224	26	16	28	28	1.97
49207140--49207320	82	2.2	81	82	2	220	26	16	28	28	1.97
49219117--49219165	24	2.0	24	84	7	64	34	22	12	30	1.91
49219446--49219487	14	3.1	14	79	3	50	19	4	4	71	1.22
49227937--49228066	47	2.8	47	86	0	170	33	30	15	20	1.94
49236399--49236440	21	2.0	21	100	0	84	42	9	14	33	1.78
49245376--49245560	79	2.3	81	81	7	200	24	27	22	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356