genome.fa.s11.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  111  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35266304--35266442	60	2.3	60	79	13	153	26	20	25	28	1.99
35267285--35267316	15	2.1	15	100	0	64	34	31	6	28	1.82
35286701--35286802	43	2.4	43	81	0	123	34	20	15	29	1.94
35305222--35305282	30	2.0	30	83	0	77	32	22	6	37	1.80
35310639--35310729	34	2.6	34	85	1	110	28	23	28	19	1.98
35315425--35315603	85	2.1	85	98	0	349	37	8	27	26	1.85
35316868--35317466	47	12.6	47	92	2	855	33	9	28	28	1.88
35316868--35317466	96	6.3	94	93	2	855	33	9	28	28	1.88
35317317--35317438	22	5.3	22	62	21	61	33	12	28	25	1.92
35319681--35319761	34	2.4	33	81	2	90	28	23	24	23	2.00
35321960--35322023	24	2.6	25	87	4	87	32	31	15	20	1.94
35322047--35322096	24	2.1	24	88	0	73	32	30	12	26	1.92
35322052--35322333	94	3.0	94	96	0	501	39	20	10	29	1.87
35328834--35328891	30	1.9	30	85	0	80	29	22	8	39	1.84
35332425--35332458	4	8.0	4	90	9	50	23	0	2	73	0.97
35332408--35332467	22	2.7	22	73	19	61	26	0	6	66	1.16
35334799--35334837	18	2.2	18	85	0	51	61	2	23	12	1.43
35336236--35336269	4	8.0	4	90	9	50	23	0	2	73	0.97
35336219--35336278	22	2.7	22	73	19	61	26	0	6	66	1.16
35339759--35339817	22	2.7	23	81	7	77	28	0	6	64	1.19
35339762--35339817	8	7.5	8	86	13	75	25	0	7	67	1.15
35341030--35341350	41	7.9	40	83	3	345	30	23	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35341030--35341318	123	2.4	122	84	2	393	31	23	21	24	1.98
35341030--35341350	81	4.0	80	84	2	390	30	23	21	24	1.99
35341354--35341452	41	2.4	41	93	0	171	23	23	19	34	1.97
35346080--35346233	43	3.6	43	76	6	145	32	25	14	27	1.95
35348111--35348148	19	2.0	19	85	10	51	15	18	44	21	1.86
35348441--35348495	27	2.0	27	85	0	74	36	21	20	21	1.95
35350579--35350796	39	5.6	40	76	11	227	22	21	29	26	1.99
35350579--35350796	40	5.6	38	77	11	167	22	21	29	26	1.99
35350581--35350796	77	2.8	80	80	13	277	22	21	30	25	1.99
35352420--35352596	41	4.4	39	81	10	182	25	27	21	25	1.99
35352420--35352596	80	2.2	81	84	7	220	25	27	21	25	1.99
35372620--35372649	16	1.9	15	93	6	51	43	0	23	33	1.54
35377938--35378071	56	2.4	56	86	2	189	33	20	15	29	1.94
35382386--35382444	29	2.0	29	100	0	118	50	16	13	18	1.77
35395712--35395887	46	3.8	46	77	12	198	20	19	29	30	1.97
35395709--35395880	93	1.8	93	93	0	299	20	20	29	29	1.98
35433610--35433663	24	2.2	25	83	6	67	72	3	1	22	1.10
35433667--35433754	24	3.5	25	72	17	74	60	3	5	30	1.36
35433805--35433850	22	2.2	22	84	7	60	60	0	4	34	1.16
35433808--35433850	17	2.4	18	84	7	52	60	0	4	34	1.17
35437139--35437303	43	3.8	43	72	9	156	30	25	14	29	1.95
35440335--35440425	46	2.0	46	91	0	146	27	30	7	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35440442--35440517	22	3.3	22	68	22	66	26	27	9	36	1.87
35440442--35440589	47	3.1	47	96	0	260	26	26	10	36	1.89
35442260--35442302	14	3.1	14	86	6	61	60	9	0	30	1.28
35442260--35442298	13	2.9	13	92	3	60	61	10	0	28	1.28
35443716--35443996	80	3.5	80	92	0	454	28	28	19	23	1.98
35443718--35443996	40	7.0	40	88	0	405	28	29	19	23	1.98
35445491--35445581	46	2.0	46	86	0	128	27	29	8	34	1.87
35445555--35445698	47	3.1	47	83	2	146	26	27	11	34	1.90
35447299--35447341	14	3.1	14	86	6	61	60	9	0	30	1.28
35447299--35447337	13	2.9	13	92	3	60	61	10	0	28	1.28
35452122--35452147	13	2.0	13	100	0	52	38	15	15	30	1.88
35454193--35454312	44	2.7	44	78	1	123	35	24	15	25	1.94
35454955--35455006	20	2.8	18	83	13	61	36	21	0	42	1.53
35458622--35458752	47	2.8	47	86	0	190	35	28	15	21	1.94
35460046--35460096	20	2.5	20	87	0	75	17	33	31	17	1.94
35462270--35462317	23	2.1	23	100	0	96	35	20	4	39	1.72
