Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  332  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106906956--106907003
3
16.0
3
100
0
96
66
0
0
33
0.92
106907378--106907445
29
2.3
31
84
5
86
30
10
14
44
1.79
106931519--106931568
24
2.0
25
85
11
68
66
2
2
30
1.14
106931519--106931559
12
3.5
11
87
12
55
68
2
0
29
1.03
106933843--106933885
19
2.4
17
81
11
50
48
2
6
41
1.43
106937489--106937541
26
2.0
27
85
7
74
24
15
22
37
1.92
106939025--106939108
26
3.2
26
96
0
150
36
25
4
33
1.77
106943282--106943334
26
2.0
27
85
7
74
24
15
22
37
1.92
106944819--106944902
26
3.2
26
96
0
150
36
25
4
33
1.77
106949078--106949130
26
2.0
27
85
7
74
24
15
22
37
1.92
106950616--106950673
26
2.2
26
96
0
107
36
22
5
36
1.77
106951514--106951655
72
2.0
73
81
14
170
37
2
0
59
1.17
106951554--106951655
12
8.2
12
73
11
64
35
3
0
60
1.15
106951830--106951939
14
8.2
12
67
20
58
34
4
1
59
1.29
106951799--106951885
16
5.9
16
67
25
59
33
4
1
60
1.24
106951810--106951885
14
5.2
14
70
14
55
34
5
1
59
1.28
106951798--106951887
42
2.2
41
79
13
96
33
4
1
61
1.23
106951862--106951926
21
3.1
20
75
20
62
32
6
3
58
1.38
106957785--106957871
22
3.9
22
70
18
63
36
1
1
60
1.11
106957762--106957863
46
2.2
46
80
16
115
34
1
1
61
1.18
106957929--106957963
17
2.1
17
94
0
61
34
8
0
57
1.29
106957954--106958006
19
2.7
19
81
16
63
33
1
3
60
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106969840--106970890
44
23.8
44
78
10
915
29
15
26
28
1.96
106969883--106970848
354
2.7
354
91
2
1568
30
15
26
28
1.96
106972604--106972638
17
2.1
17
94
0
61
34
8
0
57
1.29
106972629--106972682
21
2.9
18
77
17
65
31
1
3
62
1.23
106977348--106977394
22
2.2
21
85
11
60
74
4
6
14
1.17
106977348--106977394
21
2.2
22
85
11
62
74
4
6
14
1.17
106977995--106978143
43
3.5
43
88
7
223
32
20
20
26
1.97
106980083--106980197
57
2.0
56
98
1
221
52
12
3
32
1.55
106984068--106984234
9
17.3
9
73
15
129
31
1
20
46
1.59
106984092--106984234
30
4.9
30
77
10
104
32
0
20
46
1.56
106984068--106984234
39
4.3
39
82
3
185
31
1
20
46
1.59
106984111--106984198
12
7.7
12
71
16
55
30
0
21
47
1.51
106984881--106985212
183
1.8
183
96
0
619
41
14
16
28
1.87
106986750--106986793
22
2.0
22
100
0
88
36
13
18
31
1.90
106987974--106988016
22
2.0
22
100
0
86
46
25
13
13
1.81
106989520--106989693
91
1.9
93
87
2
262
31
21
13
33
1.92
106990834--106991002
41
4.2
40
80
7
162
17
21
22
37
1.94
106992519--106992560
16
2.6
16
85
7
50
16
57
11
14
1.66
106992532--106992569
17
2.2
17
90
9
60
13
57
10
18
1.63
106992532--106992569
8
4.4
9
90
9
62
13
57
10
18
1.63
106993526--106993598
3
24.3
3
88
0
110
30
0
5
64
1.16
106993828--106993875
20
2.4
21
80
16
57
31
10
4
54
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106999628--106999661
14
2.5
13
86
9
50
85
2
0
11
0.71
106999632--106999683
11
4.6
11
83
7
61
78
5
1
13
1.01
106999629--106999684
23
2.4
23
82
5
69
80
5
1
12
0.96
107000794--107000915
64
1.9
64
91
0
199
29
16
16
37
1.91
107000968--107001290
86
3.8
86
90
0
529
31
22
23
21
1.98
107001150--107001332
42
4.3
42
74
8
172
31
22
22
22
1.98
107001021--107001248
44
5.3
44
63
12
148
32
22
23
21
1.98
107001150--107001426
128
2.2
128
87
2
385
32
21
23
21
1.98
107001064--107001471
214
1.9
215
87
3
599
33
21
23
21
1.97
107001407--107001560
44
3.5
44
66
8
123
35
19
25
19
1.95
107001309--107001570
89
3.0
89
85
3
298
33
19
25
21
1.96
107001657--107002050
45
8.7
44
73
12
307
32
18
21
27
1.97
107001662--107001835
92
1.8
92
85
4
240
33
18
20
27
1.96
107001663--107001965
137
2.2
137
93
0
516
33
18
20
27
1.96
107001799--107002143
181
1.9
182
90
3
552
31
19
22
26
1.97
107001663--107002019
137
2.6
