genome.fa.s11.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  171  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55533804--55533870	26	2.6	26	86	6	100	38	22	7	31	1.82
55535151--55535365	101	2.1	100	86	0	295	24	26	32	16	1.96
55539113--55539232	56	2.1	56	98	0	231	45	9	23	22	1.81
55540420--55540624	40	5.2	40	94	1	333	24	20	27	27	1.99
55540360--55540624	80	3.3	80	87	4	358	25	21	26	26	1.99
55540360--55540657	119	2.5	118	81	6	316	26	21	26	26	2.00
55547081--55547200	56	2.1	56	98	0	231	45	9	23	22	1.81
55548327--55548551	40	5.7	40	85	5	287	24	21	27	26	1.99
55553921--55554183	40	6.6	39	86	4	287	25	27	21	25	1.99
55553921--55554183	120	2.2	119	82	4	316	25	27	21	25	1.99
55554115--55554192	40	1.9	41	82	10	97	26	28	20	24	1.99
55561891--55562153	40	6.6	39	86	4	287	25	27	21	25	1.99
55561891--55562153	120	2.2	119	82	4	316	25	27	21	25	1.99
55562085--55562162	40	1.9	41	82	10	97	26	28	20	24	1.99
55564945--55564985	18	2.2	19	91	4	66	39	9	9	41	1.71
55567741--55567928	105	1.8	105	88	5	283	30	25	15	27	1.96
55573198--55573299	50	2.0	50	96	0	186	37	11	11	39	1.79
55579316--55579365	20	2.6	19	78	15	57	44	2	22	32	1.64
55582131--55582163	11	2.9	12	86	13	52	33	0	0	66	0.92
55582285--55582345	30	2.0	30	90	6	97	55	9	4	29	1.53
55582384--55582447	33	1.9	33	81	12	78	62	4	14	18	1.48
55587204--55587240	18	2.1	18	94	0	65	32	24	29	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55588737--55588792	28	2.0	28	96	0	103	25	8	14	51	1.70
55590858--55590892	13	2.7	13	90	0	61	31	28	34	5	1.81
55590778--55590965	99	1.9	99	89	0	295	27	19	28	24	1.99
55613753--55613866	47	2.5	46	85	1	156	22	24	23	28	1.99
55613756--55613884	46	2.8	46	84	1	159	22	21	24	31	1.98
55630780--55630950	93	1.8	93	92	2	290	28	28	21	22	1.99
55630772--55630947	46	3.8	46	76	14	191	28	27	20	22	1.99
55631369--55631429	30	2.0	30	87	0	86	31	26	8	34	1.86
55643104--55643144	9	3.9	11	87	12	52	17	7	0	75	1.02
55643107--55643182	5	15.4	5	77	16	63	18	5	1	75	1.07
55643933--55643965	13	2.6	13	90	4	50	39	0	12	48	1.40
55645829--55646000	93	1.8	93	91	2	283	29	29	19	21	1.98
55645822--55645997	46	3.8	46	77	14	191	30	28	19	21	1.97
55645865--55646016	46	3.3	47	75	14	154	30	27	18	23	1.98
55650676--55650847	93	1.8	93	93	2	301	29	29	20	20	1.98
55650669--55650844	46	3.8	46	77	14	200	30	29	19	20	1.97
55657661--55657888	48	4.8	48	75	11	225	26	18	33	21	1.96
55657621--55657888	94	2.8	94	80	10	271	27	19	30	22	1.97
55663779--55663904	40	3.2	40	83	0	171	34	15	13	35	1.87
55676082--55676138	15	3.9	15	88	2	89	35	0	12	52	1.39
55676510--55676574	23	2.9	23	77	6	80	15	21	24	38	1.92
55678582--55678672	45	2.0	45	97	0	173	25	19	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55680423--55680594	46	3.7	46	78	11	181	21	19	29	29	1.97
55680416--55680587	93	1.8	93	88	2	265	22	20	29	28	1.98
55683538--55683575	15	2.5	15	87	8	51	15	21	10	52	1.72
55685974--55686149	46	3.8	45	78	11	187	21	21	27	28	1.99
55685971--55686142	93	1.8	93	91	2	283	22	22	27	27	1.99
55695952--55695987	8	4.6	8	96	3	65	91	8	0	0	0.41
55696709--55696750	22	2.0	22	85	4	59	54	11	2	30	1.49
55696776--55696818	10	4.3	10	78	0	50	65	13	0	20	1.27
55697522--55697607	10	8.3	10	76	21	79	27	0	4	67	1.10
55697522--55697615	9	10.3	9	70	20	54	27	0	5	67	1.12
55697525--55697571	23	2.0	24	87	4	69	36	0	2	61	1.08
55697522--55697606	31	2.7	30	83	8	98	28	0	4	67	1.11
55697574--55697627	18	2.9	18	81	10	56	25	0	7	66	1.17
55705702--55705925	40	5.7	40	82	7	217	25	20	27	26	1.99
55713644--55713867	40	5.7	40	81	8	226	25	21	27	25	1.99
55713697--55713866	79	2.2	78	82	5	216	25	21	27	25	2.00
