Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  129  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41144134--41144193
30
2.0
30
96
0
111
31
23
10
35
1.88
41185524--41185570
23
2.0
22
84
12
58
48
23
8
19
1.75
41188022--41188203
28
6.5
28
94
0
294
25
12
28
32
1.93
41194782--41194942
71
2.3
70
81
3
196
16
19
39
24
1.92
41198418--41198457
19
2.0
21
85
9
57
15
35
25
25
1.94
41205850--41205901
27
2.0
26
84
3
68
17
26
21
34
1.95
41209649--41209722
29
2.6
29
89
4
105
25
16
32
25
1.96
41210033--41210230
40
4.9
40
78
8
154
26
21
25
26
2.00
41210033--41210217
82
2.3
82
80
9
193
26
22
25
25
2.00
41213599--41214136
47
11.4
47
94
0
869
32
8
29
29
1.87
41214255--41214333
37
2.1
37
88
4
115
25
18
30
25
1.98
41218921--41218983
32
2.0
32
90
6
101
22
22
36
19
1.95
41222637--41222759
49
2.5
49
79
7
133
29
21
26
22
1.99
41232267--41232329
31
2.0
31
90
0
99
25
7
12
53
1.65
41232258--41232328
31
2.2
32
85
5
81
23
8
12
54
1.65
41234488--41234571
42
2.0
42
100
0
168
30
9
19
40
1.83
41238698--41238882
56
3.3
55
89
5
264
35
24
13
27
1.93
41250863--41250914
27
1.9
27
96
0
95
30
0
11
57
1.34
41254169--41254231
24
2.6
24
85
9
76
33
1
6
58
1.33
41266442--41266885
86
5.2
86
79
11
430
29
18
18
34
1.95
41266689--41266854
77
2.2
77
84
5
230
29
16
20
33
1.94
41266834--41266868
14
2.5
14
90
0
52
20
17
2
60
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41269264--41269435
93
1.8
93
89
0
272
27
30
21
20
1.98
41269257--41269438
46
3.9
46
76
9
181
28
30
20
20
1.98
41271596--41271628
12
2.8
12
86
4
50
0
18
3
78
0.87
41272370--41272418
22
2.2
22
82
7
55
36
4
2
57
1.30
41272381--41272447
24
2.6
26
79
11
75
34
1
4
59
1.26
41272407--41272484
40
2.0
41
82
10
99
35
1
6
56
1.33
41276740--41276796
28
2.0
28
100
0
114
24
17
21
36
1.94
41286067--41286147
40
2.0
40
97
0
153
39
4
12
43
1.64
41290926--41291244
47
6.7
47
73
15
252
26
18
30
24
1.98
41290926--41291244
94
3.4
94
80
10
282
26
18
30
24
1.98
41291067--41291244
96
1.8
98
84
8
247
25
17
31
25
1.97
41296520--41296586
28
2.4
28
89
0
98
17
41
20
19
1.90
41299131--41299505
48
7.9
48
83
4
456
33
27
18
20
1.96
41299145--41299498
188
1.9
188
87
2
523
33
26
19
20
1.96
41299966--41300038
29
2.5
28
78
10
76
30
21
0
47
1.51
41301869--41301921
23
2.3
23
87
6
72
30
15
0
54
1.41
41301887--41302018
5
24.2
5
71
18
77
24
14
1
59
1.43
41301887--41302018
16
8.1
15
71
18
77
24
14
1
59
1.43
41301887--41301964
28
2.8
28
92
0
120
24
16
0
58
1.38
41301881--41302018
11
12.0
11
71
17
86
23
14
1
60
1.43
41301913--41301994
21
3.8
21
80
3
83
20
14
1
63
1.37
41301911--41302012
32
3.2
31
79
9
89
21
13
1
62
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41302039--41302071
16
2.1
16
94
5
59
12
9
0
78
0.95
41302113--41302200
34
2.4
37
81
14
103
28
9
0
62
1.25
41302863--41302925
22
2.8
22
90
7
92
28
17
1
52
1.54
41302953--41303010
11
5.1
11
76
14
55
20
17
0
62
1.33
41302956--41303003
6
8.3
6
84
9
64
18
16
0
64
1.29
41302955--41303010
12
4.9
11
83
14
69
19
17
0
62
1.33
41303118--41303181
27
2.4
28
73
7
69
39
3
9
48
1.51
41306025--41306049
11
2.3
11
100
0
50
76
16
8
0
1.02
41311429--41311458
14
2.1
15
93
6
53
40
0
0
60
0.97
41313551--41313587
18
2.0
20
89
10
60
67
18
8
5
1.36
41315936--41316000
26
2.4
28
78
17
66
61
10
3
24
1.43
41315955--41316009
28
2.0
26
82
6
65
61
12
0
25
1.31
41316326--41316383
30
2.0
31
86
10
86
56
6
3
32
1.42
41316357--41316413
24
2.5
24
77
5
64
59
3
7
29
1.40
41318774--41319042
141
1.9
143
81
7
332
34
20
14
30
1.93
41318922--41319217
86
3.4
84
83
7
346
32
19
17
30
1.95
