Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  270  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88600624--88600674
24
2.1
25
85
3
68
35
0
7
56
1.28
88600635--88600699
24
2.7
25
79
15
75
33
1
7
56
1.37
88607207--88607233
12
2.2
12
100
0
54
14
0
0
85
0.61
88610014--88610078
21
3.2
21
73
20
75
40
23
26
10
1.87
88609996--88610096
39
2.6
39
93
0
166
37
24
25
11
1.90
88612387--88612413
2
13.5
2
100
0
54
48
0
0
51
1.00
88615719--88615760
20
2.0
21
86
4
59
45
0
23
30
1.53
88619571--88619605
5
7.0
5
96
0
61
57
0
42
0
0.99
88620031--88620101
35
2.0
35
94
0
124
42
9
12
35
1.76
88621504--88621548
18
2.4
19
85
7
56
62
2
22
13
1.42
88621457--88621553
42
2.3
40
79
10
104
63
5
19
11
1.45
88622216--88622254
18
2.1
19
85
4
53
30
2
0
66
1.05
88628602--88628648
21
2.2
21
92
7
78
42
8
25
23
1.82
88629394--88629443
22
2.3
22
90
10
77
64
2
0
34
1.05
88629542--88629576
13
2.8
12
91
8
61
60
0
8
31
1.27
88630340--88630365
5
5.2
5
100
0
52
80
0
19
0
0.71
88636866--88636905
14
3.1
13
86
10
55
20
7
10
62
1.50
88638173--88638238
19
3.5
17
73
18
60
56
1
3
39
1.24
88638175--88638243
10
7.1
10
75
15
56
57
1
2
37
1.22
88639514--88639546
15
2.2
15
94
0
57
33
15
0
51
1.43
88641287--88641336
26
2.0
26
84
7
68
60
2
0
38
1.09
88646944--88646984
21
2.0
21
81
18
50
21
26
19
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88651303--88651382
35
2.3
36
72
14
85
22
18
16
42
1.89
88651500--88651578
40
2.0
40
94
0
140
24
16
3
55
1.57
88662324--88662363
19
2.2
19
86
4
55
70
5
2
22
1.19
88666842--88666884
14
3.1
14
93
0
77
39
0
37
23
1.55
88666913--88666952
19
2.1
19
90
9
64
30
12
32
25
1.92
88666969--88666998
14
2.1
14
93
0
51
13
3
40
43
1.60
88667026--88667061
13
2.6
14
86
8
56
27
0
38
33
1.57
88668010--88668059
21
2.3
23
89
6
77
38
38
4
20
1.71
88668052--88668170
7
16.7
7
70
10
62
47
26
2
24
1.65
88668319--88668591
41
6.7
41
84
4
291
20
21
22
35
1.96
88676641--88676695
29
2.0
27
89
7
83
34
0
0
65
0.93
88676767--88676815
20
2.4
21
82
3
64
34
2
0
63
1.06
88676771--88676849
29
2.5
30
78
21
83
31
1
0
67
0.99
88676807--88676865
26
2.3
26
82
5
66
28
1
1
67
1.10
88680024--88680122
17
6.4
17
71
21
51
59
0
5
35
1.19
88680041--88680113
11
6.4
11
71
13
58
60
0
4
35
1.16
88685125--88685162
20
1.9
20
88
0
58
21
26
28
23
1.99
88686458--88686562
42
2.7
38
75
11
106
48
8
12
30
1.71
88689721--88689762
22
1.9
22
90
9
68
21
2
0
76
0.90
88689991--88690100
23
4.8
23
70
14
68
30
2
3
63
1.25
88690034--88690067
16
2.1
16
94
0
59
23
0
8
67
1.18
88690075--88690205
46
2.7
49
72
13
119
33
3
0
62
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88690159--88690212
21
2.5
22
82
14
60
29
3
1
64
1.21
88690215--88690254
19
2.2
19
86
4
55
35
5
0
60
1.19
88690621--88690670
19
2.9
16
80
13
55
40
10
16
34
1.81
88690631--88690673
19
2.1
21
87
8
63
39
9
16
34
1.80
88691196--88691229
18
1.9
17
88
5
50
29
0
0
70
0.87
88700417--88700478
1
62.0
1
73
0
52
87
0
12
0
0.55
88700417--88700478
7
8.6
7
78
18
65
87
0
12
0
0.55
88700420--88700478
16
3.9
15
82
6
75
86
0
13
0
0.57
88700417--88700478
23
2.8
22
85
4
88
87
0
12
0
0.55
88700420--88700472
9
5.7
9
80
14
63
86
0
13
0
0.56
88701540--88701973
87
5.0
87
66
19
237
33
19
19
27
1.96
88701538--88702060
175
3.0
175
89
2
786
32
18
20
27
1.96
88702475--88702553
19
4.2
19
87
9
117
37
11
16
34
1.85
88703075--88703109
18
2.0
17
88
5
52
31
0
0
68
0.90
88704071--88704120
23
2.1
24
82
10
59
26
6
6
62
1.42
88715860--88715942
43
1.9
44
92
2
141
32
16
25
25
1.96
88716080--88716305
44
