Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  297  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96738751--96738793
21
2.0
22
86
13
63
44
0
13
41
1.44
96738751--96738794
20
2.1
21
84
12
56
45
0
13
40
1.44
96738788--96738945
63
2.5
62
83
11
196
32
10
16
41
1.82
96739128--96739287
82
2.0
82
97
0
302
30
20
26
23
1.98
96739128--96739293
41
4.0
41
90
0
260
30
20
26
22
1.98
96745326--96745581
72
3.6
72
99
0
503
42
24
6
27
1.78
96745582--96745631
3
16.7
3
100
0
100
68
0
0
32
0.90
96747833--96747865
16
2.1
16
94
0
57
39
6
9
45
1.61
96748614--96748648
18
1.9
18
94
0
61
22
45
8
22
1.79
96755298--96755338
21
2.0
21
90
0
64
46
12
2
39
1.54
96755325--96755365
19
2.2
19
91
8
66
41
7
4
46
1.53
96759602--96759652
6
8.3
6
91
4
75
78
3
1
15
0.99
96761746--96761786
19
2.2
19
86
0
55
53
0
46
0
1.00
96771582--96771622
21
2.0
21
95
0
73
43
9
2
43
1.50
96772799--96772840
22
1.9
22
90
0
66
14
9
21
54
1.68
96774459--96774509
24
2.2
25
83
13
65
50
7
1
39
1.42
96776715--96776750
18
2.0
18
94
0
63
22
13
30
33
1.93
96777310--96777365
21
2.7
21
97
0
103
28
19
23
28
1.98
96784817--96784854
17
2.2
17
90
0
58
60
2
2
34
1.24
96786562--96787233
44
15.5
44
70
10
352
19
23
21
35
1.96
96786562--96787152
86
6.8
87
86
3
755
19
23
21
35
1.96
96795339--96795380
19
2.2
20
82
4
50
50
7
14
28
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96799697--96799734
17
2.2
17
90
0
58
60
2
2
34
1.24
96805015--96805055
21
1.9
22
85
5
57
31
24
4
39
1.76
96807005--96807050
10
4.7
10
76
15
51
17
2
2
78
0.96
96807800--96807890
43
2.1
43
81
0
101
19
37
19
23
1.94
96813075--96813108
17
2.0
17
94
0
59
26
11
14
47
1.79
96813434--96813808
33
11.0
33
82
6
435
27
34
16
21
1.94
96814191--96814560
183
2.0
183
97
0
704
31
14
26
26
1.95
96814688--96814776
45
2.0
45
95
0
160
25
30
15
28
1.96
96833317--96833400
42
2.0
42
100
0
168
30
16
16
35
1.92
96833759--96833797
19
2.1
19
90
0
60
30
30
0
38
1.58
96835864--96836000
62
2.3
57
83
7
157
47
0
3
48
1.24
96836168--96836222
16
3.4
16
87
0
83
29
29
7
34
1.84
96837591--96837633
21
2.0
21
86
4
59
58
4
0
37
1.19
96838675--96838733
31
1.9
31
83
13
77
42
3
8
45
1.51
96840383--96840447
3
22.3
3
74
12
55
35
0
4
60
1.18
96840831--96840871
22
1.9
21
85
14
57
75
2
12
9
1.13
96841783--96841843
21
2.9
21
80
2
77
14
18
24
42
1.88
96845813--96846068
21
12.2
21
73
8
74
18
20
15
44
1.86
96845826--96846065
42
5.7
42
83
3
277
18
20
15
45
1.85
96850183--96850502
46
7.0
46
92
0
435
40
14
24
21
1.90
96850788--96850820
17
2.0
17
94
5
59
48
0
15
36
1.45
96872117--96872163
18
2.6
18
83
6
51
65
4
2
27
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96881683--96881728
24
1.9
24
100
0
92
34
21
13
30
1.91
96883093--96883271
89
2.0
89
98
0
349
29
19
12
38
1.88
96889021--96889081
9
6.8
9
96
0
104
22
9
29
37
1.87
96889242--96889266
12
2.1
12
100
0
50
16
24
36
24
1.94
96892099--96892259
61
2.6
61
76
5
164
39
18
4
38
1.70
96903029--96903063
18
2.0
18
88
5
54
22
17
34
25
1.96
96905691--96905767
27
2.9
27
92
0
127
40
16
16
25
1.90
96914802--96914970
46
3.6
46
77
10
130
26
17
29
26
1.98
96928313--96928343
16
1.9
16
93
0
53
54
0
3
41
1.16
96938987--96939016
16
1.9
16
93
6
53
70
0
10
20
1.16
96948350--96948404
26
2.2
24
78
15
58
45
5
0
49
1.25
96948486--96948515
15
1.9
16
93
6
53
60
0
0
40
0.97
96958582--96958632
21
2.4
21
86
0
75
25
7
35
31
1.85
96960613--96960671
29
2.1
28
81
9
68
49
6
10
33
1.63
96962197--96962343
64
2.3
64
97
0
285
36
8
13
41
1.76
96962975--96963006
15
2.1
15
94
0
55
53
0
15
31
1.43
