Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  324  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104846388--104846492
3
35.0
3
70
24
71
32
0
0
65
1.05
104846375--104846444
10
6.9
10
72
27
51
32
2
0
64
1.08
104846355--104846487
48
2.6
52
82
14
147
31
3
0
64
1.14
104850259--104850323
27
2.4
27
75
12
71
41
0
0
58
0.98
104850270--104850312
15
2.9
15
80
16
54
37
0
0
62
0.95
104850271--104850319
13
3.5
13
77
22
55
34
0
0
65
0.93
104850373--104850415
21
2.0
22
81
4
52
41
2
4
51
1.35
104850411--104850444
18
1.9
17
93
0
50
61
5
0
32
1.20
104854830--104854883
27
2.0
27
96
0
99
37
9
7
46
1.64
104856944--104857023
39
2.1
39
97
0
151
30
21
15
33
1.94
104858109--104858165
28
2.1
27
87
9
80
57
3
0
38
1.16
104861506--104861553
16
3.1
15
90
6
69
64
2
2
31
1.16
104861502--104861557
24
2.3
24
81
6
69
66
1
1
30
1.12
104861502--104861553
8
6.5
8
82
8
61
65
1
1
30
1.14
104861670--104861726
19
2.8
20
73
7
62
56
5
7
31
1.49
104861705--104861769
25
2.8
24
83
6
80
52
6
7
33
1.55
104861790--104861921
23
5.5
24
67
21
73
57
3
4
34
1.34
104861789--104861921
25
5.5
24
68
15
71
57
3
4
34
1.34
104862411--104862585
30
5.8
30
91
0
287
22
3
48
25
1.66
104862411--104862585
60
2.9
60
96
0
323
22
3
48
25
1.66
104863297--104863548
77
3.3
77
89
2
366
34
22
18
24
1.96
104863631--104863673
14
2.9
16
76
16
56
67
6
11
13
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104863620--104863670
14
3.6
14
77
12
50
64
3
11
19
1.41
104863693--104863894
76
2.7
75
88
3
309
32
21
15
30
1.94
104863650--104863891
76
3.2
74
84
5
299
34
21
15
28
1.94
104863881--104863908
14
2.0
14
100
0
56
57
7
21
14
1.61
104863800--104863984
89
2.1
88
84
7
248
37
19
17
25
1.93
104863890--104864058
73
2.3
74
85
2
232
36
19
17
26
1.94
104864038--104864087
14
3.6
14
81
7
57
64
4
12
20
1.43
104864067--104864308
78
3.2
75
84
5
307
37
19
16
26
1.92
104863585--104864376
417
1.9
409
87
5
1173
36
19
16
27
1.93
104864067--104864472
71
5.3
71
74
17
302
36
17
16
29
1.92
104864189--104864541
155
2.2
155
83
9
441
34
18
16
31
1.93
104864407--104864573
88
1.9
87
81
7
203
41
16
13
28
1.86
104864565--104864883
77
4.3
74
83
7
351
33
20
16
30
1.94
104864607--104865023
77
5.4
76
77
12
431
33
21
15
29
1.94
104864874--104865015
72
2.0
73
90
1
223
38
23
15
22
1.92
104864607--104865029
160
2.7
157
82
8
483
34
21
15
29
1.94
104865169--104865522
72
4.7
73
85
6
374
34
19
14
31
1.92
104865169--104865508
74
4.5
74
87
5
416
32
20
15
32
1.93
104865169--104865526
146
2.4
148
81
7
422
34
19
14
31
1.92
104865526--104865701
71
2.5
70
85
3
212
34
22
14
28
1.94
104888278--104888398
62
2.0
62
96
3
228
54
19
6
19
1.65
104890811--104890841
12
2.6
12
94
0
53
6
29
41
22
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104894029--104894066
18
2.2
18
86
9
53
68
2
7
21
1.28
104895252--104895302
20
2.5
20
83
0
57
19
27
11
41
1.86
104895918--104895942
6
4.2
6
100
0
50
0
16
0
84
0.63
104899850--104899901
23
2.3
23
96
0
95
38
1
13
46
1.54
104900739--104900802
18
3.6
18
77
8
58
20
6
3
70
1.23
104905866--104905926
19
3.0
21
85
9
63
37
18
9
34
1.83
104905878--104905939
19
3.2
19
95
4
106
35
17
9
37
1.83
104906379--104906942
171
3.3
171
86
5
774
27
20
19
32
1.97
104906895--104907200
44
7.1
44
70
11
204
27
22
17
32
1.96
104906891--104907200
131
2.4
126
87
5
408
27
22
17
32
1.96
104908086--104908117
15
2.1
16
94
5
57
12
3
0
84
0.74
104919627--104919662
12
3.0
12
95
0
63
41
5
25
27
1.77
104921231--104921290
8
7.5
8
85
7
68
65
3
1
30
1.19
104921433--104921656
25
9.0
25
68
16
92
56
4
5
33
1.43
104921474--104921591
27
4.5
27
70
9
91
56
4
6
32
1.45
104921518--104921604
27
3.3
27