35463578--35463724	43	3.4	42	75	5	134	31	23	15	29	1.95
35464374--35464420	18	2.7	18	96	3	87	57	12	8	21	1.62
35465765--35465797	17	1.9	17	100	0	66	36	6	27	30	1.81
35474759--35475015	39	6.5	39	93	1	417	18	22	29	29	1.97
35476890--35476940	26	2.0	26	84	0	66	41	13	3	41	1.63
35477707--35477739	17	1.9	17	88	11	50	21	21	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35493130--35493387	136	1.9	136	91	0	426	30	17	17	35	1.92
35494110--35494141	11	2.9	11	95	0	55	40	18	0	40	1.51
35494078--35494139	32	1.9	32	83	6	81	41	16	1	40	1.57
35494275--35494384	48	2.3	47	84	12	143	38	10	3	48	1.54
35506576--35506617	18	2.4	18	88	4	59	21	26	9	42	1.83
35510106--35510613	126	4.0	125	89	2	732	27	19	17	35	1.94
35511145--35511215	19	3.8	19	85	12	103	43	22	0	33	1.54
35511174--35511205	16	2.0	16	100	0	64	37	25	0	37	1.56
35511336--35511389	16	3.4	16	69	23	51	53	27	0	18	1.45
35516098--35516135	16	2.4	16	100	0	76	31	21	15	31	1.94
35518136--35519484	672	2.0	672	99	0	2680	35	15	17	31	1.91
35519865--35519916	21	2.5	20	82	14	61	65	0	9	25	1.23
35520414--35520443	12	2.6	11	90	10	51	70	0	3	26	1.03
35520773--35520814	21	2.0	21	85	4	57	61	0	9	28	1.27
35523949--35524139	56	3.4	56	87	1	249	23	15	24	37	1.93
35525550--35525669	24	5.0	24	85	5	145	25	22	23	28	1.99
35525718--35525784	20	3.3	20	93	0	116	32	20	11	34	1.90
35525718--35525773	11	5.5	11	71	16	57	32	19	12	35	1.89
35533823--35533898	24	3.2	24	86	1	100	31	19	17	31	1.95
35533978--35534011	17	1.9	18	88	5	52	38	20	5	35	1.77
35540578--35540759	49	3.7	49	81	2	220	26	26	19	26	1.99
35540580--35540767	100	1.9	100	93	0	322	27	26	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35544724--35544802	31	2.5	31	97	0	149	27	25	18	27	1.98
35545056--35545243	26	7.3	26	86	2	249	27	22	21	27	1.99
35545056--35545243	52	3.7	52	92	3	303	27	22	21	27	1.99
35545293--35545379	20	4.3	20	91	2	131	31	17	11	40	1.85
35545415--35545462	25	1.9	25	86	0	69	29	14	22	33	1.94
35546087--35546163	27	2.9	27	79	11	86	22	18	19	40	1.92
35546212--35546545	27	12.3	27	73	8	117	32	9	20	37	1.85
35546204--35546239	19	1.9	19	88	5	56	33	5	25	36	1.79
35546426--35546545	28	4.4	27	78	7	98	31	10	19	39	1.84
35546294--35546649	188	1.9	188	81	5	441	34	8	21	35	1.84
35546550--35546637	27	3.3	27	86	0	113	39	4	25	30	1.75
35546563--35546648	27	3.2	27	84	0	82	36	4	22	37	1.75
35549442--35549784	40	8.6	40	90	2	467	24	19	27	27	1.99
35553636--35553978	40	8.6	40	91	2	485	24	20	27	27	1.99
35557831--35558173	40	8.6	40	90	2	476	24	20	27	27	1.99
35560521--35560599	31	2.5	31	97	0	149	27	25	18	27	1.98
35560623--35560719	47	2.2	42	83	9	113	34	19	15	30	1.93
35560852--35560987	26	5.3	26	88	3	190	26	22	22	28	1.99
35560852--35560987	52	2.7	51	93	5	224	26	22	22	28	1.99
35561052--35561124	11	7.2	11	69	16	59	34	19	8	38	1.81
35561037--35561123	20	4.3	20	94	2	140	32	19	9	39	1.83
35561054--35561130	9	7.8	10	69	16	54	33	19	7	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35561905--35561940	19	1.9	19	88	5	56	33	5	25	36	1.79
35561913--35562272	27	13.3	27	75	6	156	35	7	21	35	1.81
35562063--35562165	28	3.7	27	83	8	102	30	6	21	41	1.79
35561914--35562206	137	2.2	133	81	4	327	35	7	20	36	1.81
35561930--35562272	191	1.8	190	85	3	492	35	7	21	35	1.82
35564786--35564996	40	5.3	40	92	2	320	21	27	23	27	1.99
35577766--35577903	48	2.9	48	87	0	177	26	26	22	23	2.00
35584267--35584315	24	2.0	24	96	0	89	24	26	18	30	1.98
35589865--35589953	44	2.0	44	93	0	151	35	23	13	26	1.92
35594097--35594124	14	2.0	14	100	0	56	35	28	7	28	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356