genome.fa.s11.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  153  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49245376--49245560	40	4.7	40	82	6	207	24	27	22	25	2.00
49253320--49253504	79	2.3	82	83	7	229	24	27	22	24	2.00
49253301--49253504	40	5.1	40	81	8	229	24	27	22	25	2.00
49255242--49255424	79	2.3	81	84	7	232	25	27	22	24	2.00
49255221--49255424	40	5.1	40	82	8	238	25	27	22	24	2.00
49261471--49261653	40	4.6	40	84	5	235	24	26	22	25	2.00
49269524--49269707	40	4.6	40	84	2	235	23	25	23	26	2.00
49286704--49286887	40	4.6	40	84	2	235	23	25	23	26	2.00
49288703--49288744	7	6.1	7	80	2	50	71	2	2	23	1.10
49292185--49292360	46	3.8	46	73	12	153	20	20	27	31	1.97
49292181--49292353	93	1.9	93	91	0	283	20	20	28	30	1.98
49300513--49300686	89	2.0	89	93	2	296	40	20	13	25	1.89
49302018--49302046	12	2.4	12	100	0	58	24	41	27	6	1.80
49306380--49306505	39	3.2	39	94	0	207	21	20	29	28	1.98
49306380--49306523	39	3.7	39	91	1	200	21	22	29	27	1.99
49318148--49318207	27	2.3	26	85	2	75	35	20	23	21	1.96
49328627--49328693	31	2.2	29	81	5	80	32	10	11	44	1.75
49328848--49328930	31	2.7	31	79	3	89	38	16	12	32	1.86
49329213--49330976	720	2.4	711	83	7	2064	37	11	13	37	1.81
49344163--49344232	16	4.4	16	96	0	104	31	0	35	32	1.58
49344211--49344305	45	2.1	44	88	1	136	34	5	27	32	1.79
49344467--49344501	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49344425--49344497	27	2.7	27	76	8	76	52	2	0	45	1.15
49344604--49344770	47	3.6	46	71	12	146	47	4	2	45	1.35
49344663--49344734	28	2.6	28	84	8	85	51	4	0	44	1.20
49344902--49344946	22	2.0	22	100	0	90	42	13	0	44	1.43
49351449--49351484	6	6.0	6	100	0	72	16	16	0	66	1.25
49352792--49352863	36	2.0	36	100	0	144	41	19	13	25	1.88
49353029--49353070	15	2.8	15	85	7	59	52	14	14	19	1.75
49361366--49361417	23	2.3	22	75	21	54	9	23	1	65	1.32
49361411--49361449	18	2.2	18	85	0	51	12	23	2	61	1.43
49367661--49367795	63	2.1	63	83	0	162	28	25	20	25	1.99
49368498--49368575	26	2.9	26	75	11	77	67	3	16	11	1.35
49379560--49379600	11	3.5	11	86	6	55	31	2	14	51	1.56
49380688--49380855	48	3.5	48	73	3	158	29	19	25	25	1.99
49390839--49390947	26	4.1	26	72	22	68	34	1	2	60	1.22
49391088--49391135	18	2.7	18	78	18	55	33	4	2	60	1.27
49391088--49391142	18	3.1	17	73	21	51	34	5	1	58	1.32
49395727--49395852	28	4.5	28	90	2	182	32	28	12	26	1.93
49403655--49403780	28	4.5	28	90	2	182	32	28	12	26	1.93
49411587--49411712	28	4.5	28	90	2	182	32	28	12	26	1.93
49418733--49418921	50	3.8	49	86	2	243	29	26	18	25	1.98
49418734--49418921	99	1.9	99	88	2	286	29	26	18	25	1.98
49418734--49418929	101	2.0	99	87	2	284	28	27	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49420075--49420159	27	3.1	27	86	8	111	36	23	23	16	1.94
49429799--49429842	21	2.2	19	84	8	52	27	20	4	47	1.69
49430005--49430121	42	2.8	42	80	12	123	29	25	16	28	1.97
49430062--49430163	44	2.4	42	82	11	111	30	26	15	27	1.96
49435866--49435933	33	2.0	34	82	2	84	29	23	20	26	1.99
49436116--49436172	27	2.1	27	80	6	62	35	21	22	21	1.96
49436124--49436180	27	2.1	27	83	0	69	35	19	22	22	1.96
49436344--49436569	27	8.4	27	85	1	265	24	18	20	36	1.95
49441668--49441884	40	5.5	40	87	3	280	24	29	23	23	1.99
49443741--49444044	48	6.4	48	77	10	275	22	30	19	27	1.98
49443741--49444052	96	3.3	94	83	5	369	23	30	18	27	1.98
49453973--49454393	47	9.0	47	88	1	601	32	12	29	26	1.92
49453972--49454393	141	3.0	141	92	0	702	31	12	29	26	1.92
49454282--49454357	23	3.2	25	62	24	63	28	13	34	23	1.92
49454556--49454670	37	3.1	37	89	0	176	21	20	32	26	1.98
49455941--49456283	40	8.6	40	86	2	456	25	21	26	25	2.00