55713723--55713900	79	2.2	80	82	3	200	25	21	28	24	1.99
55735008--55735232	40	5.7	40	83	7	235	25	20	27	26	1.99
55735088--55735265	79	2.2	80	81	3	200	25	21	28	25	1.99
55743008--55743179	79	2.2	79	81	3	202	25	21	27	25	1.99
55743008--55743177	40	4.3	39	85	5	189	25	21	27	25	1.99
55750192--55750429	49	4.8	49	76	8	230	30	24	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55750428--55750603	89	2.0	89	97	0	334	28	23	14	33	1.94
55755298--55755530	49	4.7	50	80	4	247	30	26	18	24	1.98
55755304--55755537	101	2.4	98	84	4	299	29	27	17	24	1.98
55780059--55780087	15	1.9	15	100	0	58	24	27	20	27	1.99
55790225--55790274	24	2.0	27	84	11	70	58	4	12	26	1.51
55790360--55790408	17	2.9	17	75	22	50	75	0	8	16	1.03
55791950--55792072	44	2.8	44	83	0	147	30	14	19	34	1.92
55792159--55792564	45	8.9	45	73	7	300	28	23	18	29	1.98
55792388--55792557	44	3.8	44	81	1	205	26	24	20	28	1.99
55792380--55792552	89	1.9	89	90	0	274	24	24	20	30	1.98
55792149--55792513	188	1.9	188	79	4	405	27	23	18	30	1.98
55798794--55798830	18	2.1	18	100	0	74	40	10	21	27	1.86
55812271--55812295	13	1.9	13	100	0	50	32	16	16	36	1.90
55813809--55814399	47	12.6	47	92	3	958	32	8	29	29	1.87
55817288--55817336	22	2.2	23	82	10	57	75	2	6	16	1.09
55817303--55817342	19	2.2	18	90	4	62	77	0	5	17	0.94
55817287--55817337	23	2.2	24	80	16	63	76	1	5	15	1.07
55818650--55818695	21	2.1	23	88	8	69	19	2	28	50	1.60
55835224--55835455	76	3.1	75	77	3	221	29	20	22	27	1.98
55835257--55835501	76	3.2	76	78	3	235	29	20	22	26	1.99
55838929--55839231	150	2.0	150	99	0	597	37	14	10	36	1.81
55846234--55846446	76	2.8	76	82	1	275	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55855825--55855863	20	1.9	21	85	15	55	56	12	2	28	1.50
55861551--55862169	47	13.1	47	93	1	995	32	9	29	28	1.88
55861551--55862169	143	4.4	141	93	1	1031	32	9	29	28	1.88
55861551--55862117	190	3.0	190	95	2	1021	32	8	28	29	1.87
55862288--55862366	37	2.1	37	86	4	106	26	18	31	22	1.97
55868663--55868693	7	4.4	7	100	0	62	25	12	0	61	1.32
55870048--55870090	22	2.0	22	81	9	52	30	0	4	65	1.13
55883954--55883999	24	2.0	24	91	4	76	36	0	2	60	1.09
55883954--55883999	23	2.0	23	86	4	65	36	0	2	60	1.09
55884032--55884099	26	2.5	26	78	17	68	33	5	4	55	1.44
55887502--55887534	11	3.1	11	91	4	50	63	0	0	36	0.95
55887874--55887921	20	2.4	20	82	6	62	56	0	2	41	1.11
55891665--55891702	20	1.9	20	89	10	60	13	10	7	68	1.39
55893306--55893374	31	2.2	31	92	0	111	13	23	40	23	1.89
55893831--55893864	13	2.5	14	85	9	52	17	17	17	47	1.84
55911934--55912162	95	2.4	97	90	3	365	24	28	19	27	1.98
55911930--55912162	48	4.9	48	80	4	265	24	28	19	27	1.99
55922518--55922868	48	7.3	48	80	2	382	25	27	18	28	1.98
55922518--55922868	96	3.6	96	91	1	524	25	27	18	28	1.98
55924746--55924867	22	5.3	22	62	21	61	25	29	11	33	1.91
55924718--55925018	47	6.3	47	89	5	401	27	29	9	32	1.89
55924724--55925042	98	3.3	98	84	8	429	28	29	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55960597--55960642	18	2.6	18	85	0	56	21	32	34	10	1.88
55963363--55963423	30	2.0	30	96	0	113	31	24	8	36	1.85
55968562--55968604	22	2.0	22	85	0	59	58	6	4	30	1.45
55968859--55968908	24	2.2	24	85	7	68	60	6	10	24	1.51
55970442--55970479	18	2.1	18	90	0	58	39	10	0	50	1.37
55977886--55977945	31	1.9	31	100	0	120	30	6	3	60	1.39
55978804--55978842	19	2.1	19	85	9	53	64	2	0	33	1.08
55982656--55982689	18	1.9	18	88	5	52	38	0	2	58	1.13
55986456--55986538	43	1.9	43	90	0	130	32	21	22	22	1.98
55986539--55986620	43	1.9	43	92	0	137	24	15	25	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356