96962990--96963733
378
2.0
379
98
0
1436
24
16
17
41
1.89
96966030--96966073
21
2.1
21
100
0
88
9
15
31
43
1.79
96971712--96971747
18
1.9
19
94
5
65
50
0
16
33
1.46
96971817--96971928
48
2.3
49
80
4
147
26
14
16
41
1.87
96979871--96979951
27
3.0
28
74
13
82
62
7
1
28
1.29
96979932--96979969
17
2.2
17
95
0
67
78
2
0
18
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96980055--96980111
26
2.3
24
77
11
60
68
1
5
24
1.20
96981352--96981623
89
3.1
89
65
13
218
26
22
18
32
1.97
96981715--96981855
44
3.2
44
74
12
112
20
27
20
31
1.98
96981703--96982263
88
6.4
88
87
2
718
21
24
20
33
1.97
96981680--96982263
175
3.3
176
85
3
743
22
24
20
33
1.97
96981935--96982075
44
3.2
43
66
19
112
22
22
18
36
1.95
96982017--96982165
44
3.4
44
66
14
117
22
23
19
34
1.97
96982332--96982459
64
2.0
64
90
3
204
35
14
18
32
1.91
96986867--96986912
19
2.4
19
85
7
58
45
15
19
19
1.85
96989178--96989218
19
2.2
19
90
0
64
78
2
0
19
0.87
96989583--96989622
20
2.0
20
85
0
53
25
10
15
50
1.74
96990832--96990865
11
3.1
11
100
0
68
44
8
11
35
1.72
96991733--96991766
16
2.1
16
94
0
59
52
0
35
11
1.38
96994478--96994585
44
2.4
44
85
3
135
30
23
12
33
1.92
96999248--96999414
46
3.6
46
91
1
255
19
22
13
44
1.85
96999434--96999486
26
2.0
26
100
0
106
26
24
11
37
1.89
96999396--96999531
71
1.9
71
90
3
220
25
23
13
37
1.92
97005720--97005764
21
2.1
21
84
8
56
26
2
22
48
1.62
97007567--97007612
20
2.3
20
85
7
58
21
17
8
52
1.71
97009175--97009214
6
6.7
6
94
0
71
2
0
30
67
1.04
97009256--97009354
43
2.3
43
92
1
162
40
16
10
33
1.82
97011668--97011759
34
2.7
34
83
8
116
44
0
15
40
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97011850--97012195
125
2.8
124
84
6
411
39
17
14
28
1.89
97022853--97022909
25
2.3
23
78
18
62
52
5
0
42
1.24
97025084--97025148
30
2.2
30
82
0
76
41
3
27
27
1.71
97032790--97032831
21
2.0
21
100
0
84
23
23
14
38
1.92
97035534--97035607
27
2.7
27
79
4
87
36
0
20
43
1.52
97041973--97042120
43
3.4
43
86
1
190
28
14
24
32
1.95
97061783--97061841
21
2.8
22
85
7
70
23
0
6
69
1.12
97061812--97061870
26
2.4
24
83
10
75
28
0
3
67
1.06
97067692--97067840
38
3.9
38
90
1
217
29
26
23
20
1.99
97075320--97075436
58
2.0
58
100
0
234
38
5
20
35
1.75
97077007--97077092
35
2.5
35
90
3
138
36
23
17
23
1.95
97077444--97077558
3
37.7
3
78
6
97
28
6
0
63
1.26
97090116--97090284
44
3.8
44
79
6
128
33
14
19
33
1.92
97090522--97090616
44
2.2
44
90
0
145
32
21
21
25
1.98
97092367--97092491
3
39.3
3
69
23
62
28
8
1
61
1.35
97097704--97097762
19
3.1
19
76
11
57
30
5
15
49
1.66
97097704--97097761
20
3.0
20
73
14
57
29
5
15
50
1.66
97100394--97100435
15
2.8
16
82
10
52
28
9
2
59
1.41
97101658--97101700
22
2.0
22
85
0
59
55
6
13
23
1.62
97101976--97102019
22
2.0
22
100
0
88
45
27
4
22
1.72
97102821--97102946
42
3.0
43
88
4
184
30
23
14
31
1.94
97102838--97102984
42
3.3
42
88
8
188
29
25
13
30
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97102891--97103099
49
4.2
48
75
12
192
33
26
12
27
1.93
97108288--97108339
22
2.4
22
86
0
68
65
19
7
7
1.43
97110448--97110484
17
2.1
18
85
14
51
59
0
0
40
0.97
97110781--97110823
22
2.0
22
100
0
86
30
13
13
41
1.84
97111300--97111357
18
3.1
18
82
12
55
53
1
1
43
1.21
97111300--97111357
19
3.1
19
82
12
57
53
1
1
43
1.21
97128734--97128788
16
3.4
16
78
11
51
43
5
27
23
1.75
97128981--97129010
15
2.0
15
93
0
51
36
13
26
23
1.92
97134953--97134994
20
2.1
20
82
8
50
59
4
0
35
1.19
97135009--97135062
19
3.0
18
78
10
58
44
1
0
53
1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356