5.2
44
75
13
214
30
13
26
30
1.94
88716028--88716284
131
2.0
131
94
0
451
28
15
26
30
1.96
88717775--88717875
23
4.5
22
74
16
82
33
0
1
63
1.12
88717777--88717848
11
6.6
10
72
21
56
31
1
2
63
1.17
88717788--88717874
46
1.9
45
81
11
106
34
0
2
63
1.07
88717896--88717943
23
2.2
23
85
7
64
31
6
0
62
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88717908--88717953
16
2.8
17
83
6
58
32
4
0
63
1.14
88717897--88717960
21
3.1
19
79
16
65
29
6
1
62
1.29
88718496--88718545
23
2.1
24
82
10
59
26
6
6
62
1.42
88723688--88723755
21
3.2
21
79
4
84
42
7
23
26
1.80
88727188--88727260
5
14.2
5
71
21
53
36
1
0
61
1.05
88727187--88727227
12
3.5
11
84
12
55
34
0
0
65
0.93
88727808--88727871
25
2.6
25
78
14
71
25
1
3
70
1.11
88739279--88739880
44
14.0
44
77
13
358
29
15
26
28
1.96
88739393--88739615
41
5.3
41
70
19
183
30
18
25
25
1.98
88739359--88739659
84
3.6
84
88
2
408
29
17
26
26
1.97
88739432--88739626
40
4.7
41
69
20
120
31
17
26
24
1.97
88739281--88739866
132
4.5
132
73
13
457
29
15
26
28
1.96
88739602--88739881
44
6.4
44
89
2
366
30
13
28
27
1.95
88741448--88741502
28
2.0
27
82
7
65
36
1
0
61
1.06
88741568--88741640
5
14.2
5
71
21
53
36
1
0
61
1.05
88741567--88741607
12
3.5
11
84
12
55
34
0
0
65
0.93
88742230--88742264
17
2.1
16
89
5
52
14
2
0
82
0.77
88755275--88755390
59
2.0
59
91
0
187
22
17
12
48
1.80
88756088--88756845
88
8.6
88
79
13
500
27
16
25
30
1.97
88755991--88756937
221
4.3
221
89
4
1303
27
17
24
30
1.97
88756088--88757059
309
3.1
308
89
4
1385
27
16
25
30
1.97
88756838--88757135
88
3.5
88
87
4
373
28
16
25
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88756996--88757210
78
2.8
75
85
6
268
33
16
24
26
1.96
88763102--88763136
18
2.0
18
88
5
54
68
0
0
31
0.90
88763646--88763735
19
4.7
19
86
9
112
38
15
8
36
1.79
88763679--88763735
17
3.5
15
88
11
53
35
15
10
38
1.82
88764179--88764672
175
2.8
175
89
0
738
27
19
18
34
1.95
88764237--88764512
86
3.2
86
69
19
255
26
18
19
35
1.95
88765732--88765785
7
7.7
7
84
12
67
0
12
0
87
0.56
88765732--88765787
16
3.3
16
85
9
76
0
12
0
87
0.54
88765745--88765787
19
2.3
19
95
0
77
0
11
0
88
0.52
88765738--88765787
9
5.7
9
90
4
75
0
12
0
88
0.53
88771411--88771443
17
1.9
17
88
11
50
69
0
0
30
0.88
88771411--88771444
18
1.9
17
88
5
50
70
0
0
29
0.87
88771970--88772029
17
3.2
19
86
13
88
35
16
10
38
1.82
88774018--88774100
31
2.7
31
88
1
114
39
2
1
56
1.20
88776160--88776256
49
2.0
49
89
0
149
44
28
8
18
1.79
88783864--88783918
26
2.1
26
82
0
65
40
12
18
29
1.87
88785572--88785637
30
2.2
30
94
2
116
33
10
13
42
1.79
88787899--88788015
39
3.2
38
67
18
102
22
26
32
18
1.97
88787899--88788054
72
2.2
71
90
1
240
21
25
33
18
1.96
88789793--88789849
28
2.0
28
96
0
105
43
26
14
15
1.85
88792538--88792662
64
2.0
64
82
3
153
37
24
17
20
1.94
88793036--88793107
37
1.9
37
91
0
117
15
18
19
47
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88796709--88796835
56
2.3
56
84
2
157
28
12
29
29
1.93
88796737--88796835
28
3.6
28
94
1
164
29
11
29
30
1.91
88798825--88798922
28
3.5
28
75
8
108
16
20
34
28
1.94
88798823--88798952
57
2.2
57
91
2
206
17
17
36
28
1.93
88798853--88798952
29
3.4
29
72
5
94
17
17
37
29
1.92
88803878--88803948
28
2.6
27
90
2
106
29
11
28
30
1.91
88803895--88803955
28
2.2
28
87
0
95
36
9
24
29
1.88
88805221--88805252
8
4.0
8
95
0
55
12
0
15
71
1.14
88807573--88807604
16
1.9
17
93
6
57
53
0
0
46
1.00
88807548--88807728
54
3.1
54
71
19
148
43
1
3
51
1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356