41318689--41319135
231
1.9
229
82
7
550
35
19
15
29
1.93
41319164--41319276
60
1.9
60
94
0
199
21
25
18
34
1.96
41320176--41320263
45
2.0
45
86
4
124
14
26
13
45
1.82
41331292--41331356
26
2.4
28
78
17
66
61
10
3
24
1.43
41331311--41331365
28
2.0
26
82
6
65
61
12
0
25
1.31
41331713--41331772
25
2.4
25
75
8
61
60
3
6
30
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41333482--41333653
46
3.7
46
75
9
170
20
19
29
30
1.97
41333474--41333646
93
1.9
93
88
2
267
21
20
29
28
1.98
41336807--41336971
80
2.1
79
86
5
226
26
20
27
26
1.99
41336753--41336938
40
4.7
40
87
5
234
24
21
27
26
1.99
41339827--41339906
15
5.4
15
77
7
83
10
18
13
57
1.64
41339818--41339905
30
3.0
30
80
11
92
10
18
15
55
1.68
41342288--41342466
46
3.9
46
76
7
191
21
21
28
29
1.98
41342285--41342459
93
1.9
93
90
0
278
21
21
28
28
1.99
41345478--41345613
41
3.4
41
83
5
147
31
20
19
28
1.97
41345498--41345610
41
2.9
41
88
5
153
33
17
18
30
1.94
41346514--41346610
6
15.3
6
73
15
63
1
19
6
73
1.11
41346514--41346610
31
3.1
31
75
14
90
1
19
6
73
1.11
41347939--41348069
4
32.2
4
78
7
122
68
1
5
24
1.19
41347939--41348062
53
2.3
53
82
14
157
67
1
5
25
1.21
41349729--41349847
45
2.7
44
78
2
130
29
21
13
36
1.91
41349729--41349862
44
3.0
44
79
2
151
29
19
16
34
1.94
41359013--41359171
42
3.8
41
79
5
174
30
25
15
28
1.96
41359013--41359171
85
1.9
84
82
3
203
30
25
15
28
1.96
41362958--41363022
28
2.3
28
92
5
105
33
29
7
29
1.85
41363128--41363190
28
2.2
29
88
2
92
20
23
23
31
1.98
41363138--41363201
28
2.2
28
86
2
83
23
26
18
31
1.98
41369461--41369694
49
4.7
49
82
3
288
29
25
17
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41369461--41369694
101
2.4
98
83
4
299
29
25
17
26
1.98
41374186--41374448
46
5.7
45
75
13
191
25
30
17
26
1.97
41374285--41374448
47
3.5
47
73
15
160
25
30
15
28
1.96
41382071--41382096
10
2.6
10
100
0
52
19
0
11
69
1.18
41384090--41384117
14
2.0
14
100
0
56
21
7
35
35
1.81
41384918--41384957
19
2.1
19
85
4
53
55
15
0
30
1.41
41386065--41386160
27
3.6
27
88
0
147
27
12
17
42
1.85
41387986--41388147
50
3.3
50
87
3
229
39
14
13
32
1.85
41387962--41388147
99
1.9
101
85
4
261
39
13
14
31
1.86
41387962--41388147
50
3.7
49
86
3
228
39
13
14
31
1.86
41389484--41389536
25
2.1
25
100
0
106
39
11
24
24
1.88
41392842--41392902
31
2.0
31
83
6
79
11
11
11
65
1.47
41392843--41392908
30
2.2
30
81
8
71
12
12
10
65
1.48
41409772--41409820
10
4.7
10
75
9
53
36
0
4
59
1.17
41409770--41409831
32
1.9
33
96
3
117
40
0
4
54
1.22
41412124--41412160
18
2.1
18
90
10
58
59
0
35
5
1.20
41426758--41426847
45
2.0
44
86
2
126
30
18
23
27
1.98
41430712--41430934
79
2.8
78
82
9
265
24
27
22
25
2.00
41430712--41430934
39
5.7
40
86
8
266
24
27
22
25
2.00
41433469--41433532
31
2.1
31
90
0
101
25
23
14
37
1.92
41433741--41433848
25
4.4
24
83
8
128
27
22
22
27
1.99
41433896--41433942
20
2.3
20
92
7
78
34
19
10
36
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41438151--41438273
45
2.7
45
82
3
140
31
17
22
27
1.97
41438151--41438236
22
3.9
22
86
6
120
26
18
25
29
1.98
41442888--41442924
17
2.2
17
90
0
56
24
18
29
27
1.98
41442873--41443013
51
2.8
51
73
8
126
27
19
26
26
1.99
41444259--41444340
40
2.0
40
86
4
112
35
15
25
23
1.94
41445483--41445624
60
2.4
60
77
7
137
28
19
19
33
1.95
41450172--41450260
28
3.1
28
85
7
126
28
12
29
30
1.93
41455144--41455178
14
2.4
15
90
4
54
28
14
0
57
1.38
41455468--41455513
24
1.9
24
86
8
67
36
10
2
50
1.50
41455848--41455932
41
2.1
41
95
0
152
24
23
24
27
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356