49460335--49460755	47	9.0	47	88	1	610	32	12	29	25	1.93
49460334--49460763	141	3.0	141	92	1	702	32	12	29	26	1.92
49460918--49461032	37	3.1	37	92	0	185	21	20	32	25	1.98
49464678--49464707	12	2.5	12	94	0	51	6	43	23	26	1.78
49465123--49465169	24	1.9	24	83	12	60	46	25	2	25	1.64
49481586--49481789	50	4.1	49	80	3	232	24	18	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49485546--49485643	24	4.0	24	93	1	160	35	5	38	20	1.75
49485545--49485653	48	2.2	48	88	6	166	35	5	37	21	1.77
49493508--49493666	48	3.3	48	81	0	192	25	20	31	23	1.98
49493550--49493681	48	2.8	47	82	6	151	26	19	29	24	1.98
49493508--49493681	96	1.8	96	88	0	267	26	20	29	23	1.98
49494754--49494840	39	2.2	39	95	0	156	27	27	22	21	1.99
49496915--49497084	46	3.7	46	73	13	168	23	19	26	30	1.98
49504506--49504678	46	3.7	46	75	13	174	21	20	27	29	1.98
49504503--49504673	93	1.8	93	89	0	270	21	21	28	28	1.98
49513357--49513632	48	5.7	47	76	8	200	27	19	30	23	1.98
49513448--49513629	96	1.9	96	82	4	233	28	19	29	22	1.98
49513347--49513614	144	1.9	144	85	4	380	27	18	30	23	1.98
49532711--49532771	30	2.0	30	87	0	86	31	22	8	37	1.84
49542224--49542326	37	2.8	37	96	0	188	26	32	20	21	1.98
49542371--49542695	48	6.8	48	92	0	533	30	28	6	34	1.82
49542371--49542695	96	3.4	96	96	0	587	30	28	6	34	1.82
49548250--49548290	21	1.9	22	85	5	57	39	21	0	39	1.54
49549322--49549382	13	4.6	13	77	18	63	37	14	3	44	1.62
49549299--49549382	40	2.1	40	82	8	100	38	14	3	44	1.62
49551846--49552280	27	16.2	27	79	6	409	26	20	10	42	1.84
49551849--49552280	81	5.4	81	84	7	481	26	21	9	42	1.84
49551847--49552270	54	7.9	55	84	6	505	27	20	10	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49552285--49552480	54	3.6	54	82	2	232	34	17	20	27	1.95
49552294--49552478	81	2.3	81	83	1	228	35	16	20	27	1.94
49552285--49552480	27	7.3	27	81	2	205	34	17	20	27	1.95
49552679--49552761	27	3.1	26	87	5	112	19	21	21	37	1.94
49552849--49552907	22	2.7	22	78	0	55	22	25	20	32	1.98
49553075--49553140	27	2.4	28	80	5	73	18	24	21	36	1.95
49553263--49553424	6	26.8	6	75	15	147	19	16	13	51	1.77
49553267--49553424	30	5.4	29	81	13	173	18	15	13	51	1.77
49553263--49553424	85	1.9	85	93	0	279	19	16	13	51	1.77
49553263--49553445	30	6.3	30	77	16	116	19	16	13	50	1.77
49554338--49554501	42	3.9	42	81	6	188	31	14	23	31	1.94
49555189--49555295	54	2.0	54	94	0	187	24	25	11	39	1.88
49559120--49559192	23	3.2	22	74	18	69	21	21	17	38	1.93
49559102--49559192	45	2.0	46	85	8	123	23	21	17	37	1.94
49559204--49559260	26	2.2	26	100	0	114	22	21	24	31	1.98
49559212--49559267	26	2.2	26	90	0	85	26	21	23	28	1.99
49561880--49562097	54	4.0	54	81	7	226	20	24	16	38	1.92
49561901--49562097	55	3.6	54	82	7	229	20	24	17	37	1.94
49562288--49562373	44	2.0	44	81	4	102	26	24	11	37	1.90
49568461--49568538	39	2.0	39	92	0	129	21	10	30	37	1.87
49570317--49570955	47	13.6	47	89	0	949	33	10	29	25	1.90
49576253--49576311	30	2.0	30	89	0	91	32	23	6	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49590054--49590093	20	2.0	20	90	0	62	32	2	30	35	1.71
49590662--49590789	63	2.0	63	95	0	229	17	15	28	38	1.91
49592726--49592820	27	3.5	27	72	5	84	34	23	8	33	1.85
49592812--49593027	27	8.0	27	87	1	299	35	19	21	24	1.96
49592812--49593027	81	2.7	80	92	1	333	35	19	21	24	1.96
49593541--49593603	22	2.9	22	83	9	83	20	23	20	34	1.96
49593690--49593768	27	3.0	26	87	5	104	17	24	20	37	1.93
49593888--49594012	6	20.3	6	72	16	96	19	19	13	48	1.81
49593891--49593955	25	2.6	25	90	0	94	20	21	13	44	1.86
49593888--49593991	31	3.4	31	74	15	115	19	21	13	46	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356