137
88
1
493
32
18
21
27
1.97
107001896--107002061
89
1.9
85
81
7
199
29
19
24
26
1.99
107001894--107002050
44
3.6
44
77
6
151
28
20
23
27
1.99
107006957--107006987
12
2.6
12
100
0
62
9
25
51
12
1.70
107013521--107013582
29
2.1
30
90
3
99
58
12
3
25
1.50
107014392--107014460
29
2.3
31
85
5
88
30
11
15
42
1.83
107016985--107017207
43
5.2
43
82
3
252
29
29
17
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107016979--107017209
85
2.7
85
81
3
257
31
28
16
23
1.96
107017227--107017270
21
2.0
22
87
12
65
43
0
0
56
0.99
107022875--107022932
22
2.7
22
76
12
57
44
31
0
24
1.54
107022896--107022967
30
2.5
30
77
11
78
37
40
0
22
1.54
107022966--107023064
7
13.9
7
67
16
51
49
25
1
24
1.57
107022966--107023003
15
2.6
14
88
8
58
50
28
0
21
1.49
107022966--107023064
22
4.6
22
68
13
53
49
25
1
24
1.57
107023445--107023709
40
6.6
41
80
3
295
29
23
20
25
1.99
107023445--107023709
81
3.3
81
89
1
397
29
23
20
25
1.99
107023682--107023834
41
3.8
42
79
8
131
23
20
20
35
1.96
107023682--107023834
82
1.9
80
81
5
182
23
20
20
35
1.96
107028778--107028817
10
4.0
10
87
12
64
70
2
7
20
1.24
107029455--107029641
96
1.9
97
91
1
304
31
26
14
28
1.95
107030791--107030870
13
6.6
13
70
25
52
75
0
5
20
0.99
107030801--107030870
16
4.4
15
75
18
61
75
0
4
20
0.96
107030810--107030872
8
7.8
8
72
10
56
77
0
3
19
0.90
107030791--107030864
23
3.2
22
80
14
62
74
0
5
20
1.01
107035477--107035683
3
67.7
3
66
17
72
27
8
3
60
1.42
107035600--107035658
25
2.3
26
85
8
77
25
8
3
62
1.39
107038675--107038717
14
2.9
14
82
10
50
48
2
2
46
1.27
107049836--107049861
12
2.2
12
100
0
52
61
7
7
23
1.49
107049961--107049990
14
2.1
15
93
6
53
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107050759--107050829
23
3.6
19
73
21
58
60
1
2
35
1.20
107050759--107050797
10
4.2
9
84
15
53
64
2
0
33
1.08
107052201--107052293
39
2.3
39
87
3
132
35
21
20
22
1.96
107052201--107052405
40
5.1
40
73
7
148
33
20
19
26
1.97
107052225--107052445
40
5.5
40
71
11
125
29
19
19
31
1.97
107052201--107052445
80
3.1
80
78
10
243
31
20
19
28
1.96
107052806--107052857
21
2.4
21
78
9
52
26
0
25
48
1.52
107052892--107053005
7
16.0
7
73
9
79
19
0
42
37
1.51
107053139--107053180
15
2.9
15
86
6
61
26
0
26
47
1.52
107053442--107053493
8
6.6
8
80
4
52
63
1
0
34
1.06
107053442--107053505
15
4.2
15
74
4
56
57
1
0
40
1.08
107056644--107056736
43
2.2
43
78
7
100
31
10
25
32
1.90
107056658--107056862
43
4.8
43
79
1
187
26
15
28
29
1.96
107056740--107056885
43
3.4
43
83
0
112
25
16
28
30
1.97
107056701--107056888
86
2.2
86
82
0
223
25
16
27
30
1.97
107057023--107057056
18
1.9
17
88
5
50
50
20
2
26
1.63
107057158--107057207
22
2.2
24
82
13
61
64
8
4
24
1.38
107067247--107067297
25
2.0
25
96
0
93
50
3
13
31
1.60
107067416--107067558
74
1.9
74
92
0
241
45
13
16
24
1.83
107072138--107072178
21
2.0
21
90
0
64
19
29
21
29
1.98
107077000--107077069
30
2.4
31
76
9
74
47
0
4
48
1.21
107080270--107080299
15
2.1
14
93
6
51
0
10
0
90
0.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107086281--107086321
21
2.0
21
90
0
64
19
29
21
29
1.98
107095143--107095258
58
2.0
57
98
1
223
43
6
6
42
1.58
107103255--107103453
59
3.3
58
72
14
206
41
0
3
54
1.21
107103375--107103509
18
8.0
17
70
19
95
40
0
1
57
1.13
107103233--107103475
120
2.0
120
97
0
459
42
1
4
51
1.28
107103390--107103448
26
2.3
25
85
8
82
40
0
1
57
1.09
107103403--107103458
15
4.0
15
73
17
57
44
0
0
55
0.99
107103254--107103494
41
5.9
41
69
23
136
41
0
3
54
1.23
107103672--107103726
21
2.6
21
91
0
92
27
32
9
30
1.88
107110675--107110709
13
2.7
13
90
0
52
42
2
11
42
1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356