Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  323  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104541803--104541872
29
2.5
28
75
13
72
35
2
4
57
1.33
104541868--104541910
21
2.0
21
82
8
52
32
4
0
62
1.15
104541917--104541985
35
2.0
35
83
11
88
39
0
2
57
1.13
104541995--104542272
92
3.0
91
83
11
345
33
8
21
36
1.83
104545153--104545289
40
3.4
39
78
2
139
32
14
18
34
1.92
104565005--104565093
46
1.9
46
100
0
178
37
4
11
47
1.60
104571682--104571771
18
5.0
18
84
0
126
32
15
23
28
1.95
104571680--104571771
36
2.6
36
87
6
150
31
16
22
29
1.96
104579016--104579225
51
4.1
51
93
0
348
30
22
14
32
1.94
104582222--104582298
31
2.5
31
95
0
136
23
11
16
48
1.79
104582328--104582371
23
2.0
23
86
4
63
31
9
9
50
1.65
104605703--104605755
19
2.8
19
81
13
65
43
0
0
56
0.99
104605702--104605764
18
3.4
19
72
24
53
39
0
0
60
0.97
104610968--104611016
23
2.1
23
81
7
55
28
4
22
44
1.71
104616701--104617681
488
2.0
488
98
0
1899
25
15
25
33
1.95
104628585--104628685
38
2.7
38
87
0
148
13
17
29
38
1.89
104636000--104636035
15
2.5
15
90
4
56
55
5
0
38
1.23
104636061--104636126
25
2.7
25
74
9
64
53
1
0
45
1.09
104637432--104637483
15
3.4
14
74
25
52
26
0
7
65
1.20
104637446--104637503
16
3.6
16
71
28
52
25
0
3
70
1.03
104637435--104637502
31
2.2
32
89
7
104
27
0
5
66
1.15
104637435--104637512
31
2.5
31
85
10
88
29
0
6
64
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104642586--104642632
24
2.0
24
86
0
67
42
2
2
53
1.25
104652558--104652600
19
2.3
19
88
4
61
44
4
9
41
1.57
104654124--104654169
19
2.5
19
92
3
76
41
4
10
43
1.59
104657566--104657590
13
1.9
13
100
0
50
24
12
8
56
1.62
104663422--104663494
28
2.6
28
80
10
87
30
24
19
26
1.98
104669413--104669458
22
2.1
22
83
0
56
43
0
0
56
0.99
104669428--104669458
11
2.8
11
100
0
62
35
0
0
64
0.94
104671493--104671584
48
1.9
48
95
0
166
18
26
19
35
1.95
104675962--104676030
31
2.3
31
85
7
88
44
17
11
26
1.82
104676362--104676390
14
2.0
15
93
6
51
55
6
37
0
1.27
104676363--104676409
15
3.2
15
84
3
51
55
4
36
4
1.39
104682600--104682667
7
9.3
7
81
9
82
48
35
0
16
1.46
104682600--104682667
15
4.6
15
83
7
86
48
35
0
16
1.46
104682601--104682667
22
3.0
22
88
2
98
49
35
0
14
1.44
104684422--104684450
13
2.2
13
100
0
58
37
0
0
62
0.96
104684616--104684733
38
3.2
37
67
18
102
54
14
0
30
1.46
104684611--104684779
72
2.3
72
91
2
268
52
14
0
32
1.46
104684787--104684878
27
3.2
27
67
16
76
53
11
0
34
1.38
104684788--104684910
60
2.1
59
95
1
219
53
9
0
36
1.34
104685101--104685148
26
1.9
24
84
16
62
41
2
0
56
1.11
104689744--104689778
17
2.1
17
100
0
70
51
20
5
22
1.68
104693394--104693577
11
16.7
11
74
10
135
57
29
8
4
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104693391--104693533
55
2.6
55
87
2
200
58
27
8
4
1.48
104693493--104693573
23
3.6
23
69
15
69
59
25
8
6
1.51
104699411--104699804
86
4.6
85
77
4
290
25
24
18
30
1.98
104699411--104699828
43
9.7
43
75
4
259
24
24
19
31
1.98
104699531--104699784
129
2.0
129
80
7
293
26
25
19
27
1.99
104706056--104706439
43
8.9
43
76
4
272
27
17
26
28
1.98
104706056--104706439
86
4.5
86
77
3
351
27
17
26
28
1.98
104706005--104706439
129
3.4
128
75
4
372
27
17
26
28
1.98
104706908--104707595
228
3.0
228
95
0
1223
33
16
21
29
1.95
104710568--104710619
24
2.4
22
79
17
63
17
0
19
63
1.31
104711562--104711744
43
4.3
43
81
3
201
28
18
25
27
1.98
104715074--104715169
3
32.0
3
73
8
79
32
5
3
59
1.35
104715056--104715140
39
2.2
39
85
4
109
31
8
1
58
1.35
104715478--104715509
7
4.6
7
100
0
64
15
0
0
84
0.63
104723385--104723447
27
2.2
29
80
5
76
49
3
11
36
1.54
104724803--104724863
23
2.7
23
94
0
104
18
0
37