70
13
74
58
2
4
34
1.31
104922137--104922251
30
3.8
30
92
0
194
21
3
49
25
1.65
104929511--104929569
21
2.8
20
78
21
59
32
3
3
61
1.29
104941716--104942664
44
21.8
44
69
13
412
32
14
25
27
1.95
104941807--104941937
37
3.3
37
68
22
113
36
13
21
28
1.92
104941732--104941998
82
3.3
82
88
2
383
33
14
22
29
1.93
104941981--104942664
89
7.7
87
77
7
486
30
15
26
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104942272--104942596
134
2.4
134
91
3
512
29
15
28
26
1.96
104944215--104944273
21
2.8
20
78
21
59
32
3
3
61
1.29
104944630--104944668
4
10.2
4
83
10
55
20
0
2
76
0.90
104952837--104953072
118
2.0
118
89
0
364
24
17
29
28
1.97
104953193--104953240
1
48.0
1
78
0
51
89
0
10
0
0.48
104953194--104953240
10
4.7
10
89
10
78
89
0
10
0
0.49
104953193--104953240
21
2.3
21
92
7
80
89
0
10
0
0.48
104961838--104961878
21
2.0
21
90
0
64
24
9
29
36
1.87
104965994--104966037
20
2.0
23
87
12
67
59
11
4
25
1.51
104967533--104967578
24
1.9
24
90
0
74
67
2
2
28
1.14
104970114--104970148
17
2.1
17
94
0
61
74
5
2
17
1.14
104970735--104970799
15
4.4
15
67
18
55
13
4
10
70
1.30
104970732--104970820
44
2.0
45
93
2
153
14
5
10
69
1.34
104971415--104971500
44
1.9
45
81
6
104
29
3
3
63
1.27
104971533--104971649
33
3.7
30
77
19
105
29
3
5
62
1.33
104971548--104971665
32
3.7
32
79
14
109
27
4
4
64
1.31
104972872--104972914
16
2.7
15
86
10
59
2
30
0
67
1.03
104975495--104975595
43
2.3
43
86
3
132
28
13
22
34
1.93
104978753--104978895
72
2.0
72
94
0
250
26
16
31
25
1.96
104983265--104983304
15
2.5
15
88
8
53
2
30
0
67
1.04
104986619--104986651
17
1.9
17
93
0
57
33
0
9
57
1.30
104987988--104988023
17
2.1
17
94
0
63
36
19
8
36
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104990422--104990454
17
1.9
17
88
11
50
63
3
6
27
1.32
104990547--104990770
3
75.3
3
66
15
72
57
2
8
31
1.43
104990502--104990562
22
2.8
22
80
2
61
68
6
6
18
1.33
104990770--104990801
16
2.0
16
93
0
55
50
6
21
21
1.71
104990906--104990943
16
2.4
16
86
8
51
63
0
7
28
1.23
104991925--104991949
12
2.1
12
100
0
50
16
8
36
40
1.77
104993525--104993566
17
2.3
19
84
8
52
59
2
4
33
1.31
105017993--105018044
21
2.5
21
76
14
54
21
3
9
65
1.38
105020886--105021202
127
2.5
127
85
2
440
38
19
17
24
1.93
105023189--105023236
16
3.0
16
79
11
62
68
0
0
31
0.90
105023189--105023305
22
5.0
22
75
18
80
63
0
2
34
1.08
105023206--105023255
14
3.5
14
89
5
73
62
0
2
36
1.07
105023206--105023334
5
26.0
5
68
24
69
59
0
4
35
1.18
105023191--105023255
29
2.1
30
88
8
96
64
0
1
33
1.03
105023194--105023289
10
10.9
9
68
21
53
63
0
2
34
1.06
105023362--105023427
34
2.0
33
82
14
82
56
7
4
31
1.48
105023437--105023465
12
2.3
13
94
5
51
65
0
0
34
0.93
105028097--105028132
8
4.4
8
89
3
54
61
0
2
36
1.11
105028048--105028180
68
1.9
70
82
14
170
50
0
1
47
1.15
105032149--105032192
13
3.3
13
78
15
54
34
4
0
61
1.16
105032149--105032193
14
3.3
14
81
6
65
33
4
0
62
1.15
105032143--105032198
27
2.1
26
96
3
103
37
3
0
58
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105032732--105032769
19
2.0
19
94
0
67
13
21
18
47
1.82
105034019--105034048
16
1.9
16
93
6
53
60
3
10
26
1.45
105035671--105035859
96
2.0
96
88
2
283
41
9
30
18
1.82
105038580--105038613
17
2.0
17
94
0
59
44
50
0
5
1.26
105043219--105043252
17
2.0
17
94
0
59
44
50
0
5
1.26
105044509--105044671
86
1.9
86
100
0
326
28
5
17
49
1.69
105046128--105046435
157
2.0
157
96
0
562
47
4
3
44
1.40
105046295--105046329
18
2.0
17
88
5
52
45
0
0
54
0.99
105046565--105046616
16
3.2
16
97
0
95
38
34
0
26
1.57
105060066--105060185
61
2.0
61
98
1
233
54
19
6
20
1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356