44
1.50
104725964--104726031
35
1.9
35
93
0
118
33
7
13
45
1.71
104726158--104726986
59
14.1
59
90
1
1252
44
4
5
46
1.44
104729055--104729116
25
2.5
25
86
0
79
30
22
35
11
1.89
104729151--104729202
20
2.6
21
90
9
81
42
3
32
21
1.71
104729276--104729378
39
2.6
39
85
1
161
27
23
14
34
1.94
104733135--104733167
16
2.1
16
94
0
57
24
24
6
45
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104744486--104744521
16
2.2
16
100
0
72
22
19
38
19
1.93
104745238--104745527
120
2.4
120
92
3
494
42
2
4
50
1.36
104745368--104745423
15
4.1
14
78
14
55
41
0
0
58
0.98
104745479--104745513
18
2.0
17
88
5
52
45
0
0
54
0.99
104745467--104745741
147
1.9
149
96
1
509
47
2
3
46
1.33
104745626--104745660
18
2.0
17
88
5
52
45
0
0
54
0.99
104745822--104745916
45
2.1
45
86
1
129
33
26
5
34
1.79
104745897--104745948
16
3.2
16
91
0
77
36
34
0
28
1.58
104750420--104750451
7
4.6
7
100
0
64
15
0
40
43
1.47
104751180--104751227
11
4.4
11
80
17
55
2
12
14
70
1.25
104755607--104755665
12
5.3
11
78
15
59
1
13
15
69
1.27
104755607--104755669
11
5.5
11
72
12
56
1
14
15
68
1.29
104756443--104756524
41
2.0
41
81
9
96
28
14
9
47
1.76
104758972--104759054
18
4.1
21
80
10
68
42
15
7
34
1.75
104758972--104759029
22
2.6
22
81
7
64
41
17
5
36
1.72
104759001--104759091
35
2.6
35
85
13
125
37
14
9
38
1.79
104759008--104759079
19
3.9
19
89
10
123
37
15
9
37
1.80
104759198--104759237
21
2.0
20
85
5
53
10
2
17
70
1.27
104759430--104759659
45
5.1
45
77
5
239
25
27
16
30
1.97
104759446--104759815
78
4.4
91
83
7
258
24
27
17
30
1.97
104759599--104759841
78
3.1
78
95
1
434
24
25
18
31
1.98
104759599--104759893
78
3.8
78
91
1
432
24
24
18
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104764003--104764161
46
3.4
46
73
14
173
22
16
28
32
1.96
104764046--104764208
47
3.5
47
73
14
183
22
18
28
30
1.97
104763998--104764216
93
2.4
93
98
0
420
22
17
28
31
1.97
104770338--104770428
35
2.6
35
85
13
125
37
14
9
38
1.79
104770345--104770416
19
3.9
19
89
10
123
37
15
9
37
1.80
104771200--104771242
8
5.4
8
100
0
86
39
25
0
34
1.56
104779053--104779098
17
2.7
17
90
6
67
21
0
2
76
0.90
104789210--104789255
17
2.7
17
90
6
67
21
0
2
76
0.90
104794338--104794424
27
3.2
26
83
9
102
37
0
2
59
1.10
104794363--104794411
19
2.6
18
87
9
62
42
0
0
57
0.99
104804790--104804848
29
2.0
29
93
0
100
44
20
5
30
1.73
104805840--104805878
16
2.5
15
84
15
53
28
5
7
58
1.47
104805971--104806057
44
2.0
44
95
0
156
37
8
17
36
1.79
104808457--104808497
21
2.0
21
95
0
73
24
17
29
29
1.97
104808570--104808637
3
22.7
3
100
0
136
67
0
32
0
0.91
104808954--104809029
38
2.0
38
100
0
152
26
5
15
52
1.64
104816186--104816349
85
1.9
86
88
1
249
26
14
15
43
1.85
104816502--104816540
14
2.9
14
84
3
53
33
5
15
46
1.68
104816510--104816577
34
1.9
36
94
5
122
30
7
11
50
1.66
104816525--104816564
20
2.0
20
85
0
53
27
10
10
52
1.66
104816661--104816704
22
2.0
22
95
0
79
47
0
0
52
1.00
104816661--104816709
22
2.5
20
78
18
57
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104820044--104820068
12
2.1
12
100
0
50
32
24
8
36
1.84
104829721--104829756
18
1.9
18
88
5
54
30
2
2
63
1.22
104830330--104830390
22
2.8
22
97
0
113
26
36
18
19
1.94
104831597--104831634
17
2.2
18
90
4
60
26
10
0
63
1.27
104831631--104831735
3
35.0
3
70
24
71
32
0
0
65
1.05
104831618--104831687
10
6.9
10
72
27
51
32
2
0
64
1.08
104831603--104831730
48
2.5
50
82
12
138
31
3
0
64
1.14
104843978--104844333
89
4.0
89
74
13
356
34
19
19
26
1.95
104844193--104844461
86
3.1
84
67
18
221
34
21
19
25
1.96
104844067--104844461
175
2.3
174
92
1
670
33
21
